nimbus 1.0.1 → 2.0.0

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Files changed (29) hide show
  1. data/README.md +149 -0
  2. data/lib/nimbus.rb +15 -11
  3. data/lib/nimbus/application.rb +20 -23
  4. data/lib/nimbus/classification_tree.rb +111 -0
  5. data/lib/nimbus/configuration.rb +52 -37
  6. data/lib/nimbus/forest.rb +56 -20
  7. data/lib/nimbus/individual.rb +7 -7
  8. data/lib/nimbus/loss_functions.rb +44 -10
  9. data/lib/nimbus/regression_tree.rb +103 -0
  10. data/lib/nimbus/training_set.rb +4 -4
  11. data/lib/nimbus/tree.rb +20 -83
  12. data/lib/nimbus/version.rb +3 -0
  13. data/spec/classification_tree_spec.rb +132 -0
  14. data/spec/configuration_spec.rb +46 -19
  15. data/spec/fixtures/classification_config.yml +13 -0
  16. data/spec/fixtures/classification_random_forest.yml +922 -0
  17. data/spec/fixtures/classification_testing.data +500 -0
  18. data/spec/fixtures/classification_training.data +1000 -0
  19. data/spec/forest_spec.rb +109 -50
  20. data/spec/individual_spec.rb +2 -2
  21. data/spec/loss_functions_spec.rb +71 -0
  22. data/spec/nimbus_spec.rb +4 -4
  23. data/spec/regression_tree_spec.rb +129 -0
  24. data/spec/training_set_spec.rb +5 -5
  25. data/spec/tree_spec.rb +4 -115
  26. metadata +53 -45
  27. data/spec/fixtures/regression_snp_importances.txt +0 -200
  28. data/spec/fixtures/regression_testing_file_predictions.txt +0 -200
  29. data/spec/fixtures/regression_training_file_predictions.txt +0 -758
data/spec/fixtures/regression_training_file_predictions.txt DELETED
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