nmatrix 0.2.1 → 0.2.3
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- checksums.yaml +4 -4
- data/ext/nmatrix/data/data.cpp +9 -9
- data/ext/nmatrix/data/data.h +7 -8
- data/ext/nmatrix/data/ruby_object.h +1 -4
- data/ext/nmatrix/extconf.rb +9 -127
- data/ext/nmatrix/math.cpp +25 -25
- data/ext/nmatrix/math/asum.h +10 -31
- data/ext/nmatrix/math/cblas_templates_core.h +10 -10
- data/ext/nmatrix/math/getrf.h +2 -2
- data/ext/nmatrix/math/imax.h +12 -9
- data/ext/nmatrix/math/laswp.h +3 -3
- data/ext/nmatrix/math/long_dtype.h +16 -3
- data/ext/nmatrix/math/magnitude.h +54 -0
- data/ext/nmatrix/math/nrm2.h +19 -14
- data/ext/nmatrix/math/trsm.h +40 -36
- data/ext/nmatrix/math/util.h +14 -0
- data/ext/nmatrix/nmatrix.h +39 -1
- data/ext/nmatrix/ruby_nmatrix.c +45 -83
- data/ext/nmatrix/storage/common.h +9 -3
- data/ext/nmatrix/storage/dense/dense.cpp +4 -4
- data/ext/nmatrix/storage/list/list.cpp +2 -2
- data/ext/nmatrix/storage/yale/class.h +1 -1
- data/lib/nmatrix/blas.rb +103 -34
- data/lib/nmatrix/io/fortran_format.rb +8 -5
- data/lib/nmatrix/io/harwell_boeing.rb +11 -10
- data/lib/nmatrix/io/market.rb +9 -6
- data/lib/nmatrix/io/mat5_reader.rb +54 -29
- data/lib/nmatrix/io/mat_reader.rb +26 -14
- data/lib/nmatrix/io/point_cloud.rb +19 -11
- data/lib/nmatrix/math.rb +224 -5
- data/lib/nmatrix/mkmf.rb +103 -0
- data/lib/nmatrix/nmatrix.rb +20 -6
- data/lib/nmatrix/shortcuts.rb +415 -0
- data/lib/nmatrix/version.rb +1 -1
- data/spec/00_nmatrix_spec.rb +50 -1
- data/spec/02_slice_spec.rb +21 -21
- data/spec/blas_spec.rb +25 -3
- data/spec/math_spec.rb +233 -5
- data/spec/shortcuts_spec.rb +145 -5
- data/spec/spec_helper.rb +24 -1
- metadata +20 -4
data/spec/shortcuts_spec.rb
CHANGED
@@ -50,10 +50,45 @@ describe NMatrix do
|
|
50
50
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expect(m).to eq identity3
|
51
51
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end
|
52
52
|
|
53
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+
it "hilbert() creates an hilbert matrix" do
|
54
|
+
m = NMatrix.hilbert(8)
|
55
|
+
expect(m[4, 0]).to be_within(0.000001).of(0.2)
|
56
|
+
expect(m[4, 1]).to be_within(0.000001).of(0.16666666666666666)
|
57
|
+
expect(m[4, 2]).to be_within(0.000001).of(0.14285714285714285)
|
58
|
+
expect(m[4, 3]).to be_within(0.000001).of(0.125)
|
59
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+
|
60
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+
m = NMatrix.hilbert(3)
|
61
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+
hilbert3 = NMatrix.new([3, 3], [1.0, 0.5, 0.3333333333333333,\
|
62
|
+
0.5, 0.3333333333333333, 0.25, 0.3333333333333333, 0.25, 0.2])
|
63
|
+
expect(m).to eq hilbert3
|
64
|
+
0.upto(2) do |i|
|
65
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+
0.upto(2) do |j|
|
66
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+
expect(m[i, j]).to be_within(0.000001).of(hilbert3[i,j])
|
67
|
+
end
|
68
|
+
end
|
69
|
+
end
|
70
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+
|
71
|
+
it "inv_hilbert() creates an inverse hilbert matrix" do
|
72
|
+
m = NMatrix.inv_hilbert(6)
|
73
|
+
inv_hilbert6 = [3360.0, -88200.0, 564480.0, -1411200.0]
|
74
|
+
expect(m[2,0]).to be_within(0.000001).of(inv_hilbert6[0])
|
75
|
+
expect(m[2,1]).to be_within(0.000001).of(inv_hilbert6[1])
|
76
|
+
expect(m[2,2]).to be_within(0.000001).of(inv_hilbert6[2])
|
77
|
+
expect(m[2,3]).to be_within(0.000001).of(inv_hilbert6[3])
|
78
|
+
|
79
|
+
m = NMatrix.inv_hilbert(3)
|
80
|
+
inv_hilbert3 = NMatrix.new([3, 3], [ 9.0, -36.0, 30.0, -36.0, 192.0, -180.0, 30.0, -180.0, 180.0] )
|
81
|
+
0.upto(2) do |i|
|
82
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+
0.upto(2) do |j|
|
83
|
+
expect(m[i, j]).to be_within(0.000001).of(inv_hilbert3[i,j])
|
84
|
+
end
|
85
|
+
end
|
86
|
+
end
|
87
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+
|
53
88
|
it "diag() creates a matrix with pre-supplied diagonal" do
|
54
89
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arr = [1,2,3,4]
|
55
90
|
m = NMatrix.diag(arr)
|
56
|
-
expect(m.is_a?(NMatrix)).to
|
91
|
+
expect(m.is_a?(NMatrix)).to be true
|
57
92
|
end
|
58
93
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|
59
94
|
it "diagonals() contains the seeded values on the diagonal" do
|
@@ -123,6 +158,112 @@ describe NMatrix do
|
|
123
158
|
expect { NMatrix.random("not an array or integer") }.to raise_error
|
124
159
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end
|
125
160
|
end
|
161
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+
|
162
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+
context "::magic" do
|
163
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+
|
164
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+
ALL_DTYPES.each do |dtype|
|
165
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+
context dtype do
|
166
|
+
it "creates a matrix with numbers from 1 to n^n(n squared)" do
|
167
|
+
a = NMatrix.magic(3, dtype: dtype)
|
168
|
+
magic3 = NMatrix.new([3,3], [4, 9, 2, 3, 5, 7, 8, 1, 6], dtype: dtype)
|
169
|
+
expect(a).to eq magic3
|
170
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+
|
171
|
+
b = NMatrix.magic(4, dtype: dtype)
|
172
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+
magic4 = NMatrix.new([4,4], [1, 15, 14, 4, 12, 6, 7, 9, 8, 10, 11, 5, 13, 3, 2, 16], dtype: dtype)
|
173
|
+
expect(b).to eq magic4
|
174
|
+
|
175
|
+
c = NMatrix.magic(6, dtype: dtype)
|
176
|
+
magic6 = NMatrix.new([6,6], [31, 9, 2, 22, 27, 20, 3, 32, 7, 21, 23, 25, 35, 1, 6, 26, 19, 24, 4, 36, 29, 13, 18, 11, 30, 5, 34, 12, 14, 16, 8, 28, 33, 17, 10, 15], dtype: dtype)
|
177
|
+
expect(c).to eq magic6
|
178
|
+
end
|
179
|
+
end
|
180
|
+
end
|
181
|
+
|
182
|
+
it "shape of two is not allowed" do
|
183
|
+
expect { NMatrix.magic(2) }.to raise_error(ArgumentError)
|
184
|
+
end
|
185
|
+
|
186
|
+
it "Only accepts an integer as dimension" do
|
187
|
+
expect { NMatrix.magic(3.0) }.to raise_error(ArgumentError)
|
188
|
+
end
|
189
|
+
end
|
190
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+
|
191
|
+
context "::linspace" do
|
192
|
+
it "creates a row vector when given only one shape parameter" do
|
193
|
+
v = NMatrix.linspace(1, 10, 4)
|
194
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+
#Expect a row vector only
|
195
|
+
expect(v.shape.length).to eq(1)
|
196
|
+
|
197
|
+
ans = [1.0,4.0,7.0,10.0]
|
198
|
+
|
199
|
+
expect(v[0]).to be_within(0.000001).of(ans[0])
|
200
|
+
expect(v[1]).to be_within(0.000001).of(ans[1])
|
201
|
+
expect(v[2]).to be_within(0.000001).of(ans[2])
|
202
|
+
expect(v[3]).to be_within(0.000001).of(ans[3])
|
203
|
+
end
|
204
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+
|
205
|
+
it "creates a matrix of input shape with each entry linearly spaced in row major order" do
|
206
|
+
v = NMatrix.linspace(1, Math::PI, [2,2])
|
207
|
+
expect(v.dtype).to eq(:float64)
|
208
|
+
|
209
|
+
ans = [1.0, 1.7138642072677612, 2.4277284145355225, 3.1415927410125732]
|
210
|
+
|
211
|
+
expect(v[0,0]).to be_within(0.000001).of(ans[0])
|
212
|
+
expect(v[0,1]).to be_within(0.000001).of(ans[1])
|
213
|
+
expect(v[1,0]).to be_within(0.000001).of(ans[2])
|
214
|
+
expect(v[1,1]).to be_within(0.000001).of(ans[3])
|
215
|
+
end
|
216
|
+
end
|
217
|
+
|
218
|
+
context "::logspace" do
|
219
|
+
it "creates a logarithmically spaced vector" do
|
220
|
+
v = NMatrix.logspace(1, 2, 10)
|
221
|
+
|
222
|
+
expect(v.shape.length).to eq(1)
|
223
|
+
|
224
|
+
#Unit test taken from Matlab R2015b output of logspace(1,2,10)
|
225
|
+
ans = [10.0000, 12.9155, 16.6810, 21.5443, 27.8256, 35.9381, 46.4159, 59.9484, 77.4264, 100.0000]
|
226
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+
|
227
|
+
expect(v[0].round(4)).to be_within(0.000001).of(ans[0])
|
228
|
+
expect(v[1].round(4)).to be_within(0.000001).of(ans[1])
|
229
|
+
expect(v[2].round(4)).to be_within(0.000001).of(ans[2])
|
230
|
+
expect(v[3].round(4)).to be_within(0.000001).of(ans[3])
|
231
|
+
expect(v[4].round(4)).to be_within(0.000001).of(ans[4])
|
232
|
+
expect(v[5].round(4)).to be_within(0.000001).of(ans[5])
|
233
|
+
expect(v[6].round(4)).to be_within(0.000001).of(ans[6])
|
234
|
+
expect(v[7].round(4)).to be_within(0.000001).of(ans[7])
|
235
|
+
expect(v[8].round(4)).to be_within(0.000001).of(ans[8])
|
236
|
+
expect(v[9].round(4)).to be_within(0.000001).of(ans[9])
|
237
|
+
end
|
238
|
+
|
239
|
+
it "creates a logarithmically spaced vector bounded by Math::PI if :pi is pre-supplied" do
|
240
|
+
v = NMatrix.logspace(1, :pi, 7)
|
241
|
+
|
242
|
+
#Unit test taken from Matlab R2015b output of logspace(1,pi,10)
|
243
|
+
ans = [10.0000, 8.2450, 6.7980, 5.6050, 4.6213, 3.8103, 3.1416]
|
244
|
+
|
245
|
+
expect(v[0].round(4)).to be_within(0.000001).of(ans[0])
|
246
|
+
expect(v[1].round(4)).to be_within(0.000001).of(ans[1])
|
247
|
+
expect(v[2].round(4)).to be_within(0.000001).of(ans[2])
|
248
|
+
expect(v[3].round(4)).to be_within(0.000001).of(ans[3])
|
249
|
+
expect(v[4].round(4)).to be_within(0.000001).of(ans[4])
|
250
|
+
expect(v[5].round(4)).to be_within(0.000001).of(ans[5])
|
251
|
+
expect(v[6].round(4)).to be_within(0.000001).of(ans[6])
|
252
|
+
end
|
253
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+
|
254
|
+
it "creates a matrix of input shape with each entry logarithmically spaced in row major order" do
|
255
|
+
v = NMatrix.logspace(1, 2, [3,2])
|
256
|
+
|
257
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+
ans = [10.0, 15.8489, 25.1189, 39.8107, 63.0957, 100.0]
|
258
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+
|
259
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+
expect(v[0,0].round(4)).to be_within(0.000001).of(ans[0])
|
260
|
+
expect(v[0,1].round(4)).to be_within(0.000001).of(ans[1])
|
261
|
+
expect(v[1,0].round(4)).to be_within(0.000001).of(ans[2])
|
262
|
+
expect(v[1,1].round(4)).to be_within(0.000001).of(ans[3])
|
263
|
+
expect(v[2,0].round(4)).to be_within(0.000001).of(ans[4])
|
264
|
+
expect(v[2,1].round(4)).to be_within(0.000001).of(ans[5])
|
265
|
+
end
|
266
|
+
end
|
126
267
|
|
127
268
|
it "seq() creates a matrix of integers, sequentially" do
|
128
269
|
m = NMatrix.seq(2) # 2x2 matrix.
|
@@ -136,7 +277,6 @@ describe NMatrix do
|
|
136
277
|
end
|
137
278
|
end
|
138
279
|
|
139
|
-
|
140
280
|
it "indgen() creates a matrix of integers as well as seq()" do
|
141
281
|
m = NMatrix.indgen(2) # 2x2 matrix.
|
142
282
|
value = 0
|
@@ -189,19 +329,19 @@ describe NMatrix do
|
|
189
329
|
it "column() returns a NMatrix" do
|
190
330
|
m = NMatrix.random(3)
|
191
331
|
|
192
|
-
expect(m.column(2).is_a?(NMatrix)).to
|
332
|
+
expect(m.column(2).is_a?(NMatrix)).to be true
|
193
333
|
end
|
194
334
|
|
195
335
|
it "row() returns a NMatrix" do
|
196
336
|
m = NMatrix.random(3)
|
197
337
|
|
198
|
-
expect(m.row(2).is_a?(NMatrix)).to
|
338
|
+
expect(m.row(2).is_a?(NMatrix)).to be true
|
199
339
|
end
|
200
340
|
|
201
341
|
it "diagonals() creates an NMatrix" do
|
202
342
|
arr = [1,2,3,4]
|
203
343
|
m = NMatrix.diagonals(arr)
|
204
|
-
expect(m.is_a?(NMatrix)).to
|
344
|
+
expect(m.is_a?(NMatrix)).to be true
|
205
345
|
end
|
206
346
|
|
207
347
|
it "diagonals() contains the seeded values on the diagonal" do
|
data/spec/spec_helper.rb
CHANGED
@@ -32,7 +32,7 @@ require "./lib/nmatrix/rspec"
|
|
32
32
|
|
33
33
|
ALL_DTYPES = [:byte,:int8,:int16,:int32,:int64, :float32,:float64, :object,
|
34
34
|
:complex64, :complex128]
|
35
|
-
|
35
|
+
|
36
36
|
NON_INTEGER_DTYPES = [:float32, :float64, :complex64, :complex128,
|
37
37
|
:object]
|
38
38
|
|
@@ -48,6 +48,29 @@ COMPLEX_MATRIX32A_ARRAY = MATRIX32A_ARRAY.zip(MATRIX32A_ARRAY.reverse).collect {
|
|
48
48
|
GETRF_EXAMPLE_ARRAY = [-1,0,10,4,9,2,3,5,7,8,1,6]
|
49
49
|
GETRF_SOLUTION_ARRAY = [9.0, 2.0, 3.0, 5.0, 7.0/9, 58.0/9, -4.0/3, 19.0/9, -1.0/9, 1.0/29, 301.0/29, 130.0/29]
|
50
50
|
|
51
|
+
TAU_SOLUTION_ARRAY = [1.8571428571428572,1.9938461538461538, 0.0]
|
52
|
+
|
53
|
+
GEQRF_SOLUTION_ARRAY =[ -14.0, -21.0, 14.000000000000002,
|
54
|
+
0.23076923076923078, -175.00000000000003, 70.00000000000001,
|
55
|
+
-0.15384615384615385, 0.055555555555555546, -35.0]
|
56
|
+
|
57
|
+
R_SOLUTION_ARRAY = [-159.2388143638353, -41.00131005172065, -56.75123892439876, -90.75048729628048,
|
58
|
+
0.0, 25.137473501580676, 2.073591725046292, 9.790607357775713,
|
59
|
+
0.0, 0.0, -20.83259700334131, -17.592414929551445]
|
60
|
+
|
61
|
+
Q_SOLUTION_ARRAY_1 = [-0.632455532033676, -0.5209522876558295, -0.3984263084135902, -0.41214704991068,
|
62
|
+
-0.42783756578748666, -0.20837937347171134, 0.876505919951498, 0.07259770177184455,
|
63
|
+
-0.48364246567281094, 0.8265854747306287,-0.015758658987033422, -0.2873988222474053,
|
64
|
+
-0.42783756578748666, 0.044081783789183565, -0.26971376257215296, 0.8615487797670971]
|
65
|
+
|
66
|
+
Q_SOLUTION_ARRAY_2 = [-0.8571428571428572, 0.3942857142857143, 0.33142857142857146,
|
67
|
+
-0.4285714285714286, -0.9028571428571428, -0.03428571428571425,
|
68
|
+
0.28571428571428575, -0.1714285714285714, 0.9428571428571428]
|
69
|
+
|
70
|
+
Q_SOLUTION_ARRAY_3 = [-0.7724247413634004, -0.026670393594597247, -0.6345460653374136,
|
71
|
+
-0.5777485870360393, -0.38541856437557026, 0.7194853024298236,
|
72
|
+
-0.26375478973384403, 0.9223563413020934, 0.28229805268947933]
|
73
|
+
|
51
74
|
def create_matrix(stype) #:nodoc:
|
52
75
|
m = NMatrix.new([3,3], 0, dtype: :int32, stype: stype, default: 0)
|
53
76
|
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: nmatrix
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.2.
|
4
|
+
version: 0.2.3
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- John Woods
|
@@ -10,7 +10,7 @@ authors:
|
|
10
10
|
autorequire:
|
11
11
|
bindir: bin
|
12
12
|
cert_chain: []
|
13
|
-
date: 2016-
|
13
|
+
date: 2016-07-25 00:00:00.000000000 Z
|
14
14
|
dependencies:
|
15
15
|
- !ruby/object:Gem::Dependency
|
16
16
|
name: packable
|
@@ -46,6 +46,20 @@ dependencies:
|
|
46
46
|
- - "~>"
|
47
47
|
- !ruby/object:Gem::Version
|
48
48
|
version: '1.6'
|
49
|
+
- !ruby/object:Gem::Dependency
|
50
|
+
name: json
|
51
|
+
requirement: !ruby/object:Gem::Requirement
|
52
|
+
requirements:
|
53
|
+
- - "~>"
|
54
|
+
- !ruby/object:Gem::Version
|
55
|
+
version: 2.0.1
|
56
|
+
type: :development
|
57
|
+
prerelease: false
|
58
|
+
version_requirements: !ruby/object:Gem::Requirement
|
59
|
+
requirements:
|
60
|
+
- - "~>"
|
61
|
+
- !ruby/object:Gem::Version
|
62
|
+
version: 2.0.1
|
49
63
|
- !ruby/object:Gem::Dependency
|
50
64
|
name: pry
|
51
65
|
requirement: !ruby/object:Gem::Requirement
|
@@ -163,6 +177,7 @@ files:
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|
163
177
|
- ext/nmatrix/math/imax.h
|
164
178
|
- ext/nmatrix/math/laswp.h
|
165
179
|
- ext/nmatrix/math/long_dtype.h
|
180
|
+
- ext/nmatrix/math/magnitude.h
|
166
181
|
- ext/nmatrix/math/math.h
|
167
182
|
- ext/nmatrix/math/nrm2.h
|
168
183
|
- ext/nmatrix/math/rot.h
|
@@ -214,6 +229,7 @@ files:
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|
214
229
|
- lib/nmatrix/lapack_core.rb
|
215
230
|
- lib/nmatrix/lapack_plugin.rb
|
216
231
|
- lib/nmatrix/math.rb
|
232
|
+
- lib/nmatrix/mkmf.rb
|
217
233
|
- lib/nmatrix/monkeys.rb
|
218
234
|
- lib/nmatrix/nmatrix.rb
|
219
235
|
- lib/nmatrix/rspec.rb
|
@@ -249,7 +265,7 @@ files:
|
|
249
265
|
- spec/utm5940.mtx
|
250
266
|
homepage: http://sciruby.com
|
251
267
|
licenses:
|
252
|
-
- BSD
|
268
|
+
- BSD-3-Clause
|
253
269
|
metadata: {}
|
254
270
|
post_install_message: |
|
255
271
|
***********************************************************
|
@@ -289,7 +305,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
289
305
|
version: '0'
|
290
306
|
requirements: []
|
291
307
|
rubyforge_project:
|
292
|
-
rubygems_version: 2.
|
308
|
+
rubygems_version: 2.5.1
|
293
309
|
signing_key:
|
294
310
|
specification_version: 4
|
295
311
|
summary: NMatrix is a linear algebra library for Ruby
|