nugen_barcode_splitter 0.0.14 → 0.0.15

data/bin/nugen_barcode_splitter

@@ -154,7 +154,7 @@ Dir.glob(options[:project_dir]+"/*").each do |p|
     merger = Merger.new(fwd,rev,outdir,number,barcodes)
     stats = merger.merge()
     stats_file = File.open("#{outdir}/nugen_demultiplexing.log", 'a')
-    stats_file.puts(stats)
+    stats_file.write(stats)
     stats_file.close()
   end
 

data/lib/nugen_barcode_splitter/merger.rb

@@ -50,7 +50,6 @@ class Merger
 
   def merge()
     statistics = Array.new(@sample_ids.length()+2,0)
-
     fwd_file = Zlib::GzipReader.open(@fwd)
     rev_file = Zlib::GzipReader.open(@rev)
     fwd_splitted_files = []
@@ -59,6 +58,7 @@ class Merger
     rev_out_files = []
     fwd_out_unmatched = File.open(@outdir+"/R1_#{@number}.unmatched.updated.fq",'w')
     rev_out_unmatched = File.open(@outdir+"/R2_#{@number}.unmatched.updated.fq",'w')
+
     @sample_ids.each_with_index do |sample_id, i|
       fwd_splitted_files[i] = File.open(@outdir+"/R1_#{@number}.#{sample_id}.fq")
       rev_splitted_files[i] = File.open(@outdir+"/R2_#{@number}.#{sample_id}.fq")

data/lib/nugen_barcode_splitter/statistics.rb

@@ -42,9 +42,10 @@ class Statistics
     @barcodes.each_with_index do |code, i|
       str += "#{code}:\t#{@num_reads[i]} \n"
     end
-    percent = (100 / @total.to_f) * @num_unmatched.to_f
-    percent = (percent.to_f * 100).round / 100.to_f
-    str += "Unmatched:\t#{@num_unmatched}\t(#{percent.to_f}%)\n"
+    #percent = (100 / @total.to_f) * @num_unmatched.to_f
+    #percent = (percent.to_f * 100).round / 100.to_f
+    str += "Unmatched:\t#{@num_unmatched}\n"
     str += "Total:\t#{@total}"
+    str.to_s
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: nugen_barcode_splitter
 version: !ruby/object:Gem::Version
-  version: 0.0.14
+  version: 0.0.15
   prerelease: 
 platform: ruby
 authors: