nmatrix-atlas 0.2.0 → 0.2.1
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- checksums.yaml +4 -4
- data/ext/nmatrix/data/complex.h +183 -159
- data/ext/nmatrix/data/data.h +306 -292
- data/ext/nmatrix/data/ruby_object.h +193 -193
- data/ext/nmatrix/math/math.h +3 -2
- data/ext/nmatrix/math/trsm.h +152 -152
- data/ext/nmatrix/nmatrix.h +30 -0
- data/ext/nmatrix/ruby_constants.h +35 -35
- data/ext/nmatrix/storage/common.h +4 -3
- data/ext/nmatrix/storage/dense/dense.h +8 -7
- data/ext/nmatrix/storage/list/list.h +7 -6
- data/ext/nmatrix/storage/storage.h +12 -11
- data/ext/nmatrix/storage/yale/class.h +2 -2
- data/ext/nmatrix/storage/yale/iterators/base.h +2 -1
- data/ext/nmatrix/storage/yale/iterators/iterator.h +2 -1
- data/ext/nmatrix/storage/yale/iterators/row.h +2 -1
- data/ext/nmatrix/storage/yale/iterators/row_stored.h +2 -1
- data/ext/nmatrix/storage/yale/iterators/row_stored_nd.h +1 -0
- data/ext/nmatrix/storage/yale/iterators/stored_diagonal.h +2 -1
- data/ext/nmatrix/storage/yale/yale.h +7 -6
- data/ext/nmatrix/types.h +3 -2
- data/ext/nmatrix/util/sl_list.h +19 -18
- data/ext/nmatrix_atlas/extconf.rb +11 -9
- data/ext/nmatrix_atlas/math_atlas.cpp +7 -7
- data/spec/00_nmatrix_spec.rb +6 -0
- data/spec/math_spec.rb +77 -0
- data/spec/spec_helper.rb +9 -0
- metadata +4 -4
data/spec/00_nmatrix_spec.rb
CHANGED
@@ -461,6 +461,12 @@ describe 'NMatrix' do
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|
461
461
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expect(n.transpose).to eq n
|
462
462
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expect(n.transpose).not_to be n
|
463
463
|
end
|
464
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+
|
465
|
+
it "should check permute argument if supplied for #{stype} matrix" do
|
466
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+
n = NMatrix.new([2,2], [1,2,3,4], stype: stype)
|
467
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+
expect{n.transpose *4 }.to raise_error(ArgumentError)
|
468
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+
expect{n.transpose [1,1,2] }.to raise_error(ArgumentError)
|
469
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+
end
|
464
470
|
end
|
465
471
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end
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466
472
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data/spec/math_spec.rb
CHANGED
@@ -553,6 +553,7 @@ describe "math" do
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553
553
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context "#solve" do
|
554
554
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NON_INTEGER_DTYPES.each do |dtype|
|
555
555
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next if dtype == :object # LU factorization doesnt work for :object yet
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556
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+
|
556
557
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it "solves linear equation for dtype #{dtype}" do
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557
558
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a = NMatrix.new [2,2], [3,1,1,2], dtype: dtype
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558
559
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b = NMatrix.new [2,1], [9,8], dtype: dtype
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@@ -581,6 +582,82 @@ describe "math" do
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581
582
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expect(a.solve(b)).to eq(NMatrix.new [3,2], [1,0, 0,0, 2,2], dtype: dtype)
|
582
583
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end
|
583
584
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end
|
585
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+
|
586
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+
FLOAT_DTYPES.each do |dtype|
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587
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+
context "when form: :lower_tri" do
|
588
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+
let(:a) { NMatrix.new([3,3], [1, 0, 0, 2, 0.5, 0, 3, 3, 9], dtype: dtype) }
|
589
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+
|
590
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+
it "solves a lower triangular linear system A * x = b with vector b" do
|
591
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+
b = NMatrix.new([3,1], [1,2,3], dtype: dtype)
|
592
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+
x = a.solve(b, form: :lower_tri)
|
593
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+
r = a.dot(x) - b
|
594
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+
expect(r.abs.max).to be_within(1e-6).of(0.0)
|
595
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+
end
|
596
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+
|
597
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+
it "solves a lower triangular linear system A * X = B with narrow B" do
|
598
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+
b = NMatrix.new([3,2], [1,2,3,4,5,6], dtype: dtype)
|
599
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+
x = a.solve(b, form: :lower_tri)
|
600
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+
r = (a.dot(x) - b).abs.to_flat_a
|
601
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+
expect(r.max).to be_within(1e-6).of(0.0)
|
602
|
+
end
|
603
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+
|
604
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+
it "solves a lower triangular linear system A * X = B with wide B" do
|
605
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+
b = NMatrix.new([3,5], (1..15).to_a, dtype: dtype)
|
606
|
+
x = a.solve(b, form: :lower_tri)
|
607
|
+
r = (a.dot(x) - b).abs.to_flat_a
|
608
|
+
expect(r.max).to be_within(1e-6).of(0.0)
|
609
|
+
end
|
610
|
+
end
|
611
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+
|
612
|
+
context "when form: :upper_tri" do
|
613
|
+
let(:a) { NMatrix.new([3,3], [3, 2, 1, 0, 2, 0.5, 0, 0, 9], dtype: dtype) }
|
614
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+
|
615
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+
it "solves an upper triangular linear system A * x = b with vector b" do
|
616
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+
b = NMatrix.new([3,1], [1,2,3], dtype: dtype)
|
617
|
+
x = a.solve(b, form: :upper_tri)
|
618
|
+
r = a.dot(x) - b
|
619
|
+
expect(r.abs.max).to be_within(1e-6).of(0.0)
|
620
|
+
end
|
621
|
+
|
622
|
+
it "solves an upper triangular linear system A * X = B with narrow B" do
|
623
|
+
b = NMatrix.new([3,2], [1,2,3,4,5,6], dtype: dtype)
|
624
|
+
x = a.solve(b, form: :upper_tri)
|
625
|
+
r = (a.dot(x) - b).abs.to_flat_a
|
626
|
+
expect(r.max).to be_within(1e-6).of(0.0)
|
627
|
+
end
|
628
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+
|
629
|
+
it "solves an upper triangular linear system A * X = B with a wide B" do
|
630
|
+
b = NMatrix.new([3,5], (1..15).to_a, dtype: dtype)
|
631
|
+
x = a.solve(b, form: :upper_tri)
|
632
|
+
r = (a.dot(x) - b).abs.to_flat_a
|
633
|
+
expect(r.max).to be_within(1e-6).of(0.0)
|
634
|
+
end
|
635
|
+
end
|
636
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+
|
637
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+
context "when form: :pos_def" do
|
638
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+
let(:a) { NMatrix.new([3,3], [4, 1, 2, 1, 5, 3, 2, 3, 6], dtype: dtype) }
|
639
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+
|
640
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+
it "solves a linear system A * X = b with positive definite A and vector b" do
|
641
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+
b = NMatrix.new([3,1], [6,4,8], dtype: dtype)
|
642
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+
begin
|
643
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+
x = a.solve(b, form: :pos_def)
|
644
|
+
expect(x).to be_within(1e-6).of(NMatrix.new([3,1], [1,0,1], dtype: dtype))
|
645
|
+
rescue NotImplementedError
|
646
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+
"Suppressing a NotImplementedError when the lapacke or atlas plugin is not available"
|
647
|
+
end
|
648
|
+
end
|
649
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+
|
650
|
+
it "solves a linear system A * X = B with positive definite A and matrix B" do
|
651
|
+
b = NMatrix.new([3,2], [8,3,14,13,14,19], dtype: dtype)
|
652
|
+
begin
|
653
|
+
x = a.solve(b, form: :pos_def)
|
654
|
+
expect(x).to be_within(1e-6).of(NMatrix.new([3,2], [1,-1,2,1,1,3], dtype: dtype))
|
655
|
+
rescue NotImplementedError
|
656
|
+
"Suppressing a NotImplementedError when the lapacke or atlas plugin is not available"
|
657
|
+
end
|
658
|
+
end
|
659
|
+
end
|
660
|
+
end
|
584
661
|
end
|
585
662
|
|
586
663
|
context "#hessenberg" do
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data/spec/spec_helper.rb
CHANGED
@@ -138,3 +138,12 @@ end
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|
138
138
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def integer_dtype? dtype
|
139
139
|
[:byte,:int8,:int16,:int32,:int64].include?(dtype)
|
140
140
|
end
|
141
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+
|
142
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+
# If a focus: true option is supplied to any test, running `rake spec focus=true`
|
143
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+
# will run only the focused tests and nothing else.
|
144
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+
if ENV["focus"] == "true"
|
145
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+
RSpec.configure do |c|
|
146
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+
c.filter_run :focus => true
|
147
|
+
end
|
148
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+
end
|
149
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+
|
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: nmatrix-atlas
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3
3
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version: !ruby/object:Gem::Version
|
4
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-
version: 0.2.
|
4
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+
version: 0.2.1
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5
5
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platform: ruby
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6
6
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authors:
|
7
7
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- John Woods
|
@@ -10,7 +10,7 @@ authors:
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|
10
10
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autorequire:
|
11
11
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bindir: bin
|
12
12
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cert_chain: []
|
13
|
-
date:
|
13
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+
date: 2016-01-18 00:00:00.000000000 Z
|
14
14
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dependencies:
|
15
15
|
- !ruby/object:Gem::Dependency
|
16
16
|
name: nmatrix
|
@@ -18,14 +18,14 @@ dependencies:
|
|
18
18
|
requirements:
|
19
19
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- - '='
|
20
20
|
- !ruby/object:Gem::Version
|
21
|
-
version: 0.2.
|
21
|
+
version: 0.2.1
|
22
22
|
type: :runtime
|
23
23
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prerelease: false
|
24
24
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version_requirements: !ruby/object:Gem::Requirement
|
25
25
|
requirements:
|
26
26
|
- - '='
|
27
27
|
- !ruby/object:Gem::Version
|
28
|
-
version: 0.2.
|
28
|
+
version: 0.2.1
|
29
29
|
description: For using linear algebra fuctions provided by ATLAS
|
30
30
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email:
|
31
31
|
- john.o.woods@gmail.com
|