nsrr 0.4.0.beta1 → 6.0.0

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@@ -1,4 +1,22 @@
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- ## 0.4.0
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+ ## 6.0.0 (January 16, 2021)
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+
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+ ### Enhancements
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+ - **General Changes**
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+ - Added compatibility for Ruby 3.0.0
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+
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+ ## 5.0.0 (May 7, 2019)
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+
9
+ ### Enhancements
10
+ - **General Changes**
11
+ - Update to MIT license
12
+ - Update all server requests to use NSRR API v1
13
+ - **Gem Changes**
14
+ - Update to ruby 2.6.3
15
+ - Update to bundler >= 1.3.0
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+ - Update to simplecov 0.16.1
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+ - Remove colorize
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+
19
+ ## 0.4.0 (December 13, 2016)
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20
 
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  ### Enhancements
4
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  - **Gem Changes**
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+ Copyright (c) 2016-2021 National Sleep Research Resource
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+ Permission is hereby granted, free of charge, to any person obtaining
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+ a copy of this software and associated documentation files (the
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data/README.md CHANGED
@@ -1,18 +1,17 @@
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1
  # NSRR Ruby Gem
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2
 
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- [![Build Status](https://travis-ci.org/nsrr/nsrr-gem.svg?branch=master)](https://travis-ci.org/nsrr/nsrr-gem)
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- [![Dependency Status](https://gemnasium.com/nsrr/nsrr-gem.svg)](https://gemnasium.com/nsrr/nsrr-gem)
3
+ [![Build Status](https://travis-ci.com/nsrr/nsrr-gem.svg?branch=master)](https://travis-ci.com/nsrr/nsrr-gem)
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4
  [![Code Climate](https://codeclimate.com/github/nsrr/nsrr-gem/badges/gpa.svg)](https://codeclimate.com/github/nsrr/nsrr-gem)
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7
6
  The official ruby gem built to simplify file downloads and dataset integration tasks for the [National Sleep Research Resource](https://sleepdata.org).
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9
8
  ## Prerequisites
10
9
 
11
- You must have **Ruby 2.2+ installed** on your system to use the NSRR gem.
10
+ You must have **Ruby 2.4+ installed** on your system to use the NSRR gem.
12
11
 
13
- - [Install Ruby on Windows](http://rubyinstaller.org/)
14
- - [Install Ruby on Mac](https://github.com/remomueller/documentation/blob/master/macosx/140-install-ruby.md)
15
- - [Install Ruby on Linux (CentOS)](https://github.com/remomueller/documentation/blob/master/centos/140-install-ruby.md)
12
+ - [Install Ruby on Windows](https://github.com/remomueller/documentation/blob/master/windows/130-ruby.md)
13
+ - [Install Ruby on Mac](https://github.com/remomueller/documentation/blob/master/macos/130-install-rvm.md)
14
+ - [Install Ruby on Linux (CentOS)](https://github.com/remomueller/documentation/blob/master/centos/130-install-rvm.md)
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17
16
  ## Installation
18
17
 
@@ -24,14 +23,6 @@ Install it yourself as:
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23
  gem install nsrr --no-document
25
24
  ```
26
25
 
27
- **NOTE:** There is a bug in newer versions of RubyGems that prevent the NSRR gem
28
- from running correctly. If you run into issues, downgrade RubyGems using the
29
- following command:
30
-
31
- ```console
32
- gem update --system 2.4.8 --no-document
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- ```
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-
35
26
  ## Usage
36
27
 
37
28
  ### Download files from a dataset
@@ -81,7 +72,7 @@ nsrr console
81
72
  ```
82
73
 
83
74
  ```
84
- d = Dataset.find 'shhs'
75
+ d = Dataset.find "shhs"
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76
  d.download
86
77
  Get your token here: https://sleepdata.org/token
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78
  Your input is hidden while entering token.
@@ -100,24 +91,24 @@ d.download
100
91
  ```
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92
 
102
93
  **method**
103
- - 'md5' [default]
94
+ - "md5" [default]
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95
  - Checks if a downloaded file exists with the exact md5 as the online version, if so, skips that file
105
- - 'fresh'
96
+ - "fresh"
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  - Downloads every file without checking if it was already downloaded
107
- - 'fast'
98
+ - "fast"
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99
  - Only checks if a download file exists with the same file size as the online version, if so, skips that file
109
100
 
110
101
  **depth**
111
- - 'recursive' [default]
102
+ - "recursive" [default]
112
103
  - Downloads files in selected path folder and all subfolders
113
- - 'shallow'
104
+ - "shallow"
114
105
  - Only downloads files in selected path folder
115
106
 
116
107
  For example to download only the shhs1 edfs folder and skip MD5 file validation:
117
108
 
118
109
  ```
119
- d = Dataset.find 'shhs'
120
- d.download('edfs/shhs1', method: 'fast', depth: 'shallow')
110
+ d = Dataset.find "shhs"
111
+ d.download("edfs/shhs1", method: "fast", depth: "shallow")
121
112
 
122
113
  Get your token here: https://sleepdata.org/token
123
114
  Your input is hidden while entering token.
@@ -136,7 +127,7 @@ d.download('edfs/shhs1', method: 'fast', depth: 'shallow')
136
127
  You can type `Ctrl-C` to pause the download, and retype the command to restart:
137
128
 
138
129
  ```
139
- d = Dataset.find 'shhs'
130
+ d = Dataset.find "shhs"
140
131
  d.download
141
132
 
142
133
  Get your token here: https://sleepdata.org/token
@@ -208,32 +199,3 @@ location the files are being downloaded to (a root directory C: for example).
208
199
  It is recommended to use the gem without elevated privileges first in any case
209
200
  (to download directly to Desktop for example) before using admin privileges for
210
201
  the Ruby gem.
211
-
212
- ### Issue "'method_missing': undefined method 'this'" when running NSRR commands
213
-
214
- There is a bug in newer versions of RubyGems that prevent the NSRR gem
215
- from running correctly. If you run into issues, downgrade RubyGems using the
216
- following command:
217
-
218
- The following versions of RubyGems cause issues while running NSRR commands:
219
-
220
- - `2.5.0`
221
- - `2.5.1`
222
- - `2.5.2`
223
- - `2.6.0`
224
- - `2.6.1`
225
- - `2.6.2`
226
-
227
- You can check which version you have installed by typing:
228
-
229
- ```console
230
- gem -v
231
- ```
232
-
233
- You can fix this error by reverting to the last stable version of RubyGems,
234
- `2.4.8`. Note: RubyGems `2.6.3` also includes a fix to this issue.
235
-
236
- ```console
237
- gem update --system 2.4.8 --no-document
238
- ```
239
-
data/Rakefile CHANGED
@@ -1,11 +1,11 @@
1
1
  # frozen_string_literal: true
2
2
 
3
- require 'rake/testtask'
3
+ require "rake/testtask"
4
4
 
5
5
  Rake::TestTask.new(:test) do |t|
6
- t.libs << 'lib'
7
- t.libs << 'test'
8
- t.pattern = 'test/**/*_test.rb'
6
+ t.libs << "lib"
7
+ t.libs << "test"
8
+ t.pattern = "test/**/*_test.rb"
9
9
  t.verbose = false
10
10
  t.warning = false
11
11
  end
data/bin/nsrr CHANGED
@@ -1,6 +1,6 @@
1
1
  #!/usr/bin/env ruby
2
2
  # frozen_string_literal: true
3
3
 
4
- require File.expand_path('../../lib/nsrr', __FILE__)
4
+ require File.expand_path("../lib/nsrr", __dir__)
5
5
 
6
6
  Nsrr.launch(ARGV)
@@ -1,13 +1,13 @@
1
1
  # frozen_string_literal: true
2
2
 
3
- require 'colorize'
4
- require 'nsrr/version'
3
+ require "nsrr/helpers/color"
4
+ require "nsrr/version"
5
5
 
6
6
  Nsrr::COMMANDS = {
7
- 'c' => :console,
8
- 'd' => :download,
9
- 'u' => :update,
10
- 'v' => :version
7
+ "c" => :console,
8
+ "d" => :download,
9
+ "u" => :update,
10
+ "v" => :version
11
11
  }.freeze
12
12
 
13
13
  # Exposes certain commands for access from the command line.
@@ -17,17 +17,17 @@ module Nsrr
17
17
  end
18
18
 
19
19
  def self.console(argv)
20
- require 'nsrr/commands/console'
20
+ require "nsrr/commands/console"
21
21
  Nsrr::Commands::Console.start(argv)
22
22
  end
23
23
 
24
24
  def self.download(argv)
25
- require 'nsrr/commands/download'
25
+ require "nsrr/commands/download"
26
26
  Nsrr::Commands::Download.run(argv)
27
27
  end
28
28
 
29
29
  def self.update(argv)
30
- require 'nsrr/commands/update'
30
+ require "nsrr/commands/update"
31
31
  Nsrr::Commands::Update.start(argv)
32
32
  end
33
33
 
@@ -47,8 +47,8 @@ Commands can be referenced by the first letter:
47
47
  Ex: `nsrr v`, for version
48
48
 
49
49
  EOT
50
- puts 'Read more on the download command here:'
51
- puts ' ' + 'https://github.com/nsrr/nsrr-gem'.colorize(:blue).on_white.underline
50
+ puts "Read more on the download command here:"
51
+ puts " " + "https://github.com/nsrr/nsrr-gem".bg_gray.blue.underline
52
52
  puts "\n"
53
53
  end
54
54
 
@@ -1,8 +1,8 @@
1
1
  # frozen_string_literal: true
2
2
 
3
- require 'irb'
4
- require 'irb/completion'
5
- require 'nsrr/models/all'
3
+ require "irb"
4
+ require "irb/completion"
5
+ require "nsrr/models/all"
6
6
 
7
7
  module Nsrr
8
8
  module Commands
@@ -1,8 +1,8 @@
1
1
  # frozen_string_literal: true
2
2
 
3
- require 'colorize'
4
- require 'nsrr/models/all'
5
- require 'nsrr/helpers/authorization'
3
+ require "nsrr/models/all"
4
+ require "nsrr/helpers/authorization"
5
+ require "nsrr/helpers/color"
6
6
 
7
7
  module Nsrr
8
8
  module Commands
@@ -18,53 +18,72 @@ module Nsrr
18
18
  attr_reader :token, :dataset_slug, :full_path, :file_comparison, :depth
19
19
 
20
20
  def initialize(argv)
21
- (@token, argv) = parse_parameter_with_value(argv, ['token'], '')
22
- (@file_comparison, argv) = parse_parameter(argv, ['fast', 'fresh', 'md5'], 'md5')
23
- (@depth, argv) = parse_parameter(argv, ['shallow', 'recursive'], 'recursive')
24
- @dataset_slug = argv[1].to_s.split('/').first
25
- @full_path = (argv[1].to_s.split('/')[1..-1] || []).join('/')
21
+ (@token, argv) = parse_parameter_with_value(argv, ["token"], "")
22
+ (@file_comparison, argv) = parse_parameter(argv, ["fast", "fresh", "md5"], "md5")
23
+ (@depth, argv) = parse_parameter(argv, ["shallow", "recursive"], "recursive")
24
+ @dataset_slug = argv[1].to_s.split("/").first
25
+ @full_path = (argv[1].to_s.split("/")[1..-1] || []).join("/")
26
26
  end
27
27
 
28
28
  # Run with Authorization
29
29
  def run
30
30
  if @dataset_slug.nil?
31
- puts 'Please specify a dataset: ' + 'nsrr download DATASET'.colorize(:white)
32
- puts 'Read more on the download command here:'
33
- puts ' ' + 'https://github.com/nsrr/nsrr-gem'.colorize(:blue).on_white.underline
31
+ puts "Please specify a dataset: " + "nsrr download DATASET".white
32
+ puts "Read more on the download command here:"
33
+ puts " " + "https://github.com/nsrr/nsrr-gem".bg_gray.blue.underline
34
34
  else
35
- @token = Nsrr::Helpers::Authorization.get_token(@token) if @token.to_s == ''
35
+ @token = Nsrr::Helpers::Authorization.get_token(@token) if @token.to_s == ""
36
36
  @dataset = Dataset.find(@dataset_slug, @token)
37
37
  if @dataset
38
38
  @dataset.download(@full_path, depth: @depth, method: @file_comparison)
39
39
  else
40
- puts "\nThe dataset " + @dataset_slug.to_s.colorize(:white) + ' was not found.'
41
- (datasets, _status) = Nsrr::Helpers::JsonRequest.get("#{Nsrr::WEBSITE}/datasets.json", auth_token: @token)
42
- puts "Did you mean one of: #{datasets.collect { |d| d['slug'].colorize(:white)}.sort.join(', ') }" if datasets && datasets.size > 0
40
+ puts "\nThe dataset " + @dataset_slug.white + " was not found."
41
+ datasets = all_datasets
42
+ return if datasets.empty?
43
+
44
+ puts "Did you mean one of: #{datasets.collect { |d| d["slug"].white }.sort.join(", ")}"
43
45
  end
44
46
  end
45
47
  rescue Interrupt
46
- puts "\nINTERRUPTED".colorize(:red)
48
+ puts "\nINTERRUPTED".red
47
49
  end
48
50
 
49
51
  private
50
52
 
53
+ def all_datasets
54
+ datasets = []
55
+ page = 1
56
+ loop do
57
+ new_datasets = datasets_on_page(page)
58
+ datasets += new_datasets
59
+ page += 1
60
+ break unless new_datasets.size == 10
61
+ end
62
+ datasets
63
+ end
64
+
65
+ def datasets_on_page(page)
66
+ params = { auth_token: @token, page: page }
67
+ (datasets, _status) = Nsrr::Helpers::JsonRequest.get("#{Nsrr::WEBSITE}/api/v1/datasets.json", params)
68
+ datasets || []
69
+ end
70
+
51
71
  def parse_parameter(argv, options, default)
52
72
  result = default
53
73
  options.each do |option|
54
74
  result = option if argv.delete "--#{option}"
55
75
  end
56
- return [result, argv]
76
+ [result, argv]
57
77
  end
58
78
 
59
79
  def parse_parameter_with_value(argv, options, default)
60
80
  result = default
61
81
  options.each do |option|
62
82
  argv.each do |arg|
63
- result = arg.gsub(/^--#{option}=/, '') if arg =~ /^--#{option}=\w/
83
+ result = arg.gsub(/^--#{option}=/, "") if arg =~ /^--#{option}=\w/
64
84
  end
65
85
  end
66
-
67
- return [result, argv]
86
+ [result, argv]
68
87
  end
69
88
  end
70
89
  end