nmatrix 0.2.1 → 0.2.3

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Files changed (41) hide show
  1. checksums.yaml +4 -4
  2. data/ext/nmatrix/data/data.cpp +9 -9
  3. data/ext/nmatrix/data/data.h +7 -8
  4. data/ext/nmatrix/data/ruby_object.h +1 -4
  5. data/ext/nmatrix/extconf.rb +9 -127
  6. data/ext/nmatrix/math.cpp +25 -25
  7. data/ext/nmatrix/math/asum.h +10 -31
  8. data/ext/nmatrix/math/cblas_templates_core.h +10 -10
  9. data/ext/nmatrix/math/getrf.h +2 -2
  10. data/ext/nmatrix/math/imax.h +12 -9
  11. data/ext/nmatrix/math/laswp.h +3 -3
  12. data/ext/nmatrix/math/long_dtype.h +16 -3
  13. data/ext/nmatrix/math/magnitude.h +54 -0
  14. data/ext/nmatrix/math/nrm2.h +19 -14
  15. data/ext/nmatrix/math/trsm.h +40 -36
  16. data/ext/nmatrix/math/util.h +14 -0
  17. data/ext/nmatrix/nmatrix.h +39 -1
  18. data/ext/nmatrix/ruby_nmatrix.c +45 -83
  19. data/ext/nmatrix/storage/common.h +9 -3
  20. data/ext/nmatrix/storage/dense/dense.cpp +4 -4
  21. data/ext/nmatrix/storage/list/list.cpp +2 -2
  22. data/ext/nmatrix/storage/yale/class.h +1 -1
  23. data/lib/nmatrix/blas.rb +103 -34
  24. data/lib/nmatrix/io/fortran_format.rb +8 -5
  25. data/lib/nmatrix/io/harwell_boeing.rb +11 -10
  26. data/lib/nmatrix/io/market.rb +9 -6
  27. data/lib/nmatrix/io/mat5_reader.rb +54 -29
  28. data/lib/nmatrix/io/mat_reader.rb +26 -14
  29. data/lib/nmatrix/io/point_cloud.rb +19 -11
  30. data/lib/nmatrix/math.rb +224 -5
  31. data/lib/nmatrix/mkmf.rb +103 -0
  32. data/lib/nmatrix/nmatrix.rb +20 -6
  33. data/lib/nmatrix/shortcuts.rb +415 -0
  34. data/lib/nmatrix/version.rb +1 -1
  35. data/spec/00_nmatrix_spec.rb +50 -1
  36. data/spec/02_slice_spec.rb +21 -21
  37. data/spec/blas_spec.rb +25 -3
  38. data/spec/math_spec.rb +233 -5
  39. data/spec/shortcuts_spec.rb +145 -5
  40. data/spec/spec_helper.rb +24 -1
  41. metadata +20 -4
@@ -50,10 +50,45 @@ describe NMatrix do
50
50
  expect(m).to eq identity3
51
51
  end
52
52
 
53
+ it "hilbert() creates an hilbert matrix" do
54
+ m = NMatrix.hilbert(8)
55
+ expect(m[4, 0]).to be_within(0.000001).of(0.2)
56
+ expect(m[4, 1]).to be_within(0.000001).of(0.16666666666666666)
57
+ expect(m[4, 2]).to be_within(0.000001).of(0.14285714285714285)
58
+ expect(m[4, 3]).to be_within(0.000001).of(0.125)
59
+
60
+ m = NMatrix.hilbert(3)
61
+ hilbert3 = NMatrix.new([3, 3], [1.0, 0.5, 0.3333333333333333,\
62
+ 0.5, 0.3333333333333333, 0.25, 0.3333333333333333, 0.25, 0.2])
63
+ expect(m).to eq hilbert3
64
+ 0.upto(2) do |i|
65
+ 0.upto(2) do |j|
66
+ expect(m[i, j]).to be_within(0.000001).of(hilbert3[i,j])
67
+ end
68
+ end
69
+ end
70
+
71
+ it "inv_hilbert() creates an inverse hilbert matrix" do
72
+ m = NMatrix.inv_hilbert(6)
73
+ inv_hilbert6 = [3360.0, -88200.0, 564480.0, -1411200.0]
74
+ expect(m[2,0]).to be_within(0.000001).of(inv_hilbert6[0])
75
+ expect(m[2,1]).to be_within(0.000001).of(inv_hilbert6[1])
76
+ expect(m[2,2]).to be_within(0.000001).of(inv_hilbert6[2])
77
+ expect(m[2,3]).to be_within(0.000001).of(inv_hilbert6[3])
78
+
79
+ m = NMatrix.inv_hilbert(3)
80
+ inv_hilbert3 = NMatrix.new([3, 3], [ 9.0, -36.0, 30.0, -36.0, 192.0, -180.0, 30.0, -180.0, 180.0] )
81
+ 0.upto(2) do |i|
82
+ 0.upto(2) do |j|
83
+ expect(m[i, j]).to be_within(0.000001).of(inv_hilbert3[i,j])
84
+ end
85
+ end
86
+ end
87
+
53
88
  it "diag() creates a matrix with pre-supplied diagonal" do
54
89
  arr = [1,2,3,4]
55
90
  m = NMatrix.diag(arr)
56
- expect(m.is_a?(NMatrix)).to be_true
91
+ expect(m.is_a?(NMatrix)).to be true
57
92
  end
58
93
 
59
94
  it "diagonals() contains the seeded values on the diagonal" do
@@ -123,6 +158,112 @@ describe NMatrix do
123
158
  expect { NMatrix.random("not an array or integer") }.to raise_error
124
159
  end
125
160
  end
161
+
162
+ context "::magic" do
163
+
164
+ ALL_DTYPES.each do |dtype|
165
+ context dtype do
166
+ it "creates a matrix with numbers from 1 to n^n(n squared)" do
167
+ a = NMatrix.magic(3, dtype: dtype)
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+ magic3 = NMatrix.new([3,3], [4, 9, 2, 3, 5, 7, 8, 1, 6], dtype: dtype)
169
+ expect(a).to eq magic3
170
+
171
+ b = NMatrix.magic(4, dtype: dtype)
172
+ magic4 = NMatrix.new([4,4], [1, 15, 14, 4, 12, 6, 7, 9, 8, 10, 11, 5, 13, 3, 2, 16], dtype: dtype)
173
+ expect(b).to eq magic4
174
+
175
+ c = NMatrix.magic(6, dtype: dtype)
176
+ magic6 = NMatrix.new([6,6], [31, 9, 2, 22, 27, 20, 3, 32, 7, 21, 23, 25, 35, 1, 6, 26, 19, 24, 4, 36, 29, 13, 18, 11, 30, 5, 34, 12, 14, 16, 8, 28, 33, 17, 10, 15], dtype: dtype)
177
+ expect(c).to eq magic6
178
+ end
179
+ end
180
+ end
181
+
182
+ it "shape of two is not allowed" do
183
+ expect { NMatrix.magic(2) }.to raise_error(ArgumentError)
184
+ end
185
+
186
+ it "Only accepts an integer as dimension" do
187
+ expect { NMatrix.magic(3.0) }.to raise_error(ArgumentError)
188
+ end
189
+ end
190
+
191
+ context "::linspace" do
192
+ it "creates a row vector when given only one shape parameter" do
193
+ v = NMatrix.linspace(1, 10, 4)
194
+ #Expect a row vector only
195
+ expect(v.shape.length).to eq(1)
196
+
197
+ ans = [1.0,4.0,7.0,10.0]
198
+
199
+ expect(v[0]).to be_within(0.000001).of(ans[0])
200
+ expect(v[1]).to be_within(0.000001).of(ans[1])
201
+ expect(v[2]).to be_within(0.000001).of(ans[2])
202
+ expect(v[3]).to be_within(0.000001).of(ans[3])
203
+ end
204
+
205
+ it "creates a matrix of input shape with each entry linearly spaced in row major order" do
206
+ v = NMatrix.linspace(1, Math::PI, [2,2])
207
+ expect(v.dtype).to eq(:float64)
208
+
209
+ ans = [1.0, 1.7138642072677612, 2.4277284145355225, 3.1415927410125732]
210
+
211
+ expect(v[0,0]).to be_within(0.000001).of(ans[0])
212
+ expect(v[0,1]).to be_within(0.000001).of(ans[1])
213
+ expect(v[1,0]).to be_within(0.000001).of(ans[2])
214
+ expect(v[1,1]).to be_within(0.000001).of(ans[3])
215
+ end
216
+ end
217
+
218
+ context "::logspace" do
219
+ it "creates a logarithmically spaced vector" do
220
+ v = NMatrix.logspace(1, 2, 10)
221
+
222
+ expect(v.shape.length).to eq(1)
223
+
224
+ #Unit test taken from Matlab R2015b output of logspace(1,2,10)
225
+ ans = [10.0000, 12.9155, 16.6810, 21.5443, 27.8256, 35.9381, 46.4159, 59.9484, 77.4264, 100.0000]
226
+
227
+ expect(v[0].round(4)).to be_within(0.000001).of(ans[0])
228
+ expect(v[1].round(4)).to be_within(0.000001).of(ans[1])
229
+ expect(v[2].round(4)).to be_within(0.000001).of(ans[2])
230
+ expect(v[3].round(4)).to be_within(0.000001).of(ans[3])
231
+ expect(v[4].round(4)).to be_within(0.000001).of(ans[4])
232
+ expect(v[5].round(4)).to be_within(0.000001).of(ans[5])
233
+ expect(v[6].round(4)).to be_within(0.000001).of(ans[6])
234
+ expect(v[7].round(4)).to be_within(0.000001).of(ans[7])
235
+ expect(v[8].round(4)).to be_within(0.000001).of(ans[8])
236
+ expect(v[9].round(4)).to be_within(0.000001).of(ans[9])
237
+ end
238
+
239
+ it "creates a logarithmically spaced vector bounded by Math::PI if :pi is pre-supplied" do
240
+ v = NMatrix.logspace(1, :pi, 7)
241
+
242
+ #Unit test taken from Matlab R2015b output of logspace(1,pi,10)
243
+ ans = [10.0000, 8.2450, 6.7980, 5.6050, 4.6213, 3.8103, 3.1416]
244
+
245
+ expect(v[0].round(4)).to be_within(0.000001).of(ans[0])
246
+ expect(v[1].round(4)).to be_within(0.000001).of(ans[1])
247
+ expect(v[2].round(4)).to be_within(0.000001).of(ans[2])
248
+ expect(v[3].round(4)).to be_within(0.000001).of(ans[3])
249
+ expect(v[4].round(4)).to be_within(0.000001).of(ans[4])
250
+ expect(v[5].round(4)).to be_within(0.000001).of(ans[5])
251
+ expect(v[6].round(4)).to be_within(0.000001).of(ans[6])
252
+ end
253
+
254
+ it "creates a matrix of input shape with each entry logarithmically spaced in row major order" do
255
+ v = NMatrix.logspace(1, 2, [3,2])
256
+
257
+ ans = [10.0, 15.8489, 25.1189, 39.8107, 63.0957, 100.0]
258
+
259
+ expect(v[0,0].round(4)).to be_within(0.000001).of(ans[0])
260
+ expect(v[0,1].round(4)).to be_within(0.000001).of(ans[1])
261
+ expect(v[1,0].round(4)).to be_within(0.000001).of(ans[2])
262
+ expect(v[1,1].round(4)).to be_within(0.000001).of(ans[3])
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+ expect(v[2,0].round(4)).to be_within(0.000001).of(ans[4])
264
+ expect(v[2,1].round(4)).to be_within(0.000001).of(ans[5])
265
+ end
266
+ end
126
267
 
127
268
  it "seq() creates a matrix of integers, sequentially" do
128
269
  m = NMatrix.seq(2) # 2x2 matrix.
@@ -136,7 +277,6 @@ describe NMatrix do
136
277
  end
137
278
  end
138
279
 
139
-
140
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  it "indgen() creates a matrix of integers as well as seq()" do
141
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  m = NMatrix.indgen(2) # 2x2 matrix.
142
282
  value = 0
@@ -189,19 +329,19 @@ describe NMatrix do
189
329
  it "column() returns a NMatrix" do
190
330
  m = NMatrix.random(3)
191
331
 
192
- expect(m.column(2).is_a?(NMatrix)).to be_true
332
+ expect(m.column(2).is_a?(NMatrix)).to be true
193
333
  end
194
334
 
195
335
  it "row() returns a NMatrix" do
196
336
  m = NMatrix.random(3)
197
337
 
198
- expect(m.row(2).is_a?(NMatrix)).to be_true
338
+ expect(m.row(2).is_a?(NMatrix)).to be true
199
339
  end
200
340
 
201
341
  it "diagonals() creates an NMatrix" do
202
342
  arr = [1,2,3,4]
203
343
  m = NMatrix.diagonals(arr)
204
- expect(m.is_a?(NMatrix)).to be_true
344
+ expect(m.is_a?(NMatrix)).to be true
205
345
  end
206
346
 
207
347
  it "diagonals() contains the seeded values on the diagonal" do
@@ -32,7 +32,7 @@ require "./lib/nmatrix/rspec"
32
32
 
33
33
  ALL_DTYPES = [:byte,:int8,:int16,:int32,:int64, :float32,:float64, :object,
34
34
  :complex64, :complex128]
35
-
35
+
36
36
  NON_INTEGER_DTYPES = [:float32, :float64, :complex64, :complex128,
37
37
  :object]
38
38
 
@@ -48,6 +48,29 @@ COMPLEX_MATRIX32A_ARRAY = MATRIX32A_ARRAY.zip(MATRIX32A_ARRAY.reverse).collect {
48
48
  GETRF_EXAMPLE_ARRAY = [-1,0,10,4,9,2,3,5,7,8,1,6]
49
49
  GETRF_SOLUTION_ARRAY = [9.0, 2.0, 3.0, 5.0, 7.0/9, 58.0/9, -4.0/3, 19.0/9, -1.0/9, 1.0/29, 301.0/29, 130.0/29]
50
50
 
51
+ TAU_SOLUTION_ARRAY = [1.8571428571428572,1.9938461538461538, 0.0]
52
+
53
+ GEQRF_SOLUTION_ARRAY =[ -14.0, -21.0, 14.000000000000002,
54
+ 0.23076923076923078, -175.00000000000003, 70.00000000000001,
55
+ -0.15384615384615385, 0.055555555555555546, -35.0]
56
+
57
+ R_SOLUTION_ARRAY = [-159.2388143638353, -41.00131005172065, -56.75123892439876, -90.75048729628048,
58
+ 0.0, 25.137473501580676, 2.073591725046292, 9.790607357775713,
59
+ 0.0, 0.0, -20.83259700334131, -17.592414929551445]
60
+
61
+ Q_SOLUTION_ARRAY_1 = [-0.632455532033676, -0.5209522876558295, -0.3984263084135902, -0.41214704991068,
62
+ -0.42783756578748666, -0.20837937347171134, 0.876505919951498, 0.07259770177184455,
63
+ -0.48364246567281094, 0.8265854747306287,-0.015758658987033422, -0.2873988222474053,
64
+ -0.42783756578748666, 0.044081783789183565, -0.26971376257215296, 0.8615487797670971]
65
+
66
+ Q_SOLUTION_ARRAY_2 = [-0.8571428571428572, 0.3942857142857143, 0.33142857142857146,
67
+ -0.4285714285714286, -0.9028571428571428, -0.03428571428571425,
68
+ 0.28571428571428575, -0.1714285714285714, 0.9428571428571428]
69
+
70
+ Q_SOLUTION_ARRAY_3 = [-0.7724247413634004, -0.026670393594597247, -0.6345460653374136,
71
+ -0.5777485870360393, -0.38541856437557026, 0.7194853024298236,
72
+ -0.26375478973384403, 0.9223563413020934, 0.28229805268947933]
73
+
51
74
  def create_matrix(stype) #:nodoc:
52
75
  m = NMatrix.new([3,3], 0, dtype: :int32, stype: stype, default: 0)
53
76
 
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: nmatrix
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.2.1
4
+ version: 0.2.3
5
5
  platform: ruby
6
6
  authors:
7
7
  - John Woods
@@ -10,7 +10,7 @@ authors:
10
10
  autorequire:
11
11
  bindir: bin
12
12
  cert_chain: []
13
- date: 2016-01-18 00:00:00.000000000 Z
13
+ date: 2016-07-25 00:00:00.000000000 Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: packable
@@ -46,6 +46,20 @@ dependencies:
46
46
  - - "~>"
47
47
  - !ruby/object:Gem::Version
48
48
  version: '1.6'
49
+ - !ruby/object:Gem::Dependency
50
+ name: json
51
+ requirement: !ruby/object:Gem::Requirement
52
+ requirements:
53
+ - - "~>"
54
+ - !ruby/object:Gem::Version
55
+ version: 2.0.1
56
+ type: :development
57
+ prerelease: false
58
+ version_requirements: !ruby/object:Gem::Requirement
59
+ requirements:
60
+ - - "~>"
61
+ - !ruby/object:Gem::Version
62
+ version: 2.0.1
49
63
  - !ruby/object:Gem::Dependency
50
64
  name: pry
51
65
  requirement: !ruby/object:Gem::Requirement
@@ -163,6 +177,7 @@ files:
163
177
  - ext/nmatrix/math/imax.h
164
178
  - ext/nmatrix/math/laswp.h
165
179
  - ext/nmatrix/math/long_dtype.h
180
+ - ext/nmatrix/math/magnitude.h
166
181
  - ext/nmatrix/math/math.h
167
182
  - ext/nmatrix/math/nrm2.h
168
183
  - ext/nmatrix/math/rot.h
@@ -214,6 +229,7 @@ files:
214
229
  - lib/nmatrix/lapack_core.rb
215
230
  - lib/nmatrix/lapack_plugin.rb
216
231
  - lib/nmatrix/math.rb
232
+ - lib/nmatrix/mkmf.rb
217
233
  - lib/nmatrix/monkeys.rb
218
234
  - lib/nmatrix/nmatrix.rb
219
235
  - lib/nmatrix/rspec.rb
@@ -249,7 +265,7 @@ files:
249
265
  - spec/utm5940.mtx
250
266
  homepage: http://sciruby.com
251
267
  licenses:
252
- - BSD 3-clause
268
+ - BSD-3-Clause
253
269
  metadata: {}
254
270
  post_install_message: |
255
271
  ***********************************************************
@@ -289,7 +305,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
289
305
  version: '0'
290
306
  requirements: []
291
307
  rubyforge_project:
292
- rubygems_version: 2.4.5
308
+ rubygems_version: 2.5.1
293
309
  signing_key:
294
310
  specification_version: 4
295
311
  summary: NMatrix is a linear algebra library for Ruby