npsearch 2.1.1 → 2.1.2
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- checksums.yaml +4 -4
- data/.gitignore +3 -1
- data/lib/npsearch/signalp.rb +8 -2
- data/lib/npsearch/version.rb +1 -1
- data/npsearch.gemspec +2 -3
- metadata +4 -8
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 036557512365e70a5fcc7cb9ca30134db25bfc70
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4
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+
data.tar.gz: af59a6031d843d7244820d1a7be721db542e6617
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 372005332db090e60d2012a7ffda5c0fea85143185a0fcdc47a1f7a52bc7dafdde7dc3555fc309a48dbdb7e969d3af95f99ba3c9506f565ad760c08418c40b16
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7
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+
data.tar.gz: 13b0ff78295b3b12400883f84e9119ce867474b76dabd8b7d57820a2d594e5ece81c6555c23c568aebb418021bcd1e1317f9ef449af3e8b5e74193d53ad89857
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data/.gitignore
CHANGED
data/lib/npsearch/signalp.rb
CHANGED
@@ -29,9 +29,15 @@ module NpSearch
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29
29
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" -f short -U 0.34 -u 0.34"
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30
30
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stdin, stdout, stderr, wait_thr = Open3.popen3(cmd)
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31
31
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out = stdout.gets(nil).split("\n").delete_if { |l| l[0] == '#' }
|
32
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+
if out.nil? || out.empty?
|
33
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+
print stdout
|
34
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+
print stderr
|
35
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+
raise ArgumentError, 'Signalp failed to run sucessfully :('
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36
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+
else
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37
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+
result = out[0] + ' ' + seq
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38
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+
return Hash[sp_headers.map(&:to_sym).zip(result.split)]
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39
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+
end
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32
40
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stdin.close; stdout.close; stderr.close
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33
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-
result = out[0] + ' ' + seq
|
34
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-
return Hash[sp_headers.map(&:to_sym).zip(result.split)]
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35
41
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end
|
36
42
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rescue Timeout::Error
|
37
43
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no_results = [0,0,1,1,1,1,1,1,1,'N',1,1, seq]
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data/lib/npsearch/version.rb
CHANGED
data/npsearch.gemspec
CHANGED
@@ -6,9 +6,8 @@ require 'npsearch/version'
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6
6
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Gem::Specification.new do |s|
|
7
7
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s.name = 'npsearch'
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8
8
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s.version = NpSearch::VERSION
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9
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-
s.authors = ['
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10
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-
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11
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-
s.email = ['y.wurm@qmul.ac.uk']
|
9
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+
s.authors = ['Moghul et al.']
|
10
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+
s.email = ['ismail.moghul@gmail.com']
|
12
11
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s.description = 'Search for Neuropeptides based solely on the common' \
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13
12
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' neuropeptide markers (e.g. signal peptide, dibasic' \
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14
13
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' cleavage sites etc.) i.e. not based on homology to' \
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metadata
CHANGED
@@ -1,18 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: npsearch
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 2.1.
|
4
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+
version: 2.1.2
|
5
5
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platform: ruby
|
6
6
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authors:
|
7
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-
-
|
8
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-
- Matthew Rowe
|
9
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-
- Anurag Priyam
|
10
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-
- Maurice Elphick
|
11
|
-
- Yannick Wurm
|
7
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+
- Moghul et al.
|
12
8
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autorequire:
|
13
9
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bindir: bin
|
14
10
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cert_chain: []
|
15
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-
date: 2016-11-
|
11
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+
date: 2016-11-13 00:00:00.000000000 Z
|
16
12
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dependencies:
|
17
13
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- !ruby/object:Gem::Dependency
|
18
14
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name: bundler
|
@@ -103,7 +99,7 @@ description: |-
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|
103
99
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|
104
100
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For more information: https://github.com/wurmlab/npsearch
|
105
101
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email:
|
106
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-
-
|
102
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+
- ismail.moghul@gmail.com
|
107
103
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executables:
|
108
104
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- npsearch
|
109
105
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extensions: []
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