nugen_barcode_splitter 0.0.13 → 0.0.14
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data/bin/nugen_barcode_splitter
CHANGED
@@ -5,7 +5,7 @@ require "nugen_barcode_splitter"
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5
5
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require "fileutils"
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6
6
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7
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usage =<<EOF
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8
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-
V E R S I O N - 0 . 0 .
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8
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+
V E R S I O N - 0 . 0 . 14 - BETA
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9
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#{$0} [options] -p project_dir -o out_dir -c sample_sheet_nugen
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_____________________________________________________________________________
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11
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@@ -114,7 +114,6 @@ sample_sheet.create_barcode_txt("#{options[:out_dir]}/barcode")
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multx_opts = "#{options[:keep_barcode]} #{options[:eol_only]} #{options[:bol_only]} #{options[:mismatches]}"
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nugen_temp = NugenTemplate.new(options[:fastq_multx],multx_opts)
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117
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-
statistics = Statistics.new()
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118
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Dir.glob(options[:project_dir]+"/*").each do |p|
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next unless File.directory? p
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@@ -13,7 +13,7 @@ class NugenTemplate
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#{fastq_multx} #{options} <%= @barcodes %> \\
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14
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<(gunzip -c <%= @read %>) \\
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15
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-o <%= @lane_dir %>/<%= @direction %>.%.fq \\
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16
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-
>> <%= @lane_dir %>/
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+
>> <%= @lane_dir %>/nugen_demultiplexing_fastq_multx.log
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EOF
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end
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