npsearch 2.1.1 → 2.1.2
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/.gitignore +3 -1
- data/lib/npsearch/signalp.rb +8 -2
- data/lib/npsearch/version.rb +1 -1
- data/npsearch.gemspec +2 -3
- metadata +4 -8
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 036557512365e70a5fcc7cb9ca30134db25bfc70
|
|
4
|
+
data.tar.gz: af59a6031d843d7244820d1a7be721db542e6617
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 372005332db090e60d2012a7ffda5c0fea85143185a0fcdc47a1f7a52bc7dafdde7dc3555fc309a48dbdb7e969d3af95f99ba3c9506f565ad760c08418c40b16
|
|
7
|
+
data.tar.gz: 13b0ff78295b3b12400883f84e9119ce867474b76dabd8b7d57820a2d594e5ece81c6555c23c568aebb418021bcd1e1317f9ef449af3e8b5e74193d53ad89857
|
data/.gitignore
CHANGED
data/lib/npsearch/signalp.rb
CHANGED
|
@@ -29,9 +29,15 @@ module NpSearch
|
|
|
29
29
|
" -f short -U 0.34 -u 0.34"
|
|
30
30
|
stdin, stdout, stderr, wait_thr = Open3.popen3(cmd)
|
|
31
31
|
out = stdout.gets(nil).split("\n").delete_if { |l| l[0] == '#' }
|
|
32
|
+
if out.nil? || out.empty?
|
|
33
|
+
print stdout
|
|
34
|
+
print stderr
|
|
35
|
+
raise ArgumentError, 'Signalp failed to run sucessfully :('
|
|
36
|
+
else
|
|
37
|
+
result = out[0] + ' ' + seq
|
|
38
|
+
return Hash[sp_headers.map(&:to_sym).zip(result.split)]
|
|
39
|
+
end
|
|
32
40
|
stdin.close; stdout.close; stderr.close
|
|
33
|
-
result = out[0] + ' ' + seq
|
|
34
|
-
return Hash[sp_headers.map(&:to_sym).zip(result.split)]
|
|
35
41
|
end
|
|
36
42
|
rescue Timeout::Error
|
|
37
43
|
no_results = [0,0,1,1,1,1,1,1,1,'N',1,1, seq]
|
data/lib/npsearch/version.rb
CHANGED
data/npsearch.gemspec
CHANGED
|
@@ -6,9 +6,8 @@ require 'npsearch/version'
|
|
|
6
6
|
Gem::Specification.new do |s|
|
|
7
7
|
s.name = 'npsearch'
|
|
8
8
|
s.version = NpSearch::VERSION
|
|
9
|
-
s.authors = ['
|
|
10
|
-
|
|
11
|
-
s.email = ['y.wurm@qmul.ac.uk']
|
|
9
|
+
s.authors = ['Moghul et al.']
|
|
10
|
+
s.email = ['ismail.moghul@gmail.com']
|
|
12
11
|
s.description = 'Search for Neuropeptides based solely on the common' \
|
|
13
12
|
' neuropeptide markers (e.g. signal peptide, dibasic' \
|
|
14
13
|
' cleavage sites etc.) i.e. not based on homology to' \
|
metadata
CHANGED
|
@@ -1,18 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: npsearch
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 2.1.
|
|
4
|
+
version: 2.1.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
|
-
-
|
|
8
|
-
- Matthew Rowe
|
|
9
|
-
- Anurag Priyam
|
|
10
|
-
- Maurice Elphick
|
|
11
|
-
- Yannick Wurm
|
|
7
|
+
- Moghul et al.
|
|
12
8
|
autorequire:
|
|
13
9
|
bindir: bin
|
|
14
10
|
cert_chain: []
|
|
15
|
-
date: 2016-11-
|
|
11
|
+
date: 2016-11-13 00:00:00.000000000 Z
|
|
16
12
|
dependencies:
|
|
17
13
|
- !ruby/object:Gem::Dependency
|
|
18
14
|
name: bundler
|
|
@@ -103,7 +99,7 @@ description: |-
|
|
|
103
99
|
|
|
104
100
|
For more information: https://github.com/wurmlab/npsearch
|
|
105
101
|
email:
|
|
106
|
-
-
|
|
102
|
+
- ismail.moghul@gmail.com
|
|
107
103
|
executables:
|
|
108
104
|
- npsearch
|
|
109
105
|
extensions: []
|