nudge 0.0.1

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Files changed (584) hide show
  1. data/.gitignore +5 -0
  2. data/LICENSE.txt +21 -0
  3. data/Rakefile +23 -0
  4. data/VERSION +1 -0
  5. data/_spikes/couch_document_spike.rb +24 -0
  6. data/_spikes/nested_parsing/nested.rb +0 -0
  7. data/_spikes/nested_parsing/nested.treetop +6 -0
  8. data/_spikes/nudgeview/init.rb +19 -0
  9. data/_spikes/nudgeview/public/javascripts/app.js +12 -0
  10. data/_spikes/nudgeview/public/javascripts/jquery.js +4376 -0
  11. data/_spikes/nudgeview/public/javascripts/jquery.svg.js +1325 -0
  12. data/_spikes/nudgeview/views/index.erb +18 -0
  13. data/_spikes/nudgeview/views/index.haml +8 -0
  14. data/_spikes/simplestWeb/simplest.rb +44 -0
  15. data/_spikes/simplestWeb/views/main.erb +19 -0
  16. data/_spikes/sketches/nudgecode_spike.rb +146 -0
  17. data/_spikes/sketches/searchDSL_spike.rb +25 -0
  18. data/_spikes/sketches/search_operator_sketch_spike.txt +287 -0
  19. data/_spikes/sketches/searchspace_spike.rb +96 -0
  20. data/_spikes/symbolic_regression/activate.rb +35 -0
  21. data/_spikes/symbolic_regression/config/environment.rb +340 -0
  22. data/_spikes/symbolic_regression/config/environments/deployment.rb +0 -0
  23. data/_spikes/symbolic_regression/config/environments/development.rb +0 -0
  24. data/_spikes/symbolic_regression/experiment/objectives/programLength.rb +2 -0
  25. data/_spikes/symbolic_regression/experiment/objectives/summedSquaredError.rb +2 -0
  26. data/_spikes/symbolic_regression/lib/tasks/run.rake +0 -0
  27. data/doc/classes/BlockNode.html +146 -0
  28. data/doc/classes/BlockNode.src/M000246.html +18 -0
  29. data/doc/classes/BoolAndInstruction.html +218 -0
  30. data/doc/classes/BoolAndInstruction.src/M000003.html +15 -0
  31. data/doc/classes/BoolAndInstruction.src/M000004.html +16 -0
  32. data/doc/classes/BoolAndInstruction.src/M000005.html +15 -0
  33. data/doc/classes/BoolAndInstruction.src/M000006.html +15 -0
  34. data/doc/classes/BoolEqualQInstruction.html +218 -0
  35. data/doc/classes/BoolEqualQInstruction.src/M000015.html +15 -0
  36. data/doc/classes/BoolEqualQInstruction.src/M000016.html +16 -0
  37. data/doc/classes/BoolEqualQInstruction.src/M000017.html +15 -0
  38. data/doc/classes/BoolEqualQInstruction.src/M000018.html +15 -0
  39. data/doc/classes/BoolFromFloatInstruction.html +218 -0
  40. data/doc/classes/BoolFromFloatInstruction.src/M000071.html +15 -0
  41. data/doc/classes/BoolFromFloatInstruction.src/M000072.html +15 -0
  42. data/doc/classes/BoolFromFloatInstruction.src/M000073.html +15 -0
  43. data/doc/classes/BoolFromFloatInstruction.src/M000074.html +15 -0
  44. data/doc/classes/BoolFromIntInstruction.html +218 -0
  45. data/doc/classes/BoolFromIntInstruction.src/M000067.html +15 -0
  46. data/doc/classes/BoolFromIntInstruction.src/M000068.html +15 -0
  47. data/doc/classes/BoolFromIntInstruction.src/M000069.html +15 -0
  48. data/doc/classes/BoolFromIntInstruction.src/M000070.html +15 -0
  49. data/doc/classes/BoolNotInstruction.html +218 -0
  50. data/doc/classes/BoolNotInstruction.src/M000019.html +15 -0
  51. data/doc/classes/BoolNotInstruction.src/M000020.html +15 -0
  52. data/doc/classes/BoolNotInstruction.src/M000021.html +15 -0
  53. data/doc/classes/BoolNotInstruction.src/M000022.html +15 -0
  54. data/doc/classes/BoolOrInstruction.html +218 -0
  55. data/doc/classes/BoolOrInstruction.src/M000007.html +15 -0
  56. data/doc/classes/BoolOrInstruction.src/M000008.html +16 -0
  57. data/doc/classes/BoolOrInstruction.src/M000009.html +15 -0
  58. data/doc/classes/BoolOrInstruction.src/M000010.html +15 -0
  59. data/doc/classes/BoolRandomInstruction.html +218 -0
  60. data/doc/classes/BoolRandomInstruction.src/M000187.html +15 -0
  61. data/doc/classes/BoolRandomInstruction.src/M000188.html +14 -0
  62. data/doc/classes/BoolRandomInstruction.src/M000189.html +15 -0
  63. data/doc/classes/BoolRandomInstruction.src/M000190.html +15 -0
  64. data/doc/classes/BoolType.html +196 -0
  65. data/doc/classes/BoolType.src/M000240.html +16 -0
  66. data/doc/classes/BoolType.src/M000241.html +15 -0
  67. data/doc/classes/BoolType.src/M000242.html +15 -0
  68. data/doc/classes/BoolXorInstruction.html +218 -0
  69. data/doc/classes/BoolXorInstruction.src/M000011.html +15 -0
  70. data/doc/classes/BoolXorInstruction.src/M000012.html +16 -0
  71. data/doc/classes/BoolXorInstruction.src/M000013.html +15 -0
  72. data/doc/classes/BoolXorInstruction.src/M000014.html +15 -0
  73. data/doc/classes/ChannelNode.html +161 -0
  74. data/doc/classes/ChannelNode.src/M000249.html +15 -0
  75. data/doc/classes/ChannelNode.src/M000250.html +16 -0
  76. data/doc/classes/CodeType.html +269 -0
  77. data/doc/classes/CodeType.src/M000219.html +38 -0
  78. data/doc/classes/CodeType.src/M000220.html +16 -0
  79. data/doc/classes/CodeType.src/M000221.html +16 -0
  80. data/doc/classes/CodeType.src/M000222.html +16 -0
  81. data/doc/classes/CodeType.src/M000223.html +24 -0
  82. data/doc/classes/CodeType.src/M000224.html +42 -0
  83. data/doc/classes/ERCNode.html +183 -0
  84. data/doc/classes/ERCNode.src/M000254.html +15 -0
  85. data/doc/classes/ERCNode.src/M000255.html +16 -0
  86. data/doc/classes/ERCNode.src/M000256.html +16 -0
  87. data/doc/classes/ExecPopInstruction.html +218 -0
  88. data/doc/classes/ExecPopInstruction.src/M000075.html +15 -0
  89. data/doc/classes/ExecPopInstruction.src/M000076.html +14 -0
  90. data/doc/classes/ExecPopInstruction.src/M000077.html +15 -0
  91. data/doc/classes/ExecPopInstruction.src/M000078.html +14 -0
  92. data/doc/classes/FloatAbsInstruction.html +218 -0
  93. data/doc/classes/FloatAbsInstruction.src/M000107.html +15 -0
  94. data/doc/classes/FloatAbsInstruction.src/M000108.html +15 -0
  95. data/doc/classes/FloatAbsInstruction.src/M000109.html +15 -0
  96. data/doc/classes/FloatAbsInstruction.src/M000110.html +15 -0
  97. data/doc/classes/FloatAddInstruction.html +218 -0
  98. data/doc/classes/FloatAddInstruction.src/M000079.html +15 -0
  99. data/doc/classes/FloatAddInstruction.src/M000080.html +16 -0
  100. data/doc/classes/FloatAddInstruction.src/M000081.html +15 -0
  101. data/doc/classes/FloatAddInstruction.src/M000082.html +15 -0
  102. data/doc/classes/FloatCosineInstruction.html +218 -0
  103. data/doc/classes/FloatCosineInstruction.src/M000123.html +15 -0
  104. data/doc/classes/FloatCosineInstruction.src/M000124.html +15 -0
  105. data/doc/classes/FloatCosineInstruction.src/M000125.html +15 -0
  106. data/doc/classes/FloatCosineInstruction.src/M000126.html +15 -0
  107. data/doc/classes/FloatDivideInstruction.html +218 -0
  108. data/doc/classes/FloatDivideInstruction.src/M000091.html +15 -0
  109. data/doc/classes/FloatDivideInstruction.src/M000092.html +16 -0
  110. data/doc/classes/FloatDivideInstruction.src/M000093.html +20 -0
  111. data/doc/classes/FloatDivideInstruction.src/M000094.html +15 -0
  112. data/doc/classes/FloatFromBoolInstruction.html +218 -0
  113. data/doc/classes/FloatFromBoolInstruction.src/M000055.html +15 -0
  114. data/doc/classes/FloatFromBoolInstruction.src/M000056.html +15 -0
  115. data/doc/classes/FloatFromBoolInstruction.src/M000057.html +15 -0
  116. data/doc/classes/FloatFromBoolInstruction.src/M000058.html +15 -0
  117. data/doc/classes/FloatFromIntInstruction.html +218 -0
  118. data/doc/classes/FloatFromIntInstruction.src/M000063.html +15 -0
  119. data/doc/classes/FloatFromIntInstruction.src/M000064.html +15 -0
  120. data/doc/classes/FloatFromIntInstruction.src/M000065.html +15 -0
  121. data/doc/classes/FloatFromIntInstruction.src/M000066.html +15 -0
  122. data/doc/classes/FloatGreaterThanQInstruction.html +218 -0
  123. data/doc/classes/FloatGreaterThanQInstruction.src/M000035.html +15 -0
  124. data/doc/classes/FloatGreaterThanQInstruction.src/M000036.html +16 -0
  125. data/doc/classes/FloatGreaterThanQInstruction.src/M000037.html +15 -0
  126. data/doc/classes/FloatGreaterThanQInstruction.src/M000038.html +15 -0
  127. data/doc/classes/FloatIfInstruction.html +218 -0
  128. data/doc/classes/FloatIfInstruction.src/M000047.html +16 -0
  129. data/doc/classes/FloatIfInstruction.src/M000048.html +15 -0
  130. data/doc/classes/FloatIfInstruction.src/M000049.html +14 -0
  131. data/doc/classes/FloatIfInstruction.src/M000050.html +17 -0
  132. data/doc/classes/FloatLessThanQInstruction.html +218 -0
  133. data/doc/classes/FloatLessThanQInstruction.src/M000039.html +15 -0
  134. data/doc/classes/FloatLessThanQInstruction.src/M000040.html +16 -0
  135. data/doc/classes/FloatLessThanQInstruction.src/M000041.html +15 -0
  136. data/doc/classes/FloatLessThanQInstruction.src/M000042.html +15 -0
  137. data/doc/classes/FloatMaxInstruction.html +218 -0
  138. data/doc/classes/FloatMaxInstruction.src/M000095.html +15 -0
  139. data/doc/classes/FloatMaxInstruction.src/M000096.html +16 -0
  140. data/doc/classes/FloatMaxInstruction.src/M000097.html +15 -0
  141. data/doc/classes/FloatMaxInstruction.src/M000098.html +15 -0
  142. data/doc/classes/FloatMinInstruction.html +218 -0
  143. data/doc/classes/FloatMinInstruction.src/M000099.html +15 -0
  144. data/doc/classes/FloatMinInstruction.src/M000100.html +16 -0
  145. data/doc/classes/FloatMinInstruction.src/M000101.html +15 -0
  146. data/doc/classes/FloatMinInstruction.src/M000102.html +15 -0
  147. data/doc/classes/FloatMultiplyInstruction.html +218 -0
  148. data/doc/classes/FloatMultiplyInstruction.src/M000083.html +15 -0
  149. data/doc/classes/FloatMultiplyInstruction.src/M000084.html +16 -0
  150. data/doc/classes/FloatMultiplyInstruction.src/M000085.html +15 -0
  151. data/doc/classes/FloatMultiplyInstruction.src/M000086.html +15 -0
  152. data/doc/classes/FloatNegativeInstruction.html +218 -0
  153. data/doc/classes/FloatNegativeInstruction.src/M000103.html +15 -0
  154. data/doc/classes/FloatNegativeInstruction.src/M000104.html +15 -0
  155. data/doc/classes/FloatNegativeInstruction.src/M000105.html +15 -0
  156. data/doc/classes/FloatNegativeInstruction.src/M000106.html +15 -0
  157. data/doc/classes/FloatPowerInstruction.html +218 -0
  158. data/doc/classes/FloatPowerInstruction.src/M000111.html +15 -0
  159. data/doc/classes/FloatPowerInstruction.src/M000112.html +16 -0
  160. data/doc/classes/FloatPowerInstruction.src/M000113.html +20 -0
  161. data/doc/classes/FloatPowerInstruction.src/M000114.html +15 -0
  162. data/doc/classes/FloatRandomInstruction.html +218 -0
  163. data/doc/classes/FloatRandomInstruction.src/M000191.html +15 -0
  164. data/doc/classes/FloatRandomInstruction.src/M000192.html +14 -0
  165. data/doc/classes/FloatRandomInstruction.src/M000193.html +15 -0
  166. data/doc/classes/FloatRandomInstruction.src/M000194.html +15 -0
  167. data/doc/classes/FloatSineInstruction.html +218 -0
  168. data/doc/classes/FloatSineInstruction.src/M000119.html +15 -0
  169. data/doc/classes/FloatSineInstruction.src/M000120.html +15 -0
  170. data/doc/classes/FloatSineInstruction.src/M000121.html +15 -0
  171. data/doc/classes/FloatSineInstruction.src/M000122.html +15 -0
  172. data/doc/classes/FloatSqrtInstruction.html +218 -0
  173. data/doc/classes/FloatSqrtInstruction.src/M000115.html +15 -0
  174. data/doc/classes/FloatSqrtInstruction.src/M000116.html +15 -0
  175. data/doc/classes/FloatSqrtInstruction.src/M000117.html +19 -0
  176. data/doc/classes/FloatSqrtInstruction.src/M000118.html +15 -0
  177. data/doc/classes/FloatSubtractInstruction.html +218 -0
  178. data/doc/classes/FloatSubtractInstruction.src/M000087.html +15 -0
  179. data/doc/classes/FloatSubtractInstruction.src/M000088.html +16 -0
  180. data/doc/classes/FloatSubtractInstruction.src/M000089.html +15 -0
  181. data/doc/classes/FloatSubtractInstruction.src/M000090.html +15 -0
  182. data/doc/classes/FloatTangentInstruction.html +218 -0
  183. data/doc/classes/FloatTangentInstruction.src/M000127.html +15 -0
  184. data/doc/classes/FloatTangentInstruction.src/M000128.html +15 -0
  185. data/doc/classes/FloatTangentInstruction.src/M000129.html +15 -0
  186. data/doc/classes/FloatTangentInstruction.src/M000130.html +15 -0
  187. data/doc/classes/FloatType.html +196 -0
  188. data/doc/classes/FloatType.src/M000243.html +19 -0
  189. data/doc/classes/FloatType.src/M000244.html +15 -0
  190. data/doc/classes/FloatType.src/M000245.html +15 -0
  191. data/doc/classes/Helpers.html +161 -0
  192. data/doc/classes/Helpers.src/M000343.html +21 -0
  193. data/doc/classes/Helpers.src/M000344.html +24 -0
  194. data/doc/classes/Instruction/InstructionMethodError.html +110 -0
  195. data/doc/classes/Instruction/NaNResultError.html +110 -0
  196. data/doc/classes/Instruction/NotEnoughStackItems.html +110 -0
  197. data/doc/classes/Instruction.html +500 -0
  198. data/doc/classes/Instruction.src/M000131.html +17 -0
  199. data/doc/classes/Instruction.src/M000132.html +15 -0
  200. data/doc/classes/Instruction.src/M000133.html +15 -0
  201. data/doc/classes/Instruction.src/M000134.html +15 -0
  202. data/doc/classes/Instruction.src/M000135.html +15 -0
  203. data/doc/classes/Instruction.src/M000136.html +15 -0
  204. data/doc/classes/Instruction.src/M000137.html +15 -0
  205. data/doc/classes/Instruction.src/M000138.html +15 -0
  206. data/doc/classes/Instruction.src/M000139.html +22 -0
  207. data/doc/classes/Instruction.src/M000140.html +15 -0
  208. data/doc/classes/Instruction.src/M000141.html +25 -0
  209. data/doc/classes/Instruction.src/M000142.html +15 -0
  210. data/doc/classes/Instruction.src/M000143.html +15 -0
  211. data/doc/classes/Instruction.src/M000144.html +15 -0
  212. data/doc/classes/Instruction.src/M000145.html +15 -0
  213. data/doc/classes/Instruction.src/M000146.html +15 -0
  214. data/doc/classes/InstructionNode.html +161 -0
  215. data/doc/classes/InstructionNode.src/M000247.html +15 -0
  216. data/doc/classes/InstructionNode.src/M000248.html +16 -0
  217. data/doc/classes/IntAbsInstruction.html +218 -0
  218. data/doc/classes/IntAbsInstruction.src/M000175.html +15 -0
  219. data/doc/classes/IntAbsInstruction.src/M000176.html +15 -0
  220. data/doc/classes/IntAbsInstruction.src/M000177.html +15 -0
  221. data/doc/classes/IntAbsInstruction.src/M000178.html +15 -0
  222. data/doc/classes/IntAddInstruction.html +218 -0
  223. data/doc/classes/IntAddInstruction.src/M000147.html +15 -0
  224. data/doc/classes/IntAddInstruction.src/M000148.html +16 -0
  225. data/doc/classes/IntAddInstruction.src/M000149.html +15 -0
  226. data/doc/classes/IntAddInstruction.src/M000150.html +15 -0
  227. data/doc/classes/IntDepthInstruction.html +218 -0
  228. data/doc/classes/IntDepthInstruction.src/M000211.html +15 -0
  229. data/doc/classes/IntDepthInstruction.src/M000212.html +14 -0
  230. data/doc/classes/IntDepthInstruction.src/M000213.html +15 -0
  231. data/doc/classes/IntDepthInstruction.src/M000214.html +15 -0
  232. data/doc/classes/IntDivideInstruction.html +218 -0
  233. data/doc/classes/IntDivideInstruction.src/M000155.html +15 -0
  234. data/doc/classes/IntDivideInstruction.src/M000156.html +16 -0
  235. data/doc/classes/IntDivideInstruction.src/M000157.html +20 -0
  236. data/doc/classes/IntDivideInstruction.src/M000158.html +15 -0
  237. data/doc/classes/IntDuplicateInstruction.html +218 -0
  238. data/doc/classes/IntDuplicateInstruction.src/M000203.html +15 -0
  239. data/doc/classes/IntDuplicateInstruction.src/M000204.html +15 -0
  240. data/doc/classes/IntDuplicateInstruction.src/M000205.html +15 -0
  241. data/doc/classes/IntDuplicateInstruction.src/M000206.html +15 -0
  242. data/doc/classes/IntEqualQInstruction.html +218 -0
  243. data/doc/classes/IntEqualQInstruction.src/M000023.html +15 -0
  244. data/doc/classes/IntEqualQInstruction.src/M000024.html +16 -0
  245. data/doc/classes/IntEqualQInstruction.src/M000025.html +15 -0
  246. data/doc/classes/IntEqualQInstruction.src/M000026.html +15 -0
  247. data/doc/classes/IntFlushInstruction.html +218 -0
  248. data/doc/classes/IntFlushInstruction.src/M000215.html +15 -0
  249. data/doc/classes/IntFlushInstruction.src/M000216.html +14 -0
  250. data/doc/classes/IntFlushInstruction.src/M000217.html +14 -0
  251. data/doc/classes/IntFlushInstruction.src/M000218.html +15 -0
  252. data/doc/classes/IntFromBoolInstruction.html +218 -0
  253. data/doc/classes/IntFromBoolInstruction.src/M000051.html +15 -0
  254. data/doc/classes/IntFromBoolInstruction.src/M000052.html +15 -0
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  257. data/doc/classes/IntFromFloatInstruction.html +218 -0
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  262. data/doc/classes/IntGreaterThanQInstruction.html +218 -0
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  292. data/doc/classes/IntMultiplyInstruction.html +218 -0
  293. data/doc/classes/IntMultiplyInstruction.src/M000151.html +15 -0
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  296. data/doc/classes/IntMultiplyInstruction.src/M000154.html +15 -0
  297. data/doc/classes/IntNegativeInstruction.html +218 -0
  298. data/doc/classes/IntNegativeInstruction.src/M000179.html +15 -0
  299. data/doc/classes/IntNegativeInstruction.src/M000180.html +15 -0
  300. data/doc/classes/IntNegativeInstruction.src/M000181.html +15 -0
  301. data/doc/classes/IntNegativeInstruction.src/M000182.html +15 -0
  302. data/doc/classes/IntPopInstruction.html +218 -0
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  306. data/doc/classes/IntPopInstruction.src/M000198.html +14 -0
  307. data/doc/classes/IntRandomInstruction.html +218 -0
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  311. data/doc/classes/IntRandomInstruction.src/M000186.html +15 -0
  312. data/doc/classes/IntRotateInstruction.html +218 -0
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  544. data/spec/instructions/instruction_class_spec.rb +9 -0
  545. data/spec/instructions/int_calculations_spec.rb +125 -0
  546. data/spec/instructions/int_stack_spec.rb +398 -0
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  564. data/spec/search/helpers_spec.rb +59 -0
  565. data/spec/search/individual_spec.rb +356 -0
  566. data/spec/search/operators/any_one_sampler_spec.rb +40 -0
  567. data/spec/search/operators/dominated_quantile_spec.rb +111 -0
  568. data/spec/search/operators/duplicate_genomes_spec.rb +35 -0
  569. data/spec/search/operators/evaluators/program_point_evaluator_spec.rb +43 -0
  570. data/spec/search/operators/evaluators/test_case_evaluator_spec.rb +133 -0
  571. data/spec/search/operators/infrastructure_spec.rb +47 -0
  572. data/spec/search/operators/most_dominated_subset_spec.rb +47 -0
  573. data/spec/search/operators/nondominated_subset_spec.rb +97 -0
  574. data/spec/search/operators/pointCrossover_spec.rb +55 -0
  575. data/spec/search/operators/pointDeletion_spec.rb +57 -0
  576. data/spec/search/operators/pointMutation_spec.rb +71 -0
  577. data/spec/search/operators/random_guess_spec.rb +51 -0
  578. data/spec/search/operators/resample_and_clone_spec.rb +50 -0
  579. data/spec/search/operators/resample_values_spec.rb +126 -0
  580. data/spec/search/operators/sizePreservingMutation_spec.rb +2 -0
  581. data/spec/search/operators/uniformBackboneCrossover_spec.rb +63 -0
  582. data/spec/search/stations/station_spec.rb +496 -0
  583. data/spec/spec_helper.rb +11 -0
  584. metadata +738 -0
@@ -0,0 +1,67 @@
1
+ require File.dirname(__FILE__) + '/../spec_helper'
2
+ include Nudge
3
+
4
+ describe "Couch Writing" do
5
+ before(:each) do
6
+ Station.cleanup
7
+ time_now = Time.now
8
+ Time.stub!(:now).and_return(time_now)
9
+ time_now.stub!(:to_i).and_return(999999)
10
+
11
+ @dude = Individual.new("block {}")
12
+ @homeBase = Station.new("away")
13
+ @dude.scores = {"happiness" => 54}
14
+ @homeBase.add_individual(@dude)
15
+
16
+ @theActualDB = CouchRest.database!(@homeBase.database)
17
+ end
18
+
19
+ after(:each) do
20
+ @theActualDB.delete!
21
+ end
22
+
23
+
24
+ it "should write its data to the database for its Station" do
25
+ @dude.write
26
+ @dude.id.should_not == nil
27
+ end
28
+
29
+ it "should write the genome" do
30
+ @dude.write
31
+ id = @dude.id
32
+ foundThing = @theActualDB.get(id)
33
+ foundThing["genome"].should == @dude.genome
34
+ end
35
+
36
+ it "should write the scores hash" do
37
+ @dude.write
38
+ id = @dude.id
39
+ foundThing = @theActualDB.get(id)
40
+ foundThing["scores"].should == @dude.scores
41
+ end
42
+
43
+ it "should write the birthmoment of the individual" do
44
+ @dude.write
45
+ id = @dude.id
46
+ foundThing = @theActualDB.get(id)
47
+ foundThing["creation_time"].should == 999999
48
+ end
49
+ end
50
+
51
+ describe "Individual#find in Couch" do
52
+ before(:each) do
53
+ @couch_url = "http://localhost:5984/slash"
54
+ @theActualDB = CouchRest.database!(@couch_url)
55
+ @theData = {"genome"=>"do int_add", "scores"=> {"happiness"=>99}, "creation_time"=> 10000}
56
+ theResult = @theActualDB.save_doc(@theData)
57
+ @oldID = theResult["id"]
58
+ end
59
+
60
+ it "should return an Individual from a couch_url with a given ID" do
61
+ dude = Individual.get(@couch_url,@oldID)
62
+ dude.id.should == @oldID
63
+ dude.genome.should == @theData["genome"]
64
+ dude.scores.should == @theData["scores"]
65
+ dude.timestamp.should == @theData["creation_time"]
66
+ end
67
+ end
@@ -0,0 +1,92 @@
1
+ require File.join(File.dirname(__FILE__), "/../spec_helper")
2
+ include Nudge
3
+
4
+
5
+ describe "Channel Point" do
6
+ it "should be a kind of program point" do
7
+ myC = ChannelPoint.new("x")
8
+ myC.should be_a_kind_of(ProgramPoint)
9
+ end
10
+
11
+ it "should have a name parameter with no default" do
12
+ myC = ChannelPoint.new("x")
13
+ myC.should be_a_kind_of(ChannelPoint)
14
+ myC.name.should == "x"
15
+ lambda {ChannelPoint.new()}.should raise_error(ArgumentError)
16
+ end
17
+
18
+ describe "#go" do
19
+ before(:each) do
20
+ @ii = Interpreter.new()
21
+ @ii.reset("block{\nref x\nref y\nref z}")
22
+ @ii.bind_variable("x", LiteralPoint.new("float", 1.1))
23
+ @ii.bind_name("y", LiteralPoint.new("int", 99999))
24
+ #reference "z" is unbound
25
+ end
26
+
27
+ it "should pop the exec stack when the program_point ChannelPoint is interpreted" do
28
+ @ii.stacks[:exec].depth.should == 1
29
+ @ii.step
30
+ @ii.stacks[:exec].depth.should == 3
31
+ @ii.step
32
+ @ii.stacks[:exec].depth.should == 3
33
+ @ii.stacks[:exec].peek.value.should == 1.1
34
+ 2.times {@ii.step}
35
+ @ii.stacks[:exec].depth.should == 2
36
+ @ii.stacks[:exec].peek.value.should == 99999
37
+ end
38
+
39
+ it "should push the ChannelPoint object onto the :name stack if it's not bound" do
40
+ 6.times {@ii.step}
41
+ @ii.stacks[:name].depth.should == 1
42
+ @ii.stacks[:name].peek.name.should == "z"
43
+ end
44
+
45
+ it "should push the value onto the right stack" do
46
+ 3.times {@ii.step}
47
+ @ii.stacks[:float].peek.value.should == 1.1
48
+ 2.times {@ii.step}
49
+ @ii.stacks[:int].peek.value.should == 99999
50
+ @ii.step
51
+ @ii.stacks[:name].peek.name.should == "z"
52
+ end
53
+ end
54
+
55
+ describe "#tidy" do
56
+ it "should return 'ref x' when the name is 'x'" do
57
+ myC = ChannelPoint.new("x")
58
+ myC.tidy.should == "ref x"
59
+ end
60
+ end
61
+
62
+ describe "randomize" do
63
+ it "should set the ChannelPoint's name to a randomly selected channel or name key" do
64
+ context = Interpreter.new
65
+ context.reset_variables
66
+ context.reset_names
67
+ myC = ChannelPoint.new("a")
68
+ context.bind_name("y",LiteralPoint.new("bool", false))
69
+ myC.randomize(context)
70
+ myC.name.should == "y"
71
+ context.reset_names
72
+ context.bind_variable("z",LiteralPoint.new("bool", false))
73
+ myC.randomize(context)
74
+ myC.name.should == "z"
75
+ end
76
+ end
77
+
78
+ describe "#any" do
79
+ it "should be a class method that returns a completely random instance of a ChannelPoint" do
80
+ context = Interpreter.new
81
+ context.reset_variables
82
+ context.reset_names
83
+ context.bind_name("y",LiteralPoint.new("bool", false))
84
+ rC = ChannelPoint.any(context)
85
+ rC.name.should == "y"
86
+ context.reset_names
87
+ context.bind_variable("d",LiteralPoint.new("bool", false))
88
+ rC = ChannelPoint.any(context)
89
+ rC.name.should == "d"
90
+ end
91
+ end
92
+ end
@@ -0,0 +1,135 @@
1
+ # coding: utf-8
2
+ require File.join(File.dirname(__FILE__), "/../spec_helper")
3
+ include Nudge
4
+
5
+ describe "codeblock objects" do
6
+ describe "should only accept #new from a NudgeLanguageParser"
7
+
8
+ it "should be a kind of program point" do
9
+ myB = CodeBlock.new()
10
+ myB.should be_a_kind_of(ProgramPoint)
11
+ end
12
+
13
+ it "should take a listing as a param, default to 'block {}'" do
14
+ sCode = CodeBlock.new()
15
+ sCode.listing.should == "block {}"
16
+ tCode = CodeBlock.new("block {\n literal int, 3}")
17
+ tCode.listing.should == "block {\n literal int, 3}"
18
+ end
19
+
20
+ it "should expose its #contents" do
21
+ parser = NudgeLanguageParser.new()
22
+ cbs = ["block {\n literal int(3)}",
23
+ "block { do int_add \ndo int_subtract\n do int_divide}",
24
+ "block { block{}}", "block{ block{ do int_add block{ block{} block{}}} }"]
25
+
26
+ cbs.each do |myCode|
27
+ handMade = CodeBlock.new(myCode)
28
+ generated = parser.parse(myCode).to_points
29
+ handMade.contents.length.should == generated.contents.length
30
+ handMade.contents[0].tidy.should == generated.contents[0].tidy
31
+ handMade.listing.should == generated.listing
32
+ end
33
+ end
34
+
35
+
36
+ it "should return an indented nested text version for #tidy" do
37
+ parser = NudgeLanguageParser.new()
38
+ myB = parser.parse("block {}").to_points
39
+ myB.tidy.should == "block {}"
40
+
41
+ myB = parser.parse("block {\n\n}").to_points
42
+ myB.tidy.should == "block {}"
43
+
44
+ myB = parser.parse("block {\nblock{}\n}").to_points
45
+ myB.tidy.should == "block {\n block {}}"
46
+
47
+ myB = parser.parse("block {\nblock{\nblock{}}\n}").to_points
48
+ myB.tidy.should == "block {\n block {\n block {}}}"
49
+
50
+ myB = parser.parse("block {\nblock{}\nblock{}}").to_points
51
+ myB.tidy.should == "block {\n block {}\n block {}}"
52
+
53
+ myB = parser.parse("block {\ndo x\ndo y}").to_points
54
+ myB.tidy.should == "block {\n do x\n do y}"
55
+ end
56
+
57
+ it "--no really, even for VERY complicated trees" do
58
+ parser = NudgeLanguageParser.new()
59
+ myComplicated = fixture(:untidy1)
60
+ myExpected = fixture(:untidy1fixed)
61
+ myB = parser.parse(myComplicated).to_points
62
+ myB.tidy.should == myExpected.chomp
63
+
64
+ myDeep = "block {"* 88 + "}"*88
65
+ myB = parser.parse(myDeep).to_points
66
+ myB.tidy.split(/\n/).length.should == 88
67
+ end
68
+ end
69
+
70
+ describe "#go" do
71
+ describe "should split at the root #contents level and push IN REVERSE ORDER back onto :exec" do
72
+ before(:each) do
73
+ @ii = Interpreter.new()
74
+ @ii.clear_stacks
75
+ end
76
+
77
+ it " : if it is an empty Codeblock" do
78
+ @ii.reset("block {}")
79
+ @ii.step
80
+ @ii.stacks[:exec].depth.should == 0
81
+ end
82
+
83
+ it " : if it is a long, flat Codeblock" do
84
+ @ii.reset("block {\nliteral int(1)\nliteral int(2)\nliteral int(3)\nliteral int(4)}")
85
+ @ii.stacks[:exec].depth.should == 1
86
+ @ii.step
87
+ @ii.stacks[:exec].depth.should == 4
88
+ @ii.stacks[:exec].pop.value.should == 1
89
+ @ii.stacks[:exec].pop.value.should == 2
90
+ @ii.stacks[:exec].pop.value.should == 3
91
+ @ii.stacks[:exec].pop.value.should == 4
92
+ @ii.stacks[:exec].pop.should == nil
93
+ end
94
+
95
+ it " : if it is a deeply nested Codeblock" do
96
+ @ii.reset("block {\nblock {\n block {\nliteral int (1)}\nliteral bool (false)}}")
97
+ @ii.stacks[:exec].depth.should == 1
98
+ @ii.step
99
+ @ii.stacks[:exec].depth.should == 1
100
+ @ii.step
101
+ @ii.stacks[:exec].depth.should == 2
102
+ @ii.step
103
+ @ii.stacks[:exec].depth.should == 2
104
+ item = @ii.stacks[:exec].pop
105
+ item.should be_a_kind_of(LiteralPoint)
106
+ item.value.should == 1
107
+ item = @ii.stacks[:exec].pop
108
+ item.should be_a_kind_of(LiteralPoint)
109
+ item.value.should == false
110
+ end
111
+ end
112
+ end
113
+
114
+
115
+ describe "codeblock methods" do
116
+ describe "#points" do
117
+ it "should return the number of lines in the block" do
118
+ myP = CodeBlock.new("block {}")
119
+ myP.points.should == 1
120
+
121
+ myP = CodeBlock.new("block { block { block {}}}")
122
+ myP.points.should == 3
123
+
124
+ myP = CodeBlock.new("block { block {} block {}}")
125
+ myP.points.should == 3
126
+
127
+ myP = CodeBlock.new("block { do int_add}")
128
+ myP.points.should == 2
129
+
130
+ myP = CodeBlock.new("block { do int_add ref x1\nref x2}")
131
+ myP.points.should == 4
132
+
133
+ end
134
+ end
135
+ end
@@ -0,0 +1,257 @@
1
+ require File.join(File.dirname(__FILE__), "/../spec_helper")
2
+ include Nudge
3
+
4
+ describe "Code Type" do
5
+ it "should be a Singleton" do
6
+ CodeType.instance.should be_a_kind_of(Singleton)
7
+ end
8
+
9
+
10
+ it "should return the result of self.randomize when it receives an #any_value call" do
11
+ CodeType.should_receive(:random_value).and_return("hi there!")
12
+ CodeType.any_value(Interpreter.new).should == "hi there!"
13
+ end
14
+
15
+
16
+
17
+ describe "#random_skeleton" do
18
+ it "should accept params for points and branchiness" do
19
+ lambda{CodeType.random_skeleton(3,1)}.should_not raise_error
20
+ end
21
+
22
+ it "should return a string filled with asterisks and 'block{}'" do
23
+ CodeType.random_skeleton(3,0).should == "block {**}"
24
+ CodeType.random_skeleton(3,1).should == "block {**}"
25
+ CodeType.random_skeleton(1,1).should == "block {}"
26
+ CodeType.random_skeleton(2,2).should == "block { block {}}"
27
+ CodeType.random_skeleton(20,3).count("}").should == 3
28
+ end
29
+
30
+ it "should limit range-check the blocks parameter" do
31
+ CodeType.random_skeleton(1,40).should == "block {}"
32
+ CodeType.random_skeleton(4,20).count("}").should == 4
33
+ CodeType.random_skeleton(4,-20).count("}").should == 1
34
+ CodeType.random_skeleton(1,-20).should == "*"
35
+ end
36
+ end
37
+
38
+
39
+
40
+ describe "any_type" do
41
+ before(:each) do
42
+ @context = Interpreter.new
43
+ end
44
+
45
+ it "should return a single sample from the #types method of the context passed in" do
46
+ @context = Interpreter.new
47
+ @context.disable_all_types
48
+ @context.enable(IntType)
49
+ CodeType.any_type(@context.types).should == IntType
50
+ end
51
+
52
+ it "should default to the list of active types in the context" do
53
+ @context.disable_all_types
54
+ @context.enable(IntType)
55
+ CodeType.any_type(@context.types).should == IntType
56
+ end
57
+
58
+ it "should raise an error if the list of active_types is empty and none is passed in" do
59
+ @context.disable_all_types
60
+ lambda{CodeType.any_type(@context.types)}.should raise_error(ArgumentError)
61
+ end
62
+
63
+ it "should raise an error if the list of types passed in is empty" do
64
+ @context.disable_all_types
65
+ lambda{CodeType.any_type(@context.types)}.should raise_error(ArgumentError)
66
+ end
67
+ end
68
+
69
+
70
+
71
+ describe "any_instruction" do
72
+ before(:each) do
73
+ @context = Interpreter.new
74
+ end
75
+
76
+ it "should return a single sample from the context passed in (no implied validation)" do
77
+ @context.disable_all_instructions
78
+ @context.enable(IntAddInstruction)
79
+ CodeType.any_instruction(@context.instructions).should == IntAddInstruction
80
+ end
81
+
82
+ it "should raise an error if the no instructions are active in the context and none are passed in" do
83
+ @context.disable_all_instructions
84
+ lambda{CodeType.any_instruction(@context.instructions)}.should raise_error(ArgumentError)
85
+ end
86
+ end
87
+
88
+ describe "any_reference" do
89
+ before(:each) do
90
+ @context = Interpreter.new
91
+ end
92
+
93
+ it "should return a random reference from the context" do
94
+ @context.reset_variables
95
+ @context.bind_variable("x",LiteralPoint.new(:int,12))
96
+ CodeType.any_reference(@context.references).should == "x"
97
+ end
98
+
99
+
100
+ it "should raise an error if the list of active references is empty" do
101
+ @context.reset_variables
102
+ @context.reset_names
103
+ lambda{CodeType.any_reference(@context.references)}.should raise_error(ArgumentError)
104
+ end
105
+ end
106
+
107
+
108
+
109
+ describe "#random_value" do
110
+ before(:each) do
111
+ @context = Interpreter.new
112
+ @context.reset_variables
113
+ @context.reset_names
114
+ @context.disable_all_instructions
115
+ @context.disable_all_types
116
+ end
117
+
118
+ describe "skeletons" do
119
+ before(:each) do
120
+ @context.enable(IntType)
121
+ end
122
+
123
+ it "should use a points parameter to set the length" do
124
+ rp = CodeType.random_value(@context,:points => 3)
125
+ end
126
+
127
+ it "should by default generate a random skeleton" do
128
+ CodeType.should_receive(:random_skeleton).and_return("**")
129
+ rp = CodeType.random_value(@context,:points => 2)
130
+ end
131
+
132
+ it "should allow a skeleton to be passed in as a param" do
133
+ CodeType.should_not_receive(:random_skeleton)
134
+ rp = CodeType.random_value(@context,:skeleton => "**")
135
+ end
136
+
137
+ it "should allow a partially filled-in skeleton to be passed in" do
138
+ rp = CodeType.random_value(@context,:skeleton => "* do thing")
139
+ rp.should include(" do thing")
140
+ rp.should_not include("*")
141
+ end
142
+
143
+ it "should always return a one-line program listing (no linefeeds)" do
144
+ rp = CodeType.random_value(@context, :points => 10, :blocks => 5)
145
+ rp.should_not include("\n")
146
+ end
147
+
148
+ it "should use '@' as a placeholder that is not replaced with code" do
149
+ rp = CodeType.random_value(@context, :skeleton => "@ do thing")
150
+ rp.should == "@ do thing"
151
+ end
152
+ end
153
+
154
+ describe "argument checking" do
155
+ it "should raise an ArgumentError if there are no Instructions, References or Types" do
156
+ @context.reset_variables
157
+ @context.reset_names
158
+ @context.disable_all_types
159
+ @context.disable_all_instructions
160
+ lambda{CodeType.random_value(@context)}.should raise_error
161
+ end
162
+ end
163
+
164
+ describe "program leaves" do
165
+ describe "instructions" do
166
+ it "should work when there are no active instructions" do
167
+ @context.bind_variable("x",LiteralPoint.new(:int,12))
168
+ @context.enable(IntType)
169
+ lambda{CodeType.random_value(@context)}.should_not raise_error
170
+ end
171
+
172
+ it "should default to a sample of the active instructions" do
173
+ @context.should_receive(:instructions).and_return([IntAddInstruction])
174
+ CodeType.random_value(@context)
175
+ end
176
+
177
+ it "should allow a list of instructions to be passed in as a param" do
178
+ lambda{CodeType.random_value(@context,:instructions => [IntAddInstruction])}.should_not raise_error
179
+ end
180
+ end
181
+
182
+ describe "channels" do
183
+ it "should work when there are no active channels" do
184
+ @context.enable(IntAddInstruction)
185
+ @context.enable(IntType)
186
+ lambda{CodeType.random_value(@context)}.should_not raise_error
187
+ end
188
+
189
+ it "should default to a sample of active variables and names" do
190
+ @context.should_receive(:references).and_return(["x"])
191
+ CodeType.random_value(@context)
192
+ end
193
+
194
+ it "should allow a list of channel names to be passed in as a param" do
195
+ lambda{CodeType.random_value(@context,:references => ["x"])}.should_not raise_error
196
+ end
197
+ end
198
+
199
+ describe "types" do
200
+ it "should work when there are no active types" do
201
+ @context.bind_variable("x",LiteralPoint.new(:int,12))
202
+ @context.enable(IntAddInstruction)
203
+ lambda{CodeType.random_value(@context)}.should_not raise_error
204
+ end
205
+
206
+ it "should default to a sample of active types" do
207
+ @context.should_receive(:types).and_return([IntType])
208
+ CodeType.random_value(@context)
209
+ end
210
+
211
+ it "should allow a list of types to be passed in as a param" do
212
+ lambda{CodeType.random_value(@context,:types => [BoolType])}.should_not raise_error
213
+ end
214
+ end
215
+ end
216
+ end
217
+
218
+
219
+
220
+ describe "roulette_wheel" do
221
+ it "should take three lists as parameters" do
222
+ lambda{CodeType.roulette_wheel()}.should raise_error
223
+ lambda{CodeType.roulette_wheel([1])}.should raise_error
224
+ lambda{CodeType.roulette_wheel([1],[2])}.should raise_error
225
+ lambda{CodeType.roulette_wheel([1],[2],[3])}.should_not raise_error
226
+ end
227
+
228
+ it "should map its three lists to (references, instructions, types) respectively" do
229
+ CodeType.should_receive(:rand).and_return(1)
230
+ CodeType.roulette_wheel([1],[2],[3]).should == "reference"
231
+ CodeType.should_receive(:rand).and_return(2)
232
+ CodeType.roulette_wheel([1],[2],[3]).should == "instruction"
233
+ CodeType.should_receive(:rand).and_return(3)
234
+ CodeType.roulette_wheel([1],[2],[3]).should == "sample"
235
+ end
236
+
237
+ it "should raise an exception if a bad value is returned (for next spec)" do
238
+ CodeType.should_receive(:rand).and_return(99)
239
+ lambda{CodeType.roulette_wheel([1],[2],[3])}.should raise_error
240
+ end
241
+
242
+ it "should have a uniform probability of picking any item" do
243
+ CodeType.should_receive(:rand).and_return(1)
244
+ CodeType.roulette_wheel([1],[2,3],[4,5,6]).should == "reference"
245
+ CodeType.should_receive(:rand).and_return(3)
246
+ CodeType.roulette_wheel([1],[2,3],[4,5,6]).should == "instruction"
247
+ CodeType.should_receive(:rand).and_return(6)
248
+ CodeType.roulette_wheel([1],[2,3],[4,5,6]).should == "sample"
249
+
250
+ # OK here's the logic: if it's one higher, it'll fail because every entry gets exactly one
251
+ CodeType.should_receive(:rand).and_return(6,7)
252
+ lambda{CodeType.roulette_wheel([1,2,3],[4,5],[6])}.should_not raise_error
253
+ lambda{CodeType.roulette_wheel([1,2,3],[4,5],[6])}.should raise_error
254
+ end
255
+ end
256
+
257
+ end
@@ -0,0 +1,130 @@
1
+ require File.join(File.dirname(__FILE__), "/../spec_helper")
2
+ include Nudge
3
+
4
+ describe "erc" do
5
+ describe "initialization" do
6
+ it "should take a type name with no default value" do
7
+ myE = Erc.new("int",11)
8
+ myE.type.should == :int
9
+ lambda {Erc.new()}.should raise_error(ArgumentError)
10
+ end
11
+
12
+ it "should take an obligatory value param, with no default" do # this is a change of the original specs
13
+ myE = Erc.new("int",-99999)
14
+ myE.value.should == -99999
15
+ lambda{Erc.new("int")}.should raise_error(ArgumentError)
16
+ end
17
+
18
+ it "should set the value as with a LiteralPoint, if it's given" do
19
+ myE = Erc.new("bool",false)
20
+ myE.value.should == false
21
+ end
22
+
23
+ it "should be a kind of program point" do
24
+ myE = Erc.new("bool", true)
25
+ myE.should be_a_kind_of(ProgramPoint)
26
+ end
27
+ end
28
+
29
+ describe "converting to a literal" do
30
+ it "should allow you to cast it to a Literal with the same values" do
31
+ myE = Erc.new("int", 4)
32
+ asL = myE.to_literal
33
+ asL.type.should == :int
34
+ asL.value.should == 4
35
+ end
36
+ end
37
+
38
+ describe "#go" do
39
+ before(:each) do
40
+ @ii = Interpreter.new()
41
+ @ii.clear_stacks
42
+ @ii.stacks[:int] = Stack.new(:int)
43
+ @ii.reset("sample int (999)")
44
+ end
45
+
46
+ it "should pop the exec stack when an Erc is interpreted" do
47
+ oldExec = @ii.stacks[:exec].depth
48
+ @ii.step
49
+ @ii.stacks[:exec].depth.should == (oldExec-1)
50
+ end
51
+
52
+ it "should initialize the right stack for the type of the Erc if it doesn't exist" do
53
+ @ii.stacks.delete(:int)
54
+ @ii.step
55
+ @ii.stacks.should include(:int)
56
+ end
57
+
58
+ it "should use the existing stack if it does exist" do
59
+ @ii.step
60
+ @ii.stacks[:int].depth.should == 1
61
+ end
62
+
63
+ it "should push the value onto the right stack" do
64
+ @ii.stacks[:exec].push(Erc.new("int",3))
65
+ @ii.stacks[:exec].push(Erc.new("float",2.2))
66
+ @ii.stacks[:exec].push(Erc.new("bool",false))
67
+
68
+ 3.times {@ii.step}
69
+ @ii.stacks.should include(:int)
70
+ @ii.stacks.should include(:float)
71
+ @ii.stacks.should include(:bool)
72
+ end
73
+ end
74
+
75
+ describe "#tidy" do
76
+ it "should print 'sample type, value' for Erc#tidy" do
77
+ myE = Erc.new("float", -99.121001)
78
+ myE.tidy.should == "sample float (-99.121001)"
79
+ end
80
+ end
81
+
82
+ describe "randomize" do
83
+ before(:each) do
84
+ @ii = Interpreter.new()
85
+ @ii.enable_all_types
86
+ end
87
+
88
+ it "should return one of the active types (not one of the defined types!)" do
89
+ myErc = LiteralPoint.new("float", -77.89)
90
+ @ii.disable_all_types
91
+ @ii.enable(IntType)
92
+ myErc.randomize(@ii)
93
+ myErc.type.should == "int"
94
+ end
95
+ end
96
+
97
+ describe "#any" do
98
+ before(:each) do
99
+ @ii = Interpreter.new()
100
+ @ii.enable_all_types
101
+ end
102
+
103
+ it "should return a new instance, invoking #randomize" do
104
+ rE = Erc.any(@ii)
105
+ rE.should be_a_kind_of(Erc)
106
+ @ii.disable_all_types
107
+ @ii.enable(BoolType)
108
+ rE = Erc.any(@ii)
109
+ rE.type.should == "bool"
110
+ end
111
+ end
112
+
113
+ describe "#resample" do
114
+ it "should change the value only of the calling Erc instance, not its type" do
115
+ rE = Erc.new("int", 99)
116
+ rE.should be_a_kind_of(Erc)
117
+ IntType.should_receive(:any_value).and_return(2)
118
+ rE.value.should == 99
119
+ rE.resample
120
+ rE.value.should == 2
121
+
122
+ rE = Erc.new("bool", false)
123
+ rE.should be_a_kind_of(Erc)
124
+ BoolType.should_receive(:any_value).and_return(true)
125
+ rE.value.should == false
126
+ rE.resample
127
+ rE.value.should == true
128
+ end
129
+ end
130
+ end