nirvdrum-ai4r 1.9.1
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- data/.gitignore +1 -0
- data/.rakeTasks +7 -0
- data/README.rdoc +56 -0
- data/Rakefile.rb +42 -0
- data/VERSION +1 -0
- data/ai4r.gemspec +221 -0
- data/change_log +49 -0
- data/examples/classifiers/id3_data.csv +121 -0
- data/examples/classifiers/id3_example.rb +29 -0
- data/examples/classifiers/naive_bayes_data.csv +11 -0
- data/examples/classifiers/naive_bayes_example.rb +16 -0
- data/examples/classifiers/results.txt +31 -0
- data/examples/genetic_algorithm/genetic_algorithm_example.rb +37 -0
- data/examples/genetic_algorithm/travel_cost.csv +16 -0
- data/examples/neural_network/backpropagation_example.rb +67 -0
- data/examples/neural_network/patterns_with_base_noise.rb +68 -0
- data/examples/neural_network/patterns_with_noise.rb +66 -0
- data/examples/neural_network/training_patterns.rb +68 -0
- data/examples/neural_network/xor_example.rb +35 -0
- data/examples/som/som_data.rb +156 -0
- data/examples/som/som_multi_node_example.rb +22 -0
- data/examples/som/som_single_example.rb +24 -0
- data/lib/ai4r.rb +32 -0
- data/lib/ai4r/classifiers/classifier.rb +59 -0
- data/lib/ai4r/classifiers/hyperpipes.rb +118 -0
- data/lib/ai4r/classifiers/id3.rb +326 -0
- data/lib/ai4r/classifiers/multilayer_perceptron.rb +135 -0
- data/lib/ai4r/classifiers/naive_bayes.rb +259 -0
- data/lib/ai4r/classifiers/one_r.rb +110 -0
- data/lib/ai4r/classifiers/prism.rb +197 -0
- data/lib/ai4r/classifiers/zero_r.rb +73 -0
- data/lib/ai4r/clusterers/average_linkage.rb +59 -0
- data/lib/ai4r/clusterers/bisecting_k_means.rb +93 -0
- data/lib/ai4r/clusterers/centroid_linkage.rb +66 -0
- data/lib/ai4r/clusterers/clusterer.rb +61 -0
- data/lib/ai4r/clusterers/complete_linkage.rb +67 -0
- data/lib/ai4r/clusterers/diana.rb +139 -0
- data/lib/ai4r/clusterers/k_means.rb +126 -0
- data/lib/ai4r/clusterers/median_linkage.rb +61 -0
- data/lib/ai4r/clusterers/single_linkage.rb +194 -0
- data/lib/ai4r/clusterers/ward_linkage.rb +64 -0
- data/lib/ai4r/clusterers/weighted_average_linkage.rb +61 -0
- data/lib/ai4r/data/data_set.rb +266 -0
- data/lib/ai4r/data/parameterizable.rb +64 -0
- data/lib/ai4r/data/proximity.rb +100 -0
- data/lib/ai4r/data/statistics.rb +77 -0
- data/lib/ai4r/experiment/classifier_evaluator.rb +95 -0
- data/lib/ai4r/genetic_algorithm/genetic_algorithm.rb +270 -0
- data/lib/ai4r/neural_network/backpropagation.rb +293 -0
- data/lib/ai4r/neural_network/hopfield.rb +149 -0
- data/lib/ai4r/som/layer.rb +68 -0
- data/lib/ai4r/som/node.rb +96 -0
- data/lib/ai4r/som/som.rb +155 -0
- data/lib/ai4r/som/two_phase_layer.rb +90 -0
- data/site/forrest.properties +152 -0
- data/site/forrest.properties.dispatcher.properties +25 -0
- data/site/forrest.properties.xml +29 -0
- data/site/src/documentation/README.txt +7 -0
- data/site/src/documentation/classes/CatalogManager.properties +62 -0
- data/site/src/documentation/content/locationmap.xml +72 -0
- data/site/src/documentation/content/xdocs/downloads.html +9 -0
- data/site/src/documentation/content/xdocs/geneticAlgorithms.xml +294 -0
- data/site/src/documentation/content/xdocs/index.xml +155 -0
- data/site/src/documentation/content/xdocs/machineLearning.xml +131 -0
- data/site/src/documentation/content/xdocs/neuralNetworks.xml +270 -0
- data/site/src/documentation/content/xdocs/site.xml +54 -0
- data/site/src/documentation/content/xdocs/sourceCode.xml +43 -0
- data/site/src/documentation/content/xdocs/tabs.xml +35 -0
- data/site/src/documentation/resources/images/ai4r-logo.png +0 -0
- data/site/src/documentation/resources/images/c.png +0 -0
- data/site/src/documentation/resources/images/c_wbn.png +0 -0
- data/site/src/documentation/resources/images/c_wn.png +0 -0
- data/site/src/documentation/resources/images/ellipse-2.svg +30 -0
- data/site/src/documentation/resources/images/ero.gif +0 -0
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- data/site/src/documentation/resources/images/europe3.png +0 -0
- data/site/src/documentation/resources/images/fitness.png +0 -0
- data/site/src/documentation/resources/images/genetic_algorithms_example.png +0 -0
- data/site/src/documentation/resources/images/icon-a.png +0 -0
- data/site/src/documentation/resources/images/icon-b.png +0 -0
- data/site/src/documentation/resources/images/icon.png +0 -0
- data/site/src/documentation/resources/images/jadeferret.png +0 -0
- data/site/src/documentation/resources/images/my_email.png +0 -0
- data/site/src/documentation/resources/images/neural_network_example.png +0 -0
- data/site/src/documentation/resources/images/project-logo.png +0 -0
- data/site/src/documentation/resources/images/rubyforge.png +0 -0
- data/site/src/documentation/resources/images/s.png +0 -0
- data/site/src/documentation/resources/images/s_wbn.png +0 -0
- data/site/src/documentation/resources/images/s_wn.png +0 -0
- data/site/src/documentation/resources/images/sigmoid.png +0 -0
- data/site/src/documentation/resources/images/sub-dir/icon-c.png +0 -0
- data/site/src/documentation/resources/images/t.png +0 -0
- data/site/src/documentation/resources/images/t_wbn.png +0 -0
- data/site/src/documentation/resources/images/t_wn.png +0 -0
- data/site/src/documentation/resources/schema/catalog.xcat +29 -0
- data/site/src/documentation/resources/schema/hello-v10.dtd +51 -0
- data/site/src/documentation/resources/schema/symbols-project-v10.ent +26 -0
- data/site/src/documentation/resources/stylesheets/hello2document.xsl +33 -0
- data/site/src/documentation/sitemap.xmap +66 -0
- data/site/src/documentation/skinconf.xml +418 -0
- data/site/src/documentation/translations/langcode.xml +29 -0
- data/site/src/documentation/translations/languages_de.xml +24 -0
- data/site/src/documentation/translations/languages_en.xml +24 -0
- data/site/src/documentation/translations/languages_es.xml +22 -0
- data/site/src/documentation/translations/languages_fr.xml +24 -0
- data/site/src/documentation/translations/languages_nl.xml +24 -0
- data/site/src/documentation/translations/menu.xml +33 -0
- data/site/src/documentation/translations/menu_af.xml +33 -0
- data/site/src/documentation/translations/menu_de.xml +33 -0
- data/site/src/documentation/translations/menu_es.xml +33 -0
- data/site/src/documentation/translations/menu_fr.xml +33 -0
- data/site/src/documentation/translations/menu_it.xml +33 -0
- data/site/src/documentation/translations/menu_nl.xml +33 -0
- data/site/src/documentation/translations/menu_no.xml +33 -0
- data/site/src/documentation/translations/menu_ru.xml +33 -0
- data/site/src/documentation/translations/menu_sk.xml +33 -0
- data/site/src/documentation/translations/tabs.xml +22 -0
- data/site/src/documentation/translations/tabs_de.xml +22 -0
- data/site/src/documentation/translations/tabs_es.xml +22 -0
- data/site/src/documentation/translations/tabs_fr.xml +22 -0
- data/site/src/documentation/translations/tabs_nl.xml +22 -0
- data/test/classifiers/hyperpipes_test.rb +84 -0
- data/test/classifiers/id3_test.rb +208 -0
- data/test/classifiers/multilayer_perceptron_test.rb +79 -0
- data/test/classifiers/naive_bayes_test.rb +43 -0
- data/test/classifiers/one_r_test.rb +62 -0
- data/test/classifiers/prism_test.rb +85 -0
- data/test/classifiers/zero_r_test.rb +50 -0
- data/test/clusterers/average_linkage_test.rb +51 -0
- data/test/clusterers/bisecting_k_means_test.rb +66 -0
- data/test/clusterers/centroid_linkage_test.rb +53 -0
- data/test/clusterers/complete_linkage_test.rb +57 -0
- data/test/clusterers/diana_test.rb +69 -0
- data/test/clusterers/k_means_test.rb +100 -0
- data/test/clusterers/median_linkage_test.rb +53 -0
- data/test/clusterers/single_linkage_test.rb +122 -0
- data/test/clusterers/ward_linkage_test.rb +53 -0
- data/test/clusterers/weighted_average_linkage_test.rb +53 -0
- data/test/data/data_set.csv +121 -0
- data/test/data/data_set_test.rb +96 -0
- data/test/data/proximity_test.rb +81 -0
- data/test/data/statistics_data_set.csv +5 -0
- data/test/data/statistics_test.rb +65 -0
- data/test/experiment/classifier_evaluator_test.rb +76 -0
- data/test/genetic_algorithm/chromosome_test.rb +58 -0
- data/test/genetic_algorithm/genetic_algorithm_test.rb +81 -0
- data/test/neural_network/backpropagation_test.rb +69 -0
- data/test/neural_network/hopfield_test.rb +72 -0
- data/test/som/som_test.rb +97 -0
- metadata +238 -0
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# data is from the iris dataset (http://archive.ics.uci.edu/ml/datasets/Iris)
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# it is the full dataset, removing the last column
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# website provides additional information on the dataset itself (attributes, class distribution, etc)
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SOM_DATA = [
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[5.1, 3.5, 1.4, 0.2],
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[4.9, 3.0, 1.4, 0.2],
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[4.7, 3.2, 1.3, 0.2],
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[5.0, 3.4, 1.5, 0.2],
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[4.4, 2.9, 1.4, 0.2],
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[4.9, 3.1, 1.5, 0.1],
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[5.4, 3.7, 1.5, 0.2],
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[4.8, 3.4, 1.6, 0.2],
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[4.8, 3.0, 1.4, 0.1],
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[4.3, 3.0, 1.1, 0.1],
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[5.8, 4.0, 1.2, 0.2],
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[5.7, 4.4, 1.5, 0.4],
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[5.4, 3.9, 1.3, 0.4],
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[5.1, 3.5, 1.4, 0.3],
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[5.7, 3.8, 1.7, 0.3],
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[5.1, 3.8, 1.5, 0.3],
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[5.4, 3.4, 1.7, 0.2],
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[5.1, 3.7, 1.5, 0.4],
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[4.6, 3.6, 1.0, 0.2],
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[5.1, 3.3, 1.7, 0.5],
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[5.0, 3.0, 1.6, 0.2],
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[5.4, 3.4, 1.5, 0.4],
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[5.5, 4.2, 1.4, 0.2],
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[4.9, 3.1, 1.5, 0.1],
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[5.0, 3.2, 1.2, 0.2],
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[5.1, 3.8, 1.9, 0.4],
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[5.9, 3.0, 5.1, 1.8],
|
156
|
+
]
|
@@ -0,0 +1,22 @@
|
|
1
|
+
# this example shows the impact of the size of a som on the global error distance
|
2
|
+
require File.dirname(__FILE__) + '/../../lib/ai4r/som/som'
|
3
|
+
require File.dirname(__FILE__) + '/som_data'
|
4
|
+
require 'benchmark'
|
5
|
+
|
6
|
+
10.times do |t|
|
7
|
+
t += 3 # minimum number of nodes
|
8
|
+
|
9
|
+
puts "Nodes: #{t}"
|
10
|
+
som = Ai4r::Som::Som.new 4, 8, Ai4r::Som::TwoPhaseLayer.new(t)
|
11
|
+
som.initiate_map
|
12
|
+
|
13
|
+
puts "global error distance: #{som.global_error(SOM_DATA)}"
|
14
|
+
puts "\ntraining the som\n"
|
15
|
+
|
16
|
+
times = Benchmark.measure do
|
17
|
+
som.train SOM_DATA
|
18
|
+
end
|
19
|
+
|
20
|
+
puts "Elapsed time for training: #{times}"
|
21
|
+
puts "global error distance: #{som.global_error(SOM_DATA)}\n\n"
|
22
|
+
end
|
@@ -0,0 +1,24 @@
|
|
1
|
+
require File.dirname(__FILE__) + '/../../lib/ai4r/som/som'
|
2
|
+
require File.dirname(__FILE__) + '/som_data'
|
3
|
+
require 'benchmark'
|
4
|
+
|
5
|
+
som = Ai4r::Som::Som.new 4, 8, Ai4r::Som::TwoPhaseLayer.new(10)
|
6
|
+
som.initiate_map
|
7
|
+
|
8
|
+
som.nodes.each do |node|
|
9
|
+
p node.weights
|
10
|
+
end
|
11
|
+
|
12
|
+
puts "global error distance: #{som.global_error(SOM_DATA)}"
|
13
|
+
puts "\ntraining the som\n"
|
14
|
+
|
15
|
+
times = Benchmark.measure do
|
16
|
+
som.train SOM_DATA
|
17
|
+
end
|
18
|
+
|
19
|
+
som.nodes.each do |node|
|
20
|
+
p node.weights
|
21
|
+
end
|
22
|
+
|
23
|
+
puts "Elapsed time for training: #{times}"
|
24
|
+
puts "global error distance: #{som.global_error(SOM_DATA)}\n\n"
|
data/lib/ai4r.rb
ADDED
@@ -0,0 +1,32 @@
|
|
1
|
+
# Data
|
2
|
+
require File.dirname(__FILE__) + "/ai4r/data/data_set"
|
3
|
+
require File.dirname(__FILE__) + "/ai4r/data/statistics"
|
4
|
+
require File.dirname(__FILE__) + "/ai4r/data/proximity"
|
5
|
+
require File.dirname(__FILE__) + "/ai4r/data/parameterizable"
|
6
|
+
# Clusterers
|
7
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/clusterer"
|
8
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/k_means"
|
9
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/bisecting_k_means"
|
10
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/single_linkage"
|
11
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/complete_linkage"
|
12
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/average_linkage"
|
13
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/weighted_average_linkage"
|
14
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/centroid_linkage"
|
15
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/median_linkage"
|
16
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/ward_linkage"
|
17
|
+
require File.dirname(__FILE__) + "/ai4r/clusterers/diana"
|
18
|
+
# Classifiers
|
19
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/classifier"
|
20
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/id3"
|
21
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/prism"
|
22
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/one_r"
|
23
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/zero_r"
|
24
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/hyperpipes"
|
25
|
+
require File.dirname(__FILE__) + "/ai4r/classifiers/naive_bayes"
|
26
|
+
# Neural networks
|
27
|
+
require File.dirname(__FILE__) + "/ai4r/neural_network/backpropagation"
|
28
|
+
require File.dirname(__FILE__) + "/ai4r/neural_network/hopfield"
|
29
|
+
# Genetic Algorithms
|
30
|
+
require File.dirname(__FILE__) + "/ai4r/genetic_algorithm/genetic_algorithm"
|
31
|
+
# SOM
|
32
|
+
require File.dirname(__FILE__) + "/ai4r/som/som"
|
@@ -0,0 +1,59 @@
|
|
1
|
+
# Author:: Sergio Fierens
|
2
|
+
# License:: MPL 1.1
|
3
|
+
# Project:: ai4r
|
4
|
+
# Url:: http://ai4r.rubyforge.org
|
5
|
+
#
|
6
|
+
# You can redistribute it and/or modify it under the terms of
|
7
|
+
# the Mozilla Public License version 1.1 as published by the
|
8
|
+
# Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
|
9
|
+
|
10
|
+
require File.dirname(__FILE__) + '/../data/parameterizable'
|
11
|
+
|
12
|
+
module Ai4r
|
13
|
+
module Classifiers
|
14
|
+
|
15
|
+
# This class defines a common API for classifiers.
|
16
|
+
# All methods in this class must be implemented in subclasses.
|
17
|
+
class Classifier
|
18
|
+
|
19
|
+
include Ai4r::Data::Parameterizable
|
20
|
+
|
21
|
+
# Build a new classifier, using data examples found in data_set.
|
22
|
+
# The last attribute of each item is considered as the
|
23
|
+
# item class.
|
24
|
+
def build(data_set)
|
25
|
+
raise NotImplementedError
|
26
|
+
end
|
27
|
+
|
28
|
+
# You can evaluate new data, predicting its class.
|
29
|
+
# e.g.
|
30
|
+
# classifier.eval(['New York', '<30', 'F']) # => 'Y'
|
31
|
+
def eval(data)
|
32
|
+
raise NotImplementedError
|
33
|
+
end
|
34
|
+
|
35
|
+
# This method returns the generated rules in ruby code.
|
36
|
+
# e.g.
|
37
|
+
#
|
38
|
+
# classifier.get_rules
|
39
|
+
# # => if age_range=='<30' then marketing_target='Y'
|
40
|
+
# elsif age_range=='[30-50)' and city=='Chicago' then marketing_target='Y'
|
41
|
+
# elsif age_range=='[30-50)' and city=='New York' then marketing_target='N'
|
42
|
+
# elsif age_range=='[50-80]' then marketing_target='N'
|
43
|
+
# elsif age_range=='>80' then marketing_target='Y'
|
44
|
+
# else raise 'There was not enough information during training to do a proper induction for this data element' end
|
45
|
+
#
|
46
|
+
# It is a nice way to inspect induction results, and also to execute them:
|
47
|
+
# age_range = '<30'
|
48
|
+
# city='New York'
|
49
|
+
# marketing_target = nil
|
50
|
+
# eval classifier.get_rules
|
51
|
+
# puts marketing_target
|
52
|
+
# # => 'Y'
|
53
|
+
def get_rules
|
54
|
+
raise NotImplementedError
|
55
|
+
end
|
56
|
+
|
57
|
+
end
|
58
|
+
end
|
59
|
+
end
|
@@ -0,0 +1,118 @@
|
|
1
|
+
# Author:: Sergio Fierens (Implementation only)
|
2
|
+
# License:: MPL 1.1
|
3
|
+
# Project:: ai4r
|
4
|
+
# Url:: http://ai4r.rubyforge.org/
|
5
|
+
#
|
6
|
+
# You can redistribute it and/or modify it under the terms of
|
7
|
+
# the Mozilla Public License version 1.1 as published by the
|
8
|
+
# Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
|
9
|
+
|
10
|
+
require 'set'
|
11
|
+
require File.dirname(__FILE__) + '/../data/data_set'
|
12
|
+
require File.dirname(__FILE__) + '/../classifiers/classifier'
|
13
|
+
|
14
|
+
module Ai4r
|
15
|
+
module Classifiers
|
16
|
+
|
17
|
+
include Ai4r::Data
|
18
|
+
|
19
|
+
# = Introduction
|
20
|
+
#
|
21
|
+
# A fast classifier algorithm, created by Lucio de Souza Coelho
|
22
|
+
# and Len Trigg.
|
23
|
+
class Hyperpipes < Classifier
|
24
|
+
|
25
|
+
attr_reader :data_set, :pipes
|
26
|
+
|
27
|
+
# Build a new Hyperpipes classifier. You must provide a DataSet instance
|
28
|
+
# as parameter. The last attribute of each item is considered as
|
29
|
+
# the item class.
|
30
|
+
def build(data_set)
|
31
|
+
data_set.check_not_empty
|
32
|
+
@data_set = data_set
|
33
|
+
@domains = data_set.build_domains
|
34
|
+
|
35
|
+
@pipes = {}
|
36
|
+
@domains.last.each {|cat| @pipes[cat] = build_pipe(@data_set)}
|
37
|
+
@data_set.data_items.each {|item| update_pipe(@pipes[item.last], item) }
|
38
|
+
|
39
|
+
return self
|
40
|
+
end
|
41
|
+
|
42
|
+
# You can evaluate new data, predicting its class.
|
43
|
+
# e.g.
|
44
|
+
# classifier.eval(['New York', '<30', 'F']) # => 'Y'
|
45
|
+
def eval(data)
|
46
|
+
votes = Hash.new {0}
|
47
|
+
@pipes.each do |category, pipe|
|
48
|
+
pipe.each_with_index do |bounds, i|
|
49
|
+
if data[i].is_a? Numeric
|
50
|
+
votes[category]+=1 if data[i]>=bounds[:min] && data[i]<=bounds[:max]
|
51
|
+
else
|
52
|
+
votes[category]+=1 if bounds[data[i]]
|
53
|
+
end
|
54
|
+
end
|
55
|
+
end
|
56
|
+
return votes.to_a.max {|x, y| x.last <=> y.last}.first
|
57
|
+
end
|
58
|
+
|
59
|
+
# This method returns the generated rules in ruby code.
|
60
|
+
# e.g.
|
61
|
+
#
|
62
|
+
# classifier.get_rules
|
63
|
+
# # => if age_range == '<30' then marketing_target = 'Y'
|
64
|
+
# elsif age_range == '[30-50)' then marketing_target = 'N'
|
65
|
+
# elsif age_range == '[50-80]' then marketing_target = 'N'
|
66
|
+
# end
|
67
|
+
#
|
68
|
+
# It is a nice way to inspect induction results, and also to execute them:
|
69
|
+
# marketing_target = nil
|
70
|
+
# eval classifier.get_rules
|
71
|
+
# puts marketing_target
|
72
|
+
# # => 'Y'
|
73
|
+
def get_rules
|
74
|
+
rules = []
|
75
|
+
rules << "votes = Hash.new {0}"
|
76
|
+
data = @data_set.data_items.first
|
77
|
+
labels = @data_set.data_labels.collect {|l| l.to_s}
|
78
|
+
@pipes.each do |category, pipe|
|
79
|
+
pipe.each_with_index do |bounds, i|
|
80
|
+
rule = "votes['#{category}'] += 1 "
|
81
|
+
if data[i].is_a? Numeric
|
82
|
+
rule += "if #{labels[i]} >= #{bounds[:min]} && #{labels[i]} <= #{bounds[:max]}"
|
83
|
+
else
|
84
|
+
rule += "if #{bounds.inspect}[#{labels[i]}]"
|
85
|
+
end
|
86
|
+
rules << rule
|
87
|
+
end
|
88
|
+
end
|
89
|
+
rules << "#{labels.last} = votes.to_a.max {|x, y| x.last <=> y.last}.first"
|
90
|
+
return rules.join("\n")
|
91
|
+
end
|
92
|
+
|
93
|
+
protected
|
94
|
+
|
95
|
+
def build_pipe(data_set)
|
96
|
+
data_set.data_items.first[0...-1].collect do |att|
|
97
|
+
if att.is_a? Numeric
|
98
|
+
{:min=>1.0/0, :max=>-1.0/0}
|
99
|
+
else
|
100
|
+
Hash.new(false)
|
101
|
+
end
|
102
|
+
end
|
103
|
+
end
|
104
|
+
|
105
|
+
def update_pipe(pipe, data_item)
|
106
|
+
data_item[0...-1].each_with_index do |att, i|
|
107
|
+
if att.is_a? Numeric
|
108
|
+
pipe[i][:min] = att if att < pipe[i][:min]
|
109
|
+
pipe[i][:max] = att if att > pipe[i][:max]
|
110
|
+
else
|
111
|
+
pipe[i][att] = true
|
112
|
+
end
|
113
|
+
end
|
114
|
+
end
|
115
|
+
|
116
|
+
end
|
117
|
+
end
|
118
|
+
end
|
@@ -0,0 +1,326 @@
|
|
1
|
+
# Author:: Sergio Fierens (Implementation, Quinlan is
|
2
|
+
# the creator of the algorithm)
|
3
|
+
# License:: MPL 1.1
|
4
|
+
# Project:: ai4r
|
5
|
+
# Url:: http://ai4r.rubyforge.org/
|
6
|
+
#
|
7
|
+
# You can redistribute it and/or modify it under the terms of
|
8
|
+
# the Mozilla Public License version 1.1 as published by the
|
9
|
+
# Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
|
10
|
+
|
11
|
+
require File.dirname(__FILE__) + '/../data/data_set'
|
12
|
+
require File.dirname(__FILE__) + '/../classifiers/classifier'
|
13
|
+
|
14
|
+
module Ai4r
|
15
|
+
|
16
|
+
module Classifiers
|
17
|
+
|
18
|
+
# = Introduction
|
19
|
+
# This is an implementation of the ID3 algorithm (Quinlan)
|
20
|
+
# Given a set of preclassified examples, it builds a top-down
|
21
|
+
# induction of decision tree, biased by the information gain and
|
22
|
+
# entropy measure.
|
23
|
+
#
|
24
|
+
# * http://en.wikipedia.org/wiki/Decision_tree
|
25
|
+
# * http://en.wikipedia.org/wiki/ID3_algorithm
|
26
|
+
#
|
27
|
+
# = How to use it
|
28
|
+
#
|
29
|
+
# DATA_LABELS = [ 'city', 'age_range', 'gender', 'marketing_target' ]
|
30
|
+
#
|
31
|
+
# DATA_ITEMS = [
|
32
|
+
# ['New York', '<30', 'M', 'Y'],
|
33
|
+
# ['Chicago', '<30', 'M', 'Y'],
|
34
|
+
# ['Chicago', '<30', 'F', 'Y'],
|
35
|
+
# ['New York', '<30', 'M', 'Y'],
|
36
|
+
# ['New York', '<30', 'M', 'Y'],
|
37
|
+
# ['Chicago', '[30-50)', 'M', 'Y'],
|
38
|
+
# ['New York', '[30-50)', 'F', 'N'],
|
39
|
+
# ['Chicago', '[30-50)', 'F', 'Y'],
|
40
|
+
# ['New York', '[30-50)', 'F', 'N'],
|
41
|
+
# ['Chicago', '[50-80]', 'M', 'N'],
|
42
|
+
# ['New York', '[50-80]', 'F', 'N'],
|
43
|
+
# ['New York', '[50-80]', 'M', 'N'],
|
44
|
+
# ['Chicago', '[50-80]', 'M', 'N'],
|
45
|
+
# ['New York', '[50-80]', 'F', 'N'],
|
46
|
+
# ['Chicago', '>80', 'F', 'Y']
|
47
|
+
# ]
|
48
|
+
#
|
49
|
+
# data_set = DataSet.new(:data_items=>DATA_SET, :data_labels=>DATA_LABELS)
|
50
|
+
# id3 = Ai4r::Classifiers::ID3.new.build(data_set)
|
51
|
+
#
|
52
|
+
# id3.get_rules
|
53
|
+
# # => if age_range=='<30' then marketing_target='Y'
|
54
|
+
# elsif age_range=='[30-50)' and city=='Chicago' then marketing_target='Y'
|
55
|
+
# elsif age_range=='[30-50)' and city=='New York' then marketing_target='N'
|
56
|
+
# elsif age_range=='[50-80]' then marketing_target='N'
|
57
|
+
# elsif age_range=='>80' then marketing_target='Y'
|
58
|
+
# else raise 'There was not enough information during training to do a proper induction for this data element' end
|
59
|
+
#
|
60
|
+
# id3.eval(['New York', '<30', 'M'])
|
61
|
+
# # => 'Y'
|
62
|
+
#
|
63
|
+
# = A better way to load the data
|
64
|
+
#
|
65
|
+
# In the real life you will use lot more data training examples, with more
|
66
|
+
# attributes. Consider moving your data to an external CSV (comma separate
|
67
|
+
# values) file.
|
68
|
+
#
|
69
|
+
# data_file = "#{File.dirname(__FILE__)}/data_set.csv"
|
70
|
+
# data_set = DataSet.load_csv_with_labels data_file
|
71
|
+
# id3 = Ai4r::Classifiers::ID3.new.build(data_set)
|
72
|
+
#
|
73
|
+
# = A nice tip for data evaluation
|
74
|
+
#
|
75
|
+
# id3 = Ai4r::Classifiers::ID3.new.build(data_set)
|
76
|
+
#
|
77
|
+
# age_range = '<30'
|
78
|
+
# marketing_target = nil
|
79
|
+
# eval id3.get_rules
|
80
|
+
# puts marketing_target
|
81
|
+
# # => 'Y'
|
82
|
+
#
|
83
|
+
# = More about ID3 and decision trees
|
84
|
+
#
|
85
|
+
# * http://en.wikipedia.org/wiki/Decision_tree
|
86
|
+
# * http://en.wikipedia.org/wiki/ID3_algorithm
|
87
|
+
#
|
88
|
+
# = About the project
|
89
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+
# Author:: Sergio Fierens
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# License:: MPL 1.1
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# Url:: http://ai4r.rubyforge.org/
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class ID3 < Classifier
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attr_reader :data_set
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# Create a new ID3 classifier. You must provide a DataSet instance
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# as parameter. The last attribute of each item is considered as the
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# item class.
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def build(data_set)
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data_set.check_not_empty
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@data_set = data_set
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preprocess_data(@data_set.data_items)
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return self
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end
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# You can evaluate new data, predicting its category.
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# e.g.
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# id3.eval(['New York', '<30', 'F']) # => 'Y'
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def eval(data)
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@tree.value(data) if @tree
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end
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# This method returns the generated rules in ruby code.
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# e.g.
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#
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# id3.get_rules
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# # => if age_range=='<30' then marketing_target='Y'
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# elsif age_range=='[30-50)' and city=='Chicago' then marketing_target='Y'
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# elsif age_range=='[30-50)' and city=='New York' then marketing_target='N'
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# elsif age_range=='[50-80]' then marketing_target='N'
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# elsif age_range=='>80' then marketing_target='Y'
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# else raise 'There was not enough information during training to do a proper induction for this data element' end
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#
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# It is a nice way to inspect induction results, and also to execute them:
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# age_range = '<30'
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# marketing_target = nil
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# eval id3.get_rules
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# puts marketing_target
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# # => 'Y'
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def get_rules
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#return "Empty ID3 tree" if !@tree
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rules = @tree.get_rules
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rules = rules.collect do |rule|
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"#{rule[0..-2].join(' and ')} then #{rule.last}"
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end
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return "if #{rules.join("\nelsif ")}\nelse raise 'There was not enough information during training to do a proper induction for this data element' end"
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end
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private
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def preprocess_data(data_examples)
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@tree = build_node(data_examples)
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end
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private
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def build_node(data_examples, flag_att = [])
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return ErrorNode.new if data_examples.length == 0
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domain = domain(data_examples)
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return CategoryNode.new(@data_set.data_labels.last, domain.last[0]) if domain.last.length == 1
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min_entropy_index = min_entropy_index(data_examples, domain, flag_att)
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flag_att << min_entropy_index
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split_data_examples = split_data_examples(data_examples, domain, min_entropy_index)
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return CategoryNode.new(@data_set.data_labels.last, most_freq(data_examples, domain)) if split_data_examples.length == 1
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nodes = split_data_examples.collect do |partial_data_examples|
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build_node(partial_data_examples, flag_att)
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end
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return EvaluationNode.new(@data_set.data_labels, min_entropy_index, domain[min_entropy_index], nodes)
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end
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private
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def self.sum(values)
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values.inject( 0 ) { |sum,x| sum+x }
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end
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private
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def self.log2(z)
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return 0.0 if z == 0
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Math.log(z)/LOG2
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end
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private
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def most_freq(examples, domain)
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freqs = []
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domain.last.length.times { freqs << 0}
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examples.each do |example|
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cat_index = domain.last.index(example.last)
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freq = freqs[cat_index] + 1
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freqs[cat_index] = freq
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end
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max_freq = freqs.max
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max_freq_index = freqs.index(max_freq)
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domain.last[max_freq_index]
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end
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private
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def split_data_examples(data_examples, domain, att_index)
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data_examples_array = []
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att_value_examples = {}
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data_examples.each do |example|
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example_set = att_value_examples[example[att_index]]
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example_set = [] if !example_set
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example_set << example
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att_value_examples.store(example[att_index], example_set)
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end
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att_value_examples.each_pair do |att_value, example_set|
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att_value_index = domain[att_index].index(att_value)
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data_examples_array[att_value_index] = example_set
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end
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return data_examples_array
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end
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private
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def min_entropy_index(data_examples, domain, flag_att=[])
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min_entropy = nil
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min_index = 0
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domain[0..-2].each_index do |index|
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freq_grid = freq_grid(index, data_examples, domain)
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entropy = entropy(freq_grid, data_examples.length)
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if (!min_entropy || entropy < min_entropy) && !flag_att.include?(index)
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min_entropy = entropy
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min_index = index
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end
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end
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return min_index
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end
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private
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def domain(data_examples)
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#return build_domains(data_examples)
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domain = []
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@data_set.data_labels.length.times { domain << [] }
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data_examples.each do |data|
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data.each_index do |i|
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domain[i] << data[i] if i<domain.length && !domain[i].include?(data[i])
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end
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end
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return domain
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end
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private
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def freq_grid(att_index, data_examples, domain)
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#Initialize empty grid
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grid_element = []
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domain.last.length.times { grid_element << 0}
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grid = []
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domain[att_index].length.times { grid << grid_element.clone }
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#Fill frecuency with grid
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data_examples.each do |example|
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att_val = example[att_index]
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att_val_index = domain[att_index].index(att_val)
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category = example.last
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category_index = domain.last.index(category)
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freq = grid[att_val_index][category_index] + 1
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grid[att_val_index][category_index] = freq
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end
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return grid
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end
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private
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def entropy(freq_grid, total_examples)
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#Calc entropy of each element
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entropy = 0
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freq_grid.each do |att_freq|
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att_total_freq = ID3.sum(att_freq)
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partial_entropy = 0
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if att_total_freq != 0
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att_freq.each do |freq|
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prop = freq.to_f/att_total_freq
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partial_entropy += (-1*prop*ID3.log2(prop))
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end
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end
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entropy += (att_total_freq.to_f/total_examples) * partial_entropy
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end
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return entropy
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end
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private
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LOG2 = Math.log(2)
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end
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class EvaluationNode #:nodoc: all
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attr_reader :index, :values, :nodes
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def initialize(data_labels, index, values, nodes)
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@index = index
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@values = values
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@nodes = nodes
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@data_labels = data_labels
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end
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def value(data)
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value = data[@index]
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return rule_not_found if !@values.include?(value)
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return nodes[@values.index(value)].value(data)
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end
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def get_rules
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rule_set = []
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@nodes.each_index do |child_node_index|
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my_rule = "#{@data_labels[@index]}=='#{@values[child_node_index]}'"
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child_node = @nodes[child_node_index]
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child_node_rules = child_node.get_rules
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child_node_rules.each do |child_rule|
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child_rule.unshift(my_rule)
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end
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rule_set += child_node_rules
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end
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return rule_set
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end
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end
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class CategoryNode #:nodoc: all
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def initialize(label, value)
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@label = label
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@value = value
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end
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def value(data)
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return @value
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end
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def get_rules
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return [["#{@label}='#{@value}'"]]
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end
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end
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class ErrorNode #:nodoc: all
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def value(data)
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raise "There was not enough information during training to do a proper induction for this data element."
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end
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def get_rules
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return []
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end
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end
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end
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end
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