num4normality 0.0.1-java
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- checksums.yaml +7 -0
- data/CHANGELOG.md +9 -0
- data/Gemfile +3 -0
- data/LICENSE +21 -0
- data/Rakefile +8 -0
- data/ext/num4normality/Normality.java +313 -0
- data/lib/commons-math3-3.6.1.jar +0 -0
- data/lib/jcommon-1.0.23.jar +0 -0
- data/lib/jfreechart-1.5.4.jar +0 -0
- data/lib/num4normality.rb +68 -0
- metadata +92 -0
checksums.yaml
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---
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SHA256:
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metadata.gz: 6be725c6a9b20d5c4ca46f2543c96e293be67c9bcf2638816cb29331eadb8180
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data.tar.gz: d18160bcab51e0760a2e4b533be709235f06d18b2150bb05cc4a9ef66a96179f
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SHA512:
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metadata.gz: 1e9c798eaa8043b712da5940f361c8adffa82f4436cccc34843286baad3109d481354fea2a8f6f914f4f8205f2ff0393c31f47cdde589cdb408506257ba06491
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data.tar.gz: 9f257c671f62f84c224a03641d802d7f275a6d042c80d336f4a666283def61b53a169527c6ec854676ff3344da8e60bcb2a0e6716b8afa8e31d700172d91fed2
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data/CHANGELOG.md
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data/Gemfile
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data/LICENSE
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MIT License
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Copyright (c) 2023 siranovel
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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data/Rakefile
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import org.jfree.chart.JFreeChart;
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import org.jfree.chart.StandardChartTheme;
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import org.jfree.chart.ChartFactory;
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import org.jfree.data.xy.XYSeriesCollection;
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import org.jfree.data.xy.XYSeries;
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import org.jfree.chart.plot.XYPlot;
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import org.jfree.chart.axis.NumberAxis;
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import org.jfree.chart.axis.ValueAxis;
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import org.jfree.chart.plot.PlotOrientation;
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import org.jfree.chart.axis.NumberTickUnit;
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import org.jfree.chart.labels.XYToolTipGenerator;
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import org.jfree.chart.labels.StandardXYToolTipGenerator;
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import org.jfree.chart.renderer.xy.XYItemRenderer;
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import org.jfree.chart.renderer.xy.XYLineAndShapeRenderer;
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import org.jfree.chart.plot.DatasetRenderingOrder;
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import org.jfree.chart.ChartUtils;
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import java.io.File;
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import java.io.IOException;
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import org.apache.commons.math3.stat.descriptive.DescriptiveStatistics;
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import org.apache.commons.math3.distribution.NormalDistribution;
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import java.util.Arrays;
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import java.text.DecimalFormat;
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public class Normality {
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public static void qqplot(String dname, double[] xi) {
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ChartPlot plot = new QQPlot();
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JFreeChart chart = plot.createChart(dname, xi);
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plot.writeJPEG("qqplot.jpeg", chart, 800, 500);
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}
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public static void kstest(String dname, double[] xi) {
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ChartPlot plot = new KSTest();
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JFreeChart chart = plot.createChart(dname, xi);
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plot.writeJPEG("kstest.jpeg", chart, 800, 500);
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}
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public static boolean skewnesstest(double[] xi) {
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DAgostinosTest daigo = new SkewnessTest();
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double b1 = daigo.calcTestStatistic(xi);
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return daigo.test(b1, 0.05);
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}
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public static boolean kurtosistest(double[] xi) {
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DAgostinosTest daigo = new KurtosisTest();
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double b2 = daigo.calcTestStatistic(xi);
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return daigo.test(b2, 0.05);
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}
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private interface ChartPlot {
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JFreeChart createChart(String dname, double[] xi);
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default void writeJPEG(String fname, JFreeChart chart, int width, int height) {
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File file = new File(fname);
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try {
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ChartUtils.saveChartAsJPEG(file, chart, width, height);
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} catch (IOException e) {
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e.printStackTrace();
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}
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}
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}
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private interface DAgostinosTest {
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double calcTestStatistic(double[] xi);
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boolean test(double statistic, double a);
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}
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// Q-Qplot
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private static class QQPlot implements ChartPlot {
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private DescriptiveStatistics stat = null;
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private double m = 0.0;
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private double sd = 0.0;
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public QQPlot() {
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stat = new DescriptiveStatistics();
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}
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public JFreeChart createChart(String dname, double[] xi) {
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Arrays.stream(xi).forEach(stat::addValue);
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m = stat.getMean(); // 平均
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sd = stat.getStandardDeviation();// 標準偏差
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XYPlot plot = createPlot(dname, xi);
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/*--- 横軸 ---*/
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NumberAxis domainAxis = new NumberAxis("標準正規分布");
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plot.setDomainAxis(domainAxis);
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domainAxis.setLowerMargin(0.03);
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domainAxis.setUpperMargin(0.03);
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domainAxis.setLowerBound(-4);
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domainAxis.setUpperBound(4);
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ChartFactory.setChartTheme(StandardChartTheme.createLegacyTheme());
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return new JFreeChart("正規性の検定", plot);
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}
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private XYPlot createPlot(String dname, double[] xi) {
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XYItemRenderer renderer0 = new XYLineAndShapeRenderer(false, true);
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XYItemRenderer renderer1 = new XYLineAndShapeRenderer(true, false);
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XYToolTipGenerator toolTipGenerator = new StandardXYToolTipGenerator();
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renderer0.setDefaultToolTipGenerator(toolTipGenerator);
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renderer0.setURLGenerator(null);
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renderer1.setDefaultToolTipGenerator(toolTipGenerator);
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renderer1.setURLGenerator(null);
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XYPlot plot = new XYPlot();
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plot.setOrientation(PlotOrientation.VERTICAL);
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plot.mapDatasetToRangeAxis(0,0);
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plot.mapDatasetToRangeAxis(1,0);
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plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
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/*--- 縦軸 ---*/
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NumberAxis valueAxis0 = new NumberAxis("観測値");
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plot.setRangeAxis(valueAxis0);
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plot.setRenderer(0, renderer0);
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plot.setDataset(0, createDataset0(dname, xi));
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plot.setRenderer(1, renderer1);
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plot.setDataset(1, createDataset1());
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return plot;
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}
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private XYSeriesCollection createDataset0(String dname, double[] xi) {
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double den = sd / Math.sqrt(xi.length);
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XYSeries series = new XYSeries(dname);
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for (int i = 0; i < xi.length; i++) {
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double x = (xi[i] - m) / den;
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series.add(x, xi[i]);
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}
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XYSeriesCollection data = new XYSeriesCollection();
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data.addSeries(series);
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return data;
|
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}
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private XYSeriesCollection createDataset1() {
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XYSeries series = new XYSeries("累積");
|
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NormalDistribution ndist = new NormalDistribution(0, 1);
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|
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for (double p = 0.001; p < 1.0; p += 0.01) {
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double x = ndist.inverseCumulativeProbability(p);
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series.add(x, x * sd + m);
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}
|
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|
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XYSeriesCollection data = new XYSeriesCollection();
|
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data.addSeries(series);
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return data;
|
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}
|
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}
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// コルモゴルフ・スミルノフ検定
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private static class KSTest implements ChartPlot {
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private NormalDistribution ndist = null;
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public KSTest() {
|
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ndist = new NormalDistribution(0, 1);
|
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}
|
159
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public JFreeChart createChart(String dname, double[] xi) {
|
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NumberAxis domainAxis = new NumberAxis("標準正規分布");
|
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XYPlot plot = createPlot(dname, xi);
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|
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/*--- 横軸 ---*/
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plot.setDomainAxis(domainAxis);
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domainAxis.setLowerMargin(0.03);
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domainAxis.setUpperMargin(0.03);
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domainAxis.setLowerBound(-4);
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domainAxis.setUpperBound(4);
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|
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ChartFactory.setChartTheme(StandardChartTheme.createLegacyTheme());
|
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return new JFreeChart("コルモゴルフ・スミルノフ検定", plot);
|
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}
|
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private XYPlot createPlot(String dname, double[] xi) {
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XYItemRenderer renderer0 = new XYLineAndShapeRenderer(false, true);
|
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XYItemRenderer renderer1 = new XYLineAndShapeRenderer(true, false);
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XYToolTipGenerator toolTipGenerator = new StandardXYToolTipGenerator();
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renderer0.setDefaultToolTipGenerator(toolTipGenerator);
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renderer0.setURLGenerator(null);
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renderer1.setDefaultToolTipGenerator(toolTipGenerator);
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renderer1.setURLGenerator(null);
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|
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XYPlot plot = new XYPlot();
|
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plot.setOrientation(PlotOrientation.VERTICAL);
|
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plot.mapDatasetToRangeAxis(0,0);
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plot.mapDatasetToRangeAxis(1,0);
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plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD);
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|
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/*--- 縦軸 ---*/
|
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NumberAxis valueAxis0 = new NumberAxis("確率");
|
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plot.setRangeAxis(valueAxis0);
|
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valueAxis0.setLowerBound(0);
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valueAxis0.setUpperBound(1);
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valueAxis0.setTickUnit(new NumberTickUnit(0.1));
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valueAxis0.setNumberFormatOverride(new DecimalFormat("0.0#"));
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plot.setRenderer(0, renderer0);
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plot.setDataset(0, createDataset0(dname, xi));
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plot.setRenderer(1, renderer1);
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plot.setDataset(1, createDataset1());
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return plot;
|
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}
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private XYSeriesCollection createDataset0(String dname, double[] xi) {
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Arrays.sort(xi);
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DescriptiveStatistics stat = new DescriptiveStatistics();
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Arrays.stream(xi).forEach(stat::addValue);
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double m = stat.getMean(); // 平均
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double sd = stat.getStandardDeviation();// 標準偏差
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double den = sd / Math.sqrt(xi.length);
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double sum = stat.getSum();
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double p = 0.0;
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XYSeries series = new XYSeries(dname);
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for (int n = 0; n < xi.length; n++) {
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double x = (xi[n] - m) / den;
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p += xi[n] / sum;
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series.add(x, p);
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}
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XYSeriesCollection data = new XYSeriesCollection();
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data.addSeries(series);
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return data;
|
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}
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private XYSeriesCollection createDataset1() {
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XYSeries series = new XYSeries("累積");
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for (double x = -4; x < 4; x += 0.01) {
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double y = ndist.cumulativeProbability(x);
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series.add(x, y);
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}
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XYSeriesCollection data = new XYSeriesCollection();
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data.addSeries(series);
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return data;
|
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}
|
240
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}
|
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// タコスディーノ検定(歪度)
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private static class SkewnessTest implements DAgostinosTest {
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private long n = 0;
|
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private NormalDistribution ndist = null;
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public SkewnessTest() {
|
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ndist = new NormalDistribution(0, 1);
|
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}
|
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public double calcTestStatistic(double[] xi) {
|
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DescriptiveStatistics stat = new DescriptiveStatistics();
|
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|
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Arrays.stream(xi).forEach(stat::addValue);
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n = stat.getN();
|
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return Math.sqrt(stat.getSkewness());
|
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}
|
255
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|
256
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public boolean test(double statistic, double a) {
|
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double ua_2 = ndist.inverseCumulativeProbability(1.0 - a);
|
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|
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return (Math.abs(statistic) > cnvb2tob2p(ua_2))
|
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? true : false;
|
261
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}
|
262
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private double cnvb2tob2p(double ua_2) {
|
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double el = (n + 1.0) * (n + 1.0) * (n + 3.0) * (n + 5.0); // 分子
|
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double den = 24 * n * (n - 2.0) * (n - 3.0); // 分母
|
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double b2p = Math.sqrt(el / den) *
|
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(long)(ua_2 + 3.0 / (2.0 * n) * (ua_2 * ua_2 * ua_2 - 3 * ua_2));
|
267
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+
|
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return b2p;
|
269
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+
}
|
270
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+
}
|
271
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// タコスディーノ検定(尖度)
|
272
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private static class KurtosisTest implements DAgostinosTest {
|
273
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private long n = 0;
|
274
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private NormalDistribution ndist = null;
|
275
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public KurtosisTest() {
|
276
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ndist = new NormalDistribution(0, 1);
|
277
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+
}
|
278
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public double calcTestStatistic(double[] xi) {
|
279
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+
DescriptiveStatistics stat = new DescriptiveStatistics();
|
280
|
+
|
281
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Arrays.stream(xi).forEach(stat::addValue);
|
282
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n = stat.getN();
|
283
|
+
|
284
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return stat.getKurtosis();
|
285
|
+
}
|
286
|
+
public boolean test(double statistic, double a) {
|
287
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+
boolean ret = false;
|
288
|
+
double ua_2 = ndist.inverseCumulativeProbability(1.0 - a);
|
289
|
+
double b2p = cnvb2tob2p(statistic);
|
290
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+
|
291
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double r_val = ua_2 + Math.sqrt(6.0 / n) * (ua_2 * ua_2 - 1.0);
|
292
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double l_val = -1.0 * ua_2 + Math.sqrt(6.0 / n) * (ua_2 * ua_2 - 1.0);
|
293
|
+
|
294
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+
if (b2p > r_val) {
|
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+
ret = true;
|
296
|
+
}
|
297
|
+
if (b2p < l_val) {
|
298
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+
ret = true;
|
299
|
+
}
|
300
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+
return ret;
|
301
|
+
}
|
302
|
+
private double cnvb2tob2p(double b2) {
|
303
|
+
double el = (n + 1.0) * (n + 1.0) * (n + 3.0) * (n + 5.0); // 分子
|
304
|
+
double den = 24 * n * (n - 2.0) * (n - 3.0); // 分母
|
305
|
+
|
306
|
+
double b2p = Math.sqrt(el / den) *
|
307
|
+
(long)(b2 - 3 * (n - 1.0) / (n + 3.0));
|
308
|
+
|
309
|
+
return b2p;
|
310
|
+
}
|
311
|
+
}
|
312
|
+
}
|
313
|
+
|
Binary file
|
Binary file
|
Binary file
|
@@ -0,0 +1,68 @@
|
|
1
|
+
require 'java'
|
2
|
+
require 'num4normality.jar'
|
3
|
+
require 'jfreechart-1.5.4.jar'
|
4
|
+
require 'commons-math3-3.6.1.jar'
|
5
|
+
|
6
|
+
java_import 'Normality'
|
7
|
+
|
8
|
+
# 正規性の検定
|
9
|
+
# (Apache commoms math3使用)
|
10
|
+
module Num4NormalityLib
|
11
|
+
class << self
|
12
|
+
# Q-Qプロット
|
13
|
+
#
|
14
|
+
# @overload qqplot(dname, xi)
|
15
|
+
# @param [String] dname データ名
|
16
|
+
# @param [Array] xi データ(double[])
|
17
|
+
# @return [void] qqplot.jpegファイルを出力
|
18
|
+
# @example
|
19
|
+
# xi = [320, 240, 402, 325, 440, 286, 362, 281, 560, 212, 198, 209]
|
20
|
+
# Num4NormalityLib.qqplot("LDH", xi)
|
21
|
+
# => qqplot.jpeg
|
22
|
+
# @note
|
23
|
+
# グラフは、jfreechartを使用
|
24
|
+
def qqplot(dname, xi)
|
25
|
+
Normality.qqplot(dname, xi.to_java(Java::double))
|
26
|
+
end
|
27
|
+
# コルモゴルフ・スミルノフ検定
|
28
|
+
#
|
29
|
+
# @overload kstest(dname, xi)
|
30
|
+
# @param [String] dname データ名
|
31
|
+
# @param [Array] xi データ(double[])
|
32
|
+
# @return [void] kstest.jpegファイルを出力
|
33
|
+
# @example
|
34
|
+
# xi = [320, 240, 402, 325, 440, 286, 362, 281, 560, 212, 198, 209]
|
35
|
+
# Num4NormalityLib.kstest("LDH", xi)
|
36
|
+
# => kstest.jpeg
|
37
|
+
# @note
|
38
|
+
# グラフは、jfreechartを使用
|
39
|
+
def kstest(dname, xi)
|
40
|
+
Normality.kstest(dname, xi.to_java(Java::double))
|
41
|
+
end
|
42
|
+
# タコスディーノ検定(歪度)
|
43
|
+
#
|
44
|
+
# @overload skewnesstest(xi)
|
45
|
+
# @param [Array] xi データ(double[])
|
46
|
+
# @return [boolean] 検定結果(true:棄却域内 false:棄却域外)
|
47
|
+
# @example
|
48
|
+
# xi = [320, 240, 402, 325, 440, 286, 362, 281, 560, 212, 198, 209]
|
49
|
+
# Num4NormalityLib.skewnesstest(xi)
|
50
|
+
# => false
|
51
|
+
def skewnesstest(xi)
|
52
|
+
Normality.skewnesstest(xi.to_java(Java::double))
|
53
|
+
end
|
54
|
+
# タコスディーノ検定(尖度)
|
55
|
+
#
|
56
|
+
# @overload kurtosistest(xi)
|
57
|
+
# @param [Array] xi データ(double[])
|
58
|
+
# @return [boolean] 検定結果(true:棄却域内 false:棄却域外)
|
59
|
+
# @example
|
60
|
+
# xi = [320, 240, 402, 325, 440, 286, 362, 281, 560, 212, 198, 209]
|
61
|
+
# Num4NormalityLib.kurtosistest(xi)
|
62
|
+
# => false
|
63
|
+
def kurtosistest(xi)
|
64
|
+
Normality.kurtosistest(xi.to_java(Java::double))
|
65
|
+
end
|
66
|
+
end
|
67
|
+
end
|
68
|
+
|
metadata
ADDED
@@ -0,0 +1,92 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: num4normality
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.0.1
|
5
|
+
platform: java
|
6
|
+
authors:
|
7
|
+
- siranovel
|
8
|
+
autorequire:
|
9
|
+
bindir: bin
|
10
|
+
cert_chain: []
|
11
|
+
date: 2023-12-05 00:00:00.000000000 Z
|
12
|
+
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: rake
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - "~>"
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: '12.3'
|
20
|
+
- - ">="
|
21
|
+
- !ruby/object:Gem::Version
|
22
|
+
version: 12.3.3
|
23
|
+
type: :development
|
24
|
+
prerelease: false
|
25
|
+
version_requirements: !ruby/object:Gem::Requirement
|
26
|
+
requirements:
|
27
|
+
- - "~>"
|
28
|
+
- !ruby/object:Gem::Version
|
29
|
+
version: '12.3'
|
30
|
+
- - ">="
|
31
|
+
- !ruby/object:Gem::Version
|
32
|
+
version: 12.3.3
|
33
|
+
- !ruby/object:Gem::Dependency
|
34
|
+
name: rake-compiler
|
35
|
+
requirement: !ruby/object:Gem::Requirement
|
36
|
+
requirements:
|
37
|
+
- - "~>"
|
38
|
+
- !ruby/object:Gem::Version
|
39
|
+
version: '1.2'
|
40
|
+
- - ">="
|
41
|
+
- !ruby/object:Gem::Version
|
42
|
+
version: 1.2.5
|
43
|
+
type: :development
|
44
|
+
prerelease: false
|
45
|
+
version_requirements: !ruby/object:Gem::Requirement
|
46
|
+
requirements:
|
47
|
+
- - "~>"
|
48
|
+
- !ruby/object:Gem::Version
|
49
|
+
version: '1.2'
|
50
|
+
- - ">="
|
51
|
+
- !ruby/object:Gem::Version
|
52
|
+
version: 1.2.5
|
53
|
+
description: numerical solution for test of normality.
|
54
|
+
email: siranovel@gmail.com
|
55
|
+
executables: []
|
56
|
+
extensions:
|
57
|
+
- Rakefile
|
58
|
+
extra_rdoc_files: []
|
59
|
+
files:
|
60
|
+
- CHANGELOG.md
|
61
|
+
- Gemfile
|
62
|
+
- LICENSE
|
63
|
+
- Rakefile
|
64
|
+
- ext/num4normality/Normality.java
|
65
|
+
- lib/commons-math3-3.6.1.jar
|
66
|
+
- lib/jcommon-1.0.23.jar
|
67
|
+
- lib/jfreechart-1.5.4.jar
|
68
|
+
- lib/num4normality.rb
|
69
|
+
homepage: http://github.com/siranovel/num4normality
|
70
|
+
licenses:
|
71
|
+
- MIT
|
72
|
+
metadata: {}
|
73
|
+
post_install_message:
|
74
|
+
rdoc_options: []
|
75
|
+
require_paths:
|
76
|
+
- lib
|
77
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
78
|
+
requirements:
|
79
|
+
- - ">="
|
80
|
+
- !ruby/object:Gem::Version
|
81
|
+
version: '0'
|
82
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
83
|
+
requirements:
|
84
|
+
- - ">="
|
85
|
+
- !ruby/object:Gem::Version
|
86
|
+
version: '0'
|
87
|
+
requirements: []
|
88
|
+
rubygems_version: 3.3.7
|
89
|
+
signing_key:
|
90
|
+
specification_version: 4
|
91
|
+
summary: num for normality
|
92
|
+
test_files: []
|