nmatrix 0.0.9 → 0.1.0.rc1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile +1 -0
- data/History.txt +95 -1
- data/LICENSE.txt +2 -2
- data/README.rdoc +24 -26
- data/Rakefile +32 -16
- data/ext/nmatrix/data/complex.h +2 -2
- data/ext/nmatrix/data/data.cpp +27 -51
- data/ext/nmatrix/data/data.h +92 -4
- data/ext/nmatrix/data/meta.h +2 -2
- data/ext/nmatrix/data/rational.h +2 -2
- data/ext/nmatrix/data/ruby_object.h +2 -2
- data/ext/nmatrix/extconf.rb +87 -86
- data/ext/nmatrix/math.cpp +45 -40
- data/ext/nmatrix/math/asum.h +3 -3
- data/ext/nmatrix/math/geev.h +2 -2
- data/ext/nmatrix/math/gemm.h +6 -2
- data/ext/nmatrix/math/gemv.h +6 -2
- data/ext/nmatrix/math/ger.h +2 -2
- data/ext/nmatrix/math/gesdd.h +2 -2
- data/ext/nmatrix/math/gesvd.h +2 -2
- data/ext/nmatrix/math/getf2.h +2 -2
- data/ext/nmatrix/math/getrf.h +2 -2
- data/ext/nmatrix/math/getri.h +2 -2
- data/ext/nmatrix/math/getrs.h +7 -3
- data/ext/nmatrix/math/idamax.h +2 -2
- data/ext/nmatrix/math/inc.h +12 -6
- data/ext/nmatrix/math/laswp.h +2 -2
- data/ext/nmatrix/math/long_dtype.h +2 -2
- data/ext/nmatrix/math/math.h +16 -10
- data/ext/nmatrix/math/nrm2.h +3 -3
- data/ext/nmatrix/math/potrs.h +7 -3
- data/ext/nmatrix/math/rot.h +2 -2
- data/ext/nmatrix/math/rotg.h +2 -2
- data/ext/nmatrix/math/scal.h +2 -2
- data/ext/nmatrix/math/swap.h +2 -2
- data/ext/nmatrix/math/trsm.h +7 -3
- data/ext/nmatrix/nm_memory.h +60 -0
- data/ext/nmatrix/nmatrix.cpp +13 -47
- data/ext/nmatrix/nmatrix.h +37 -12
- data/ext/nmatrix/ruby_constants.cpp +4 -2
- data/ext/nmatrix/ruby_constants.h +4 -2
- data/ext/nmatrix/ruby_nmatrix.c +937 -170
- data/ext/nmatrix/storage/common.cpp +2 -2
- data/ext/nmatrix/storage/common.h +2 -2
- data/ext/nmatrix/storage/{dense.cpp → dense/dense.cpp} +253 -100
- data/ext/nmatrix/storage/{dense.h → dense/dense.h} +6 -5
- data/ext/nmatrix/storage/{list.cpp → list/list.cpp} +517 -98
- data/ext/nmatrix/storage/{list.h → list/list.h} +13 -6
- data/ext/nmatrix/storage/storage.cpp +48 -19
- data/ext/nmatrix/storage/storage.h +4 -4
- data/ext/nmatrix/storage/yale/class.h +112 -43
- data/ext/nmatrix/storage/yale/iterators/base.h +2 -2
- data/ext/nmatrix/storage/yale/iterators/iterator.h +2 -2
- data/ext/nmatrix/storage/yale/iterators/row.h +2 -2
- data/ext/nmatrix/storage/yale/iterators/row_stored.h +2 -2
- data/ext/nmatrix/storage/yale/iterators/row_stored_nd.h +4 -3
- data/ext/nmatrix/storage/yale/iterators/stored_diagonal.h +2 -2
- data/ext/nmatrix/storage/yale/math/transpose.h +2 -2
- data/ext/nmatrix/storage/yale/yale.cpp +343 -52
- data/ext/nmatrix/storage/yale/yale.h +7 -3
- data/ext/nmatrix/types.h +2 -2
- data/ext/nmatrix/util/io.cpp +5 -5
- data/ext/nmatrix/util/io.h +2 -2
- data/ext/nmatrix/util/sl_list.cpp +40 -27
- data/ext/nmatrix/util/sl_list.h +3 -3
- data/ext/nmatrix/util/util.h +2 -2
- data/lib/nmatrix.rb +2 -2
- data/lib/nmatrix/blas.rb +2 -2
- data/lib/nmatrix/enumerate.rb +17 -6
- data/lib/nmatrix/io/market.rb +2 -3
- data/lib/nmatrix/io/mat5_reader.rb +2 -2
- data/lib/nmatrix/io/mat_reader.rb +2 -2
- data/lib/nmatrix/lapack.rb +46 -46
- data/lib/nmatrix/math.rb +213 -20
- data/lib/nmatrix/monkeys.rb +24 -2
- data/lib/nmatrix/nmatrix.rb +394 -9
- data/lib/nmatrix/nvector.rb +2 -64
- data/lib/nmatrix/rspec.rb +2 -2
- data/lib/nmatrix/shortcuts.rb +14 -61
- data/lib/nmatrix/version.rb +11 -3
- data/lib/nmatrix/yale_functions.rb +4 -4
- data/nmatrix.gemspec +2 -7
- data/scripts/mac-brew-gcc.sh +11 -8
- data/scripts/mac-mavericks-brew-gcc.sh +22 -0
- data/spec/00_nmatrix_spec.rb +116 -7
- data/spec/01_enum_spec.rb +17 -3
- data/spec/02_slice_spec.rb +11 -3
- data/spec/blas_spec.rb +5 -2
- data/spec/elementwise_spec.rb +5 -2
- data/spec/io_spec.rb +27 -17
- data/spec/lapack_spec.rb +157 -9
- data/spec/math_spec.rb +95 -4
- data/spec/nmatrix_yale_spec.rb +21 -26
- data/spec/rspec_monkeys.rb +27 -0
- data/spec/rspec_spec.rb +2 -2
- data/spec/shortcuts_spec.rb +5 -10
- data/spec/slice_set_spec.rb +6 -2
- data/spec/spec_helper.rb +3 -2
- data/spec/stat_spec.rb +174 -158
- metadata +15 -15
data/ext/nmatrix/math/asum.h
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// == Copyright Information
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//
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// SciRuby is Copyright (c) 2010 -
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// NMatrix is Copyright (c)
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// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
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// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
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// Please see LICENSE.txt for additional copyright notices.
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//
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template <>
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inline float asum(const int N, const float* X, const int incX) {
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return cblas_sasum(N, X, incX);
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data/ext/nmatrix/math/geev.h
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// Please see LICENSE.txt for additional copyright notices.
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//
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data/ext/nmatrix/math/gemm.h
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// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
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# define GEMM_H
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extern "C" { // These need to be in an extern "C" block or you'll get all kinds of undefined symbol errors.
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#if defined HAVE_CBLAS_H
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#include <atlas/cblas.h>
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#endif
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}
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# define GEMV_H
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#endif
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}
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rb_raise(rb_eNotImpError, "only CLAPACK version implemented thus far");
|
538
544
|
#endif
|
539
545
|
return 0;
|
540
546
|
}
|
541
547
|
|
542
|
-
#
|
548
|
+
#if defined HAVE_CLAPACK_H || defined HAVE_ATLAS_CLAPACK_H
|
543
549
|
template <>
|
544
550
|
inline int potrf(const enum CBLAS_ORDER order, const enum CBLAS_UPLO uplo, const int N, float* A, const int lda) {
|
545
551
|
return clapack_spotrf(order, uplo, N, A, lda);
|
@@ -928,7 +934,7 @@ inline void lauum(const enum CBLAS_ORDER order, const enum CBLAS_UPLO uplo, cons
|
|
928
934
|
}
|
929
935
|
|
930
936
|
|
931
|
-
#
|
937
|
+
#if defined HAVE_CLAPACK_H || defined HAVE_ATLAS_CLAPACK_H
|
932
938
|
template <bool is_complex>
|
933
939
|
inline void lauum(const enum CBLAS_ORDER order, const enum CBLAS_UPLO uplo, const int N, float* A, const int lda) {
|
934
940
|
clapack_slauum(order, uplo, N, A, lda);
|
@@ -1019,7 +1025,7 @@ inline int potri(const enum CBLAS_ORDER order, const enum CBLAS_UPLO uplo, const
|
|
1019
1025
|
}
|
1020
1026
|
|
1021
1027
|
|
1022
|
-
#
|
1028
|
+
#if defined HAVE_CLAPACK_H || defined HAVE_ATLAS_CLAPACK_H
|
1023
1029
|
template <>
|
1024
1030
|
inline int potri(const enum CBLAS_ORDER order, const enum CBLAS_UPLO uplo, const int n, float* a, const int lda) {
|
1025
1031
|
return clapack_spotri(order, uplo, n, a, lda);
|
data/ext/nmatrix/math/nrm2.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
@@ -98,7 +98,7 @@ ReturnDType nrm2(const int N, const DType* X, const int incX) {
|
|
98
98
|
}
|
99
99
|
|
100
100
|
|
101
|
-
#
|
101
|
+
#if defined HAVE_CBLAS_H || defined HAVE_ATLAS_CBLAS_H
|
102
102
|
template <>
|
103
103
|
inline float nrm2(const int N, const float* X, const int incX) {
|
104
104
|
return cblas_snrm2(N, X, incX);
|
data/ext/nmatrix/math/potrs.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
@@ -60,7 +60,11 @@
|
|
60
60
|
#define POTRS_H
|
61
61
|
|
62
62
|
extern "C" {
|
63
|
+
#if defined HAVE_CBLAS_H
|
63
64
|
#include <cblas.h>
|
65
|
+
#elif defined HAVE_ATLAS_CBLAS_H
|
66
|
+
#include <atlas/cblas.h>
|
67
|
+
#endif
|
64
68
|
}
|
65
69
|
|
66
70
|
namespace nm { namespace math {
|
@@ -122,4 +126,4 @@ inline int clapack_potrs(const enum CBLAS_ORDER order, const enum CBLAS_UPLO upl
|
|
122
126
|
|
123
127
|
} } // end nm::math
|
124
128
|
|
125
|
-
#endif // POTRS_H
|
129
|
+
#endif // POTRS_H
|
data/ext/nmatrix/math/rot.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
data/ext/nmatrix/math/rotg.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
data/ext/nmatrix/math/scal.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
data/ext/nmatrix/math/swap.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
data/ext/nmatrix/math/trsm.h
CHANGED
@@ -9,8 +9,8 @@
|
|
9
9
|
//
|
10
10
|
// == Copyright Information
|
11
11
|
//
|
12
|
-
// SciRuby is Copyright (c) 2010 -
|
13
|
-
// NMatrix is Copyright (c)
|
12
|
+
// SciRuby is Copyright (c) 2010 - 2014, Ruby Science Foundation
|
13
|
+
// NMatrix is Copyright (c) 2012 - 2014, John Woods and the Ruby Science Foundation
|
14
14
|
//
|
15
15
|
// Please see LICENSE.txt for additional copyright notices.
|
16
16
|
//
|
@@ -60,7 +60,11 @@
|
|
60
60
|
|
61
61
|
|
62
62
|
extern "C" {
|
63
|
+
#if defined HAVE_CBLAS_H
|
63
64
|
#include <cblas.h>
|
65
|
+
#elif defined HAVE_ATLAS_CBLAS_H
|
66
|
+
#include <atlas/cblas.h>
|
67
|
+
#endif
|
64
68
|
}
|
65
69
|
|
66
70
|
namespace nm { namespace math {
|
@@ -380,4 +384,4 @@ inline void trsm(const enum CBLAS_ORDER order, const enum CBLAS_SIDE side, const
|
|
380
384
|
|
381
385
|
|
382
386
|
} } // namespace nm::math
|
383
|
-
#endif // TRSM_H
|
387
|
+
#endif // TRSM_H
|