nmatrix_extras 0.0.4.1
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- checksums.yaml +15 -0
- data/.gitignore +17 -0
- data/.rspec +2 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +20 -0
- data/README.md +35 -0
- data/Rakefile +7 -0
- data/lib/nmatrix_extras.rb +29 -0
- data/lib/nmatrix_extras/nmatrix.rb +155 -0
- data/lib/nmatrix_extras/version.rb +3 -0
- data/nmatrix_extras.gemspec +22 -0
- data/spec/nmatrix_extras_spec.rb +120 -0
- metadata +113 -0
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data/.gitignore
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data/.rspec
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data/Gemfile
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data/LICENSE.txt
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Copyright (c) 2013 Colin J. Fuller
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/README.md
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# NmatrixExtras
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Convenience functions for NMatrix, including some like mean, min, max, present in numpy, as well as mapping and reduction functions.
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## Installation
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Add this line to your application's Gemfile:
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gem 'nmatrix_extras'
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And then execute:
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$ bundle
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Or install it yourself as:
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$ gem install nmatrix_extras
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## Usage
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require 'nmatrix_extras'
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This will add the extra methods to the NMatrix class.
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## Contributing
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1. Fork it
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2. Create your feature branch (`git checkout -b my-new-feature`)
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3. Commit your changes (`git commit -am 'Add some feature'`)
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4. Push to the branch (`git push origin my-new-feature`)
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5. Create new Pull Request
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##License
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Licensed under the MIT/X11 license. See LICENSE.txt for the full license text.
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data/Rakefile
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#--
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# Copyright (c) 2013 Colin J. Fuller
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the Software), to deal
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# in the Software without restriction, including without limitation the rights
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# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the Software is
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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# SOFTWARE.
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#++
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require "nmatrix_extras/version"
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require "nmatrix_extras/nmatrix"
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class NMatrix
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include Enumerable
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include NMatrixExtras
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end
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#--
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# Copyright (c) 2013 Colin J. Fuller
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the Software), to deal
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# in the Software without restriction, including without limitation the rights
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# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the Software is
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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# SOFTWARE.
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#++
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require 'nmatrix'
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module NMatrixExtras
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##
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# Successively yields submatrices at each coordinate along a specified dimension. Each submatrix will have the same number of dimensions as the matrix being iterated,
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# but with the specified dimension's size equal to 1.
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#
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# @param [Integer] dim the dimension being iterated over.
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#
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def each_along_dim(dim=0)
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dims = shape
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shape.each_index { |i| dims[i] = 0...(shape[i]) unless i == dim }
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0.upto(shape[dim]-1) do |i|
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dims[dim] = i
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yield self[*dims]
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end
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end
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##
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# Reduces an NMatrix using a supplied block over a specified dimension. The block should behave the same way as for Enumerable#reduce.
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#
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# @param [Integer] dim the dimension being reduced
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# @param [Numeric] initial the initial value for the reduction (i.e. the usual parameter to Enumerable#reduce). Note that unlike Enumerable#reduce, if not specified, this will default to 0.0.
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#
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# @return [NMatrix] an NMatrix with the same number of dimensions as the input, but with the input dimension now having size 1.
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# Each element is the result of the reduction at that position along the specified dimension.
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#
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def reduce_along_dim(dim=0, initial=0.0, &bl)
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if dim > shape.size then
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raise ArgumentError, "Requested dimension does not exist. Requested: #{dim}, shape: #{shape}"
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end
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new_shape = shape
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new_shape[dim] = 1
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acc = NMatrix.new(new_shape, initial)
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each_along_dim(dim) do |sub_mat|
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acc = bl.call(acc, sub_mat)
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end
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acc
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end
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##
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# Calculates the mean along the specified dimension.
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#
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# @see #reduce_along_dim
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#
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def mean(dim=0)
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reduce_along_dim(dim, 0.0) do |mean, sub_mat|
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mean + sub_mat/shape[dim]
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end
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end
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##
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# Calculates the minimum along the specified dimension.
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#
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# @see #reduce_along_dim
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#
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def min(dim=0)
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reduce_along_dim(dim, Float::MAX) do |min, sub_mat|
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min * (min <= sub_mat) + ((min)*0.0 + (min > sub_mat)) * sub_mat
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end
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end
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##
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# Calculates the maximum along the specified dimension.
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#
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# @see #reduce_along_dim
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#
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def max(dim=0)
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reduce_along_dim(dim, -1.0*Float::MAX) do |max, sub_mat|
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max * (max >= sub_mat) + ((max)*0.0 + (max < sub_mat)) * sub_mat
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end
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end
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##
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# Calculates the median along the specified dimension.
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#
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# Not yet implemented.
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#
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# @see #reduce_along_dim
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#
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def median(dim=0)
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raise NotImplementedError, "median not yet implemented"
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end
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##
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# Calculates the sample variance along the specified dimension.
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#
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# @see #reduce_along_dim
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#
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def variance(dim=0)
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m = mean(dim)
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reduce_along_dim(dim, 0.0) do |var, sub_mat|
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var + (m - sub_mat)*(m - sub_mat)/(shape[dim]-1)
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end
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end
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##
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# Converts an nmatrix with a single element (but any number of dimensions) to a float.
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#
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# Raises an IndexError if the matrix does not have just a single element.
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#
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def to_f
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raise IndexError, 'to_f only valid for matrices with a single element' unless shape.all? { |e| e == 1 }
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self[*Array.new(shape.size, 0)]
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end
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##
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# See Enumerable#map
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#
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def map(&bl)
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cp = self.dup
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cp.map! &bl
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cp
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end
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##
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# Maps in place.
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# See #map
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#
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def map!
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self.each_stored_with_indices do |e, *i|
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self[*i] = (yield e)
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end
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end
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end
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# coding: utf-8
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lib = File.expand_path('../lib', __FILE__)
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$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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require 'nmatrix_extras/version'
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Gem::Specification.new do |spec|
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spec.name = "nmatrix_extras"
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spec.version = NmatrixExtras::VERSION
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spec.authors = ["Colin J. Fuller"]
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spec.email = ["cjfuller@gmail.com"]
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spec.description = %q{Extra functions for nmatrix}
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spec.summary = %q{Adds a number of basic functions present in numpy to nmatrix and adds mapping and reduction.}
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spec.homepage = ""
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spec.license = "MIT"
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spec.files = `git ls-files`.split($/)
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spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
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spec.require_paths = ["lib"]
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spec.add_development_dependency "bundler", "~> 1.3"
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spec.add_development_dependency "rake"
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spec.add_development_dependency "rspec"
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spec.add_runtime_dependency "nmatrix", ">= 0.0.4"
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end
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#--
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# Copyright (c) 2013 Colin J. Fuller
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the Software), to deal
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# in the Software without restriction, including without limitation the rights
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# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
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# copies of the Software, and to permit persons to whom the Software is
|
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
|
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+
#
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# THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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# SOFTWARE.
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#++
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require 'nmatrix'
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require 'nmatrix_extras'
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describe NMatrix do
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before :each do
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@nm_1d = N[5.0,0.0,1.0,2.0,3.0]
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@nm_2d = N[[0.0,1.0],[2.0,3.0]]
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end
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context "_like constructors" do
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it "should create an nmatrix of ones with dimensions and type the same as its argument" do
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pending
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end
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it "should create an nmatrix of zeros with dimensions and type the same as its argument" do
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pending
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end
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end
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it "should calculate the mean along the specified dimension" do
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@nm_1d.mean.should eq N[2.2]
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@nm_2d.mean.should eq N[[1.0,2.0]]
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end
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it "should calculate the minimum along the specified dimension" do
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@nm_1d.min.should eq N[0.0]
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@nm_2d.min.should eq N[[0.0, 1.0]]
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@nm_2d.min(1).should eq N[[0.0], [2.0]]
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end
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it "should calculate the maximum along the specified dimension" do
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@nm_1d.max.should eq N[5.0]
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@nm_2d.max.should eq N[[2.0, 3.0]]
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end
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it "should calculate the median along the specified dimension" do
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@nm_1d.median.should eq N[2.0]
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@nm_2d.median(1).should eq N[[0.5], [2.5]]
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end
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|
+
it "should calculate the variance along the specified dimension" do
|
68
|
+
@nm_1d.variance.should eq N[3.7]
|
69
|
+
@nm_2d.variance(1).should eq N[[0.5], [0.5]]
|
70
|
+
end
|
71
|
+
|
72
|
+
it "should calculate the sum along the specified dimension" do
|
73
|
+
pending
|
74
|
+
end
|
75
|
+
|
76
|
+
it "should calculate the standard deviation along the specified dimension" do
|
77
|
+
pending
|
78
|
+
end
|
79
|
+
|
80
|
+
it "should calculate the correlation coefficient with another same-sized nmatrix" do
|
81
|
+
pending
|
82
|
+
end
|
83
|
+
|
84
|
+
it "should calculate the covariance with another same-sized nmatrix" do
|
85
|
+
pending
|
86
|
+
end
|
87
|
+
|
88
|
+
it "should raise an ArgumentError when any invalid dimension is provided" do
|
89
|
+
pending
|
90
|
+
end
|
91
|
+
|
92
|
+
it "should convert to float if it contains only a single element" do
|
93
|
+
N[4.0].to_f.should eq 4.0
|
94
|
+
N[[[[4.0]]]].to_f.should eq 4.0
|
95
|
+
end
|
96
|
+
|
97
|
+
it "should raise an index error if it contains more than a single element" do
|
98
|
+
expect { @nm_1d.to_f }.to raise_error(IndexError)
|
99
|
+
end
|
100
|
+
|
101
|
+
it "should map a block to all elements" do
|
102
|
+
@nm_1d.map { |e| e ** 2 }.should eq N[25.0,0.0,1.0,4.0,9.0]
|
103
|
+
@nm_2d.map { |e| e ** 2 }.should eq N[[0.0,1.0],[4.0,9.0]]
|
104
|
+
end
|
105
|
+
|
106
|
+
it "should map! a block to all elements in place" do
|
107
|
+
fct = Proc.new { |e| e ** 2 }
|
108
|
+
expected1 = @nm_1d.map &fct
|
109
|
+
expected2 = @nm_2d.map &fct
|
110
|
+
@nm_1d.map! &fct
|
111
|
+
@nm_1d.should eq expected1
|
112
|
+
@nm_2d.map! &fct
|
113
|
+
@nm_2d.should eq expected2
|
114
|
+
end
|
115
|
+
|
116
|
+
|
117
|
+
|
118
|
+
end
|
119
|
+
|
120
|
+
|
metadata
ADDED
@@ -0,0 +1,113 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: nmatrix_extras
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.0.4.1
|
5
|
+
platform: ruby
|
6
|
+
authors:
|
7
|
+
- Colin J. Fuller
|
8
|
+
autorequire:
|
9
|
+
bindir: bin
|
10
|
+
cert_chain: []
|
11
|
+
date: 2013-05-02 00:00:00.000000000 Z
|
12
|
+
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: bundler
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - ~>
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: '1.3'
|
20
|
+
type: :development
|
21
|
+
prerelease: false
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
23
|
+
requirements:
|
24
|
+
- - ~>
|
25
|
+
- !ruby/object:Gem::Version
|
26
|
+
version: '1.3'
|
27
|
+
- !ruby/object:Gem::Dependency
|
28
|
+
name: rake
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
30
|
+
requirements:
|
31
|
+
- - ! '>='
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: '0'
|
34
|
+
type: :development
|
35
|
+
prerelease: false
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
37
|
+
requirements:
|
38
|
+
- - ! '>='
|
39
|
+
- !ruby/object:Gem::Version
|
40
|
+
version: '0'
|
41
|
+
- !ruby/object:Gem::Dependency
|
42
|
+
name: rspec
|
43
|
+
requirement: !ruby/object:Gem::Requirement
|
44
|
+
requirements:
|
45
|
+
- - ! '>='
|
46
|
+
- !ruby/object:Gem::Version
|
47
|
+
version: '0'
|
48
|
+
type: :development
|
49
|
+
prerelease: false
|
50
|
+
version_requirements: !ruby/object:Gem::Requirement
|
51
|
+
requirements:
|
52
|
+
- - ! '>='
|
53
|
+
- !ruby/object:Gem::Version
|
54
|
+
version: '0'
|
55
|
+
- !ruby/object:Gem::Dependency
|
56
|
+
name: nmatrix
|
57
|
+
requirement: !ruby/object:Gem::Requirement
|
58
|
+
requirements:
|
59
|
+
- - ! '>='
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: 0.0.4
|
62
|
+
type: :runtime
|
63
|
+
prerelease: false
|
64
|
+
version_requirements: !ruby/object:Gem::Requirement
|
65
|
+
requirements:
|
66
|
+
- - ! '>='
|
67
|
+
- !ruby/object:Gem::Version
|
68
|
+
version: 0.0.4
|
69
|
+
description: Extra functions for nmatrix
|
70
|
+
email:
|
71
|
+
- cjfuller@gmail.com
|
72
|
+
executables: []
|
73
|
+
extensions: []
|
74
|
+
extra_rdoc_files: []
|
75
|
+
files:
|
76
|
+
- .gitignore
|
77
|
+
- .rspec
|
78
|
+
- Gemfile
|
79
|
+
- LICENSE.txt
|
80
|
+
- README.md
|
81
|
+
- Rakefile
|
82
|
+
- lib/nmatrix_extras.rb
|
83
|
+
- lib/nmatrix_extras/nmatrix.rb
|
84
|
+
- lib/nmatrix_extras/version.rb
|
85
|
+
- nmatrix_extras.gemspec
|
86
|
+
- spec/nmatrix_extras_spec.rb
|
87
|
+
homepage: ''
|
88
|
+
licenses:
|
89
|
+
- MIT
|
90
|
+
metadata: {}
|
91
|
+
post_install_message:
|
92
|
+
rdoc_options: []
|
93
|
+
require_paths:
|
94
|
+
- lib
|
95
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
96
|
+
requirements:
|
97
|
+
- - ! '>='
|
98
|
+
- !ruby/object:Gem::Version
|
99
|
+
version: '0'
|
100
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
101
|
+
requirements:
|
102
|
+
- - ! '>='
|
103
|
+
- !ruby/object:Gem::Version
|
104
|
+
version: '0'
|
105
|
+
requirements: []
|
106
|
+
rubyforge_project:
|
107
|
+
rubygems_version: 2.0.3
|
108
|
+
signing_key:
|
109
|
+
specification_version: 4
|
110
|
+
summary: Adds a number of basic functions present in numpy to nmatrix and adds mapping
|
111
|
+
and reduction.
|
112
|
+
test_files:
|
113
|
+
- spec/nmatrix_extras_spec.rb
|