nmatrix 0.0.1 → 0.0.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. data/.gitignore +27 -0
  2. data/.rspec +2 -0
  3. data/Gemfile +3 -5
  4. data/Guardfile +6 -0
  5. data/History.txt +33 -0
  6. data/Manifest.txt +41 -38
  7. data/README.rdoc +88 -11
  8. data/Rakefile +35 -53
  9. data/ext/nmatrix/data/complex.h +372 -0
  10. data/ext/nmatrix/data/data.cpp +275 -0
  11. data/ext/nmatrix/data/data.h +707 -0
  12. data/ext/nmatrix/data/rational.h +421 -0
  13. data/ext/nmatrix/data/ruby_object.h +446 -0
  14. data/ext/nmatrix/extconf.rb +101 -51
  15. data/ext/nmatrix/new_extconf.rb +56 -0
  16. data/ext/nmatrix/nmatrix.cpp +1609 -0
  17. data/ext/nmatrix/nmatrix.h +265 -849
  18. data/ext/nmatrix/ruby_constants.cpp +134 -0
  19. data/ext/nmatrix/ruby_constants.h +103 -0
  20. data/ext/nmatrix/storage/common.cpp +70 -0
  21. data/ext/nmatrix/storage/common.h +170 -0
  22. data/ext/nmatrix/storage/dense.cpp +665 -0
  23. data/ext/nmatrix/storage/dense.h +116 -0
  24. data/ext/nmatrix/storage/list.cpp +1088 -0
  25. data/ext/nmatrix/storage/list.h +129 -0
  26. data/ext/nmatrix/storage/storage.cpp +658 -0
  27. data/ext/nmatrix/storage/storage.h +99 -0
  28. data/ext/nmatrix/storage/yale.cpp +1601 -0
  29. data/ext/nmatrix/storage/yale.h +208 -0
  30. data/ext/nmatrix/ttable_helper.rb +126 -0
  31. data/ext/nmatrix/{yale/smmp1_header.template.c → types.h} +36 -9
  32. data/ext/nmatrix/util/io.cpp +295 -0
  33. data/ext/nmatrix/util/io.h +117 -0
  34. data/ext/nmatrix/util/lapack.h +1175 -0
  35. data/ext/nmatrix/util/math.cpp +557 -0
  36. data/ext/nmatrix/util/math.h +1363 -0
  37. data/ext/nmatrix/util/sl_list.cpp +475 -0
  38. data/ext/nmatrix/util/sl_list.h +255 -0
  39. data/ext/nmatrix/util/util.h +78 -0
  40. data/lib/nmatrix/blas.rb +70 -0
  41. data/lib/nmatrix/io/mat5_reader.rb +567 -0
  42. data/lib/nmatrix/io/mat_reader.rb +162 -0
  43. data/lib/{string.rb → nmatrix/monkeys.rb} +49 -2
  44. data/lib/nmatrix/nmatrix.rb +199 -0
  45. data/lib/nmatrix/nvector.rb +103 -0
  46. data/lib/nmatrix/version.rb +27 -0
  47. data/lib/nmatrix.rb +22 -230
  48. data/nmatrix.gemspec +59 -0
  49. data/scripts/mac-brew-gcc.sh +47 -0
  50. data/spec/4x4_sparse.mat +0 -0
  51. data/spec/4x5_dense.mat +0 -0
  52. data/spec/blas_spec.rb +47 -0
  53. data/spec/elementwise_spec.rb +164 -0
  54. data/spec/io_spec.rb +60 -0
  55. data/spec/lapack_spec.rb +52 -0
  56. data/spec/math_spec.rb +96 -0
  57. data/spec/nmatrix_spec.rb +93 -89
  58. data/spec/nmatrix_yale_spec.rb +52 -36
  59. data/spec/nvector_spec.rb +1 -1
  60. data/spec/slice_spec.rb +257 -0
  61. data/spec/spec_helper.rb +51 -0
  62. data/spec/utm5940.mtx +83844 -0
  63. metadata +113 -71
  64. data/.autotest +0 -23
  65. data/.gemtest +0 -0
  66. data/ext/nmatrix/cblas.c +0 -150
  67. data/ext/nmatrix/dense/blas_header.template.c +0 -52
  68. data/ext/nmatrix/dense/elementwise.template.c +0 -107
  69. data/ext/nmatrix/dense/gemm.template.c +0 -159
  70. data/ext/nmatrix/dense/gemv.template.c +0 -130
  71. data/ext/nmatrix/dense/rationalmath.template.c +0 -68
  72. data/ext/nmatrix/dense.c +0 -307
  73. data/ext/nmatrix/depend +0 -18
  74. data/ext/nmatrix/generator/syntax_tree.rb +0 -481
  75. data/ext/nmatrix/generator.rb +0 -594
  76. data/ext/nmatrix/list.c +0 -774
  77. data/ext/nmatrix/nmatrix.c +0 -1977
  78. data/ext/nmatrix/rational.c +0 -98
  79. data/ext/nmatrix/yale/complexmath.template.c +0 -71
  80. data/ext/nmatrix/yale/elementwise.template.c +0 -46
  81. data/ext/nmatrix/yale/elementwise_op.template.c +0 -73
  82. data/ext/nmatrix/yale/numbmm.template.c +0 -94
  83. data/ext/nmatrix/yale/smmp1.template.c +0 -21
  84. data/ext/nmatrix/yale/smmp2.template.c +0 -43
  85. data/ext/nmatrix/yale/smmp2_header.template.c +0 -46
  86. data/ext/nmatrix/yale/sort_columns.template.c +0 -56
  87. data/ext/nmatrix/yale/symbmm.template.c +0 -54
  88. data/ext/nmatrix/yale/transp.template.c +0 -68
  89. data/ext/nmatrix/yale.c +0 -726
  90. data/lib/array.rb +0 -67
  91. data/spec/syntax_tree_spec.rb +0 -46
@@ -0,0 +1,116 @@
1
+ /////////////////////////////////////////////////////////////////////
2
+ // = NMatrix
3
+ //
4
+ // A linear algebra library for scientific computation in Ruby.
5
+ // NMatrix is part of SciRuby.
6
+ //
7
+ // NMatrix was originally inspired by and derived from NArray, by
8
+ // Masahiro Tanaka: http://narray.rubyforge.org
9
+ //
10
+ // == Copyright Information
11
+ //
12
+ // SciRuby is Copyright (c) 2010 - 2012, Ruby Science Foundation
13
+ // NMatrix is Copyright (c) 2012, Ruby Science Foundation
14
+ //
15
+ // Please see LICENSE.txt for additional copyright notices.
16
+ //
17
+ // == Contributing
18
+ //
19
+ // By contributing source code to SciRuby, you agree to be bound by
20
+ // our Contributor Agreement:
21
+ //
22
+ // * https://github.com/SciRuby/sciruby/wiki/Contributor-Agreement
23
+ //
24
+ // == dense.h
25
+ //
26
+ // Dense n-dimensional matrix storage.
27
+
28
+ #ifndef DENSE_H
29
+ #define DENSE_H
30
+
31
+ /*
32
+ * Standard Includes
33
+ */
34
+
35
+ #include <stdlib.h>
36
+
37
+ /*
38
+ * Project Includes
39
+ */
40
+
41
+ #include "types.h"
42
+ //#include "util/math.h"
43
+
44
+ #include "data/data.h"
45
+
46
+ #include "common.h"
47
+
48
+ #include "nmatrix.h"
49
+
50
+ /*
51
+ * Macros
52
+ */
53
+
54
+ /*
55
+ * Types
56
+ */
57
+
58
+ /*
59
+ * Data
60
+ */
61
+
62
+ extern "C" {
63
+
64
+ /*
65
+ * Functions
66
+ */
67
+
68
+ ///////////////
69
+ // Lifecycle //
70
+ ///////////////
71
+
72
+ DENSE_STORAGE* nm_dense_storage_create(dtype_t dtype, size_t* shape, size_t dim, void* elements, size_t elements_length);
73
+ void nm_dense_storage_delete(STORAGE* s);
74
+ void nm_dense_storage_delete_ref(STORAGE* s);
75
+ void nm_dense_storage_mark(void*);
76
+
77
+ ///////////////
78
+ // Accessors //
79
+ ///////////////
80
+
81
+ void* nm_dense_storage_get(STORAGE* s, SLICE* slice);
82
+ void* nm_dense_storage_ref(STORAGE* s, SLICE* slice);
83
+ void nm_dense_storage_set(STORAGE* s, SLICE* slice, void* val);
84
+
85
+ ///////////
86
+ // Tests //
87
+ ///////////
88
+
89
+ bool nm_dense_storage_eqeq(const STORAGE* left, const STORAGE* right);
90
+ bool nm_dense_storage_is_symmetric(const DENSE_STORAGE* mat, int lda);
91
+ bool nm_dense_storage_is_hermitian(const DENSE_STORAGE* mat, int lda);
92
+
93
+ //////////
94
+ // Math //
95
+ //////////
96
+
97
+ STORAGE* nm_dense_storage_ew_op(nm::ewop_t op, const STORAGE* left, const STORAGE* right);
98
+ STORAGE* nm_dense_storage_matrix_multiply(const STORAGE_PAIR& casted_storage, size_t* resulting_shape, bool vector);
99
+
100
+ /////////////
101
+ // Utility //
102
+ /////////////
103
+
104
+ size_t nm_dense_storage_pos(const DENSE_STORAGE* s, const size_t* coords);
105
+
106
+ /////////////////////////
107
+ // Copying and Casting //
108
+ /////////////////////////
109
+
110
+ DENSE_STORAGE* nm_dense_storage_copy(const DENSE_STORAGE* rhs);
111
+ STORAGE* nm_dense_storage_copy_transposed(const STORAGE* rhs_base);
112
+ STORAGE* nm_dense_storage_cast_copy(const STORAGE* rhs, dtype_t new_dtype);
113
+
114
+ } // end of extern "C" block
115
+
116
+ #endif // DENSE_H