nimbus 2.2.0 → 2.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/lib/nimbus/forest.rb +1 -1
- data/lib/nimbus/version.rb +1 -1
- data/spec/forest_spec.rb +1 -1
- metadata +4 -4
data/lib/nimbus/forest.rb
CHANGED
|
@@ -79,7 +79,7 @@ module Nimbus
|
|
|
79
79
|
individual_prediction << Nimbus::Tree.traverse(t, individual.snp_list)
|
|
80
80
|
end
|
|
81
81
|
class_sizes = Nimbus::LossFunctions.class_sizes_in_list(individual_prediction, @options.tree[:classes]).map{|p| (p/individual_prediction.size.to_f).round(3)}
|
|
82
|
-
@predictions[individual.id] = Hash[@options.tree[:classes].zip class_sizes].
|
|
82
|
+
@predictions[individual.id] = Hash[@options.tree[:classes].zip class_sizes].map{|k,v| "'#{k}': #{v}"}.join(' , ')
|
|
83
83
|
}
|
|
84
84
|
end
|
|
85
85
|
|
data/lib/nimbus/version.rb
CHANGED
data/spec/forest_spec.rb
CHANGED
|
@@ -117,7 +117,7 @@ describe Nimbus::Forest do
|
|
|
117
117
|
individual_prediction << Nimbus::Tree.traverse(t, individual.snp_list)
|
|
118
118
|
end
|
|
119
119
|
class_sizes = Nimbus::LossFunctions.class_sizes_in_list(individual_prediction, @config.tree[:classes]).map{|p| (p/individual_prediction.size.to_f).round(3)}
|
|
120
|
-
expected_predictions[individual.id] = Hash[@config.tree[:classes].zip class_sizes].
|
|
120
|
+
expected_predictions[individual.id] = Hash[@config.tree[:classes].zip class_sizes].map{|k,v| "'#{k}': #{v}"}.join(' , ')
|
|
121
121
|
}
|
|
122
122
|
|
|
123
123
|
@forest.traverse
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: nimbus
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 2.2.
|
|
4
|
+
version: 2.2.1
|
|
5
5
|
prerelease:
|
|
6
6
|
platform: ruby
|
|
7
7
|
authors:
|
|
@@ -10,11 +10,11 @@ authors:
|
|
|
10
10
|
autorequire:
|
|
11
11
|
bindir: bin
|
|
12
12
|
cert_chain: []
|
|
13
|
-
date: 2012-07-
|
|
13
|
+
date: 2012-07-30 00:00:00.000000000 Z
|
|
14
14
|
dependencies:
|
|
15
15
|
- !ruby/object:Gem::Dependency
|
|
16
16
|
name: rspec
|
|
17
|
-
requirement: &
|
|
17
|
+
requirement: &2161078680 !ruby/object:Gem::Requirement
|
|
18
18
|
none: false
|
|
19
19
|
requirements:
|
|
20
20
|
- - ! '>='
|
|
@@ -22,7 +22,7 @@ dependencies:
|
|
|
22
22
|
version: 2.11.0
|
|
23
23
|
type: :development
|
|
24
24
|
prerelease: false
|
|
25
|
-
version_requirements: *
|
|
25
|
+
version_requirements: *2161078680
|
|
26
26
|
description: Nimbus is a Ruby gem to implement Random Forest in a genomic selection
|
|
27
27
|
context.
|
|
28
28
|
email:
|