nexus_parser 1.1.4 → 1.2.1

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metadata CHANGED
@@ -1,88 +1,136 @@
1
- --- !ruby/object:Gem::Specification
1
+ --- !ruby/object:Gem::Specification
2
2
  name: nexus_parser
3
- version: !ruby/object:Gem::Version
4
- hash: 27
5
- prerelease:
6
- segments:
7
- - 1
8
- - 1
9
- - 4
10
- version: 1.1.4
3
+ version: !ruby/object:Gem::Version
4
+ version: 1.2.1
11
5
  platform: ruby
12
- authors:
6
+ authors:
13
7
  - mjy
14
- autorequire:
15
- bindir: bin
8
+ - kleintom
9
+ autorequire:
10
+ bindir: exe
16
11
  cert_chain: []
17
-
18
- date: 2011-04-12 00:00:00 -04:00
19
- default_executable:
20
- dependencies: []
21
-
22
- description: "A full featured and extensible Nexus file parser in Ruby. "
23
- email: diapriid@gmail.com
12
+ date: 2024-05-03 00:00:00.000000000 Z
13
+ dependencies:
14
+ - !ruby/object:Gem::Dependency
15
+ name: bundler
16
+ requirement: !ruby/object:Gem::Requirement
17
+ requirements:
18
+ - - "~>"
19
+ - !ruby/object:Gem::Version
20
+ version: '2.0'
21
+ type: :development
22
+ prerelease: false
23
+ version_requirements: !ruby/object:Gem::Requirement
24
+ requirements:
25
+ - - "~>"
26
+ - !ruby/object:Gem::Version
27
+ version: '2.0'
28
+ - !ruby/object:Gem::Dependency
29
+ name: rake
30
+ requirement: !ruby/object:Gem::Requirement
31
+ requirements:
32
+ - - "~>"
33
+ - !ruby/object:Gem::Version
34
+ version: '13.0'
35
+ type: :development
36
+ prerelease: false
37
+ version_requirements: !ruby/object:Gem::Requirement
38
+ requirements:
39
+ - - "~>"
40
+ - !ruby/object:Gem::Version
41
+ version: '13.0'
42
+ - !ruby/object:Gem::Dependency
43
+ name: rdoc
44
+ requirement: !ruby/object:Gem::Requirement
45
+ requirements:
46
+ - - "~>"
47
+ - !ruby/object:Gem::Version
48
+ version: 6.6.2
49
+ type: :development
50
+ prerelease: false
51
+ version_requirements: !ruby/object:Gem::Requirement
52
+ requirements:
53
+ - - "~>"
54
+ - !ruby/object:Gem::Version
55
+ version: 6.6.2
56
+ - !ruby/object:Gem::Dependency
57
+ name: byebug
58
+ requirement: !ruby/object:Gem::Requirement
59
+ requirements:
60
+ - - "~>"
61
+ - !ruby/object:Gem::Version
62
+ version: '11.1'
63
+ type: :development
64
+ prerelease: false
65
+ version_requirements: !ruby/object:Gem::Requirement
66
+ requirements:
67
+ - - "~>"
68
+ - !ruby/object:Gem::Version
69
+ version: '11.1'
70
+ - !ruby/object:Gem::Dependency
71
+ name: test-unit
72
+ requirement: !ruby/object:Gem::Requirement
73
+ requirements:
74
+ - - ">="
75
+ - !ruby/object:Gem::Version
76
+ version: '0'
77
+ type: :development
78
+ prerelease: false
79
+ version_requirements: !ruby/object:Gem::Requirement
80
+ requirements:
81
+ - - ">="
82
+ - !ruby/object:Gem::Version
83
+ version: '0'
84
+ description: A full featured and extensible Nexus file parser in Ruby.
85
+ email:
86
+ - diapriid@gmail.com
24
87
  executables: []
25
-
26
88
  extensions: []
27
-
28
- extra_rdoc_files:
89
+ extra_rdoc_files:
29
90
  - LICENSE
30
- - README
31
- - README.rdoc
32
- files:
33
- - .document
34
- - .gitignore
91
+ - README.md
92
+ files:
93
+ - ".document"
94
+ - ".gitignore"
35
95
  - LICENSE
36
- - MIT-LICENSE
37
- - README
38
- - README.rdoc
96
+ - README.md
39
97
  - Rakefile
40
- - VERSION
41
- - init.rb
42
98
  - install.rb
43
- - lib/lexer.rb
44
99
  - lib/nexus_parser.rb
45
- - lib/parser.rb
46
- - lib/tokens.rb
100
+ - lib/nexus_parser/lexer.rb
101
+ - lib/nexus_parser/parser.rb
102
+ - lib/nexus_parser/tokens.rb
103
+ - lib/nexus_parser/version.rb
47
104
  - nexus_parser.gemspec
48
105
  - tasks/nexus_parser_tasks.rake
49
106
  - test/MX_test_03.nex
50
107
  - test/test.nex
51
108
  - test/test_nexus_parser.rb
52
109
  - uninstall.rb
53
- has_rdoc: true
54
110
  homepage: http://github.com/mjy/nexus_parser
55
111
  licenses: []
56
-
57
- post_install_message:
58
- rdoc_options:
59
- - --charset=UTF-8
60
- require_paths:
112
+ metadata:
113
+ homepage_uri: http://github.com/mjy/nexus_parser
114
+ source_code_uri: http://github.com/mjy/nexus_parser
115
+ post_install_message:
116
+ rdoc_options:
117
+ - "--charset=UTF-8"
118
+ require_paths:
61
119
  - lib
62
- required_ruby_version: !ruby/object:Gem::Requirement
63
- none: false
64
- requirements:
120
+ required_ruby_version: !ruby/object:Gem::Requirement
121
+ requirements:
65
122
  - - ">="
66
- - !ruby/object:Gem::Version
67
- hash: 3
68
- segments:
69
- - 0
70
- version: "0"
71
- required_rubygems_version: !ruby/object:Gem::Requirement
72
- none: false
73
- requirements:
123
+ - !ruby/object:Gem::Version
124
+ version: 3.3.0
125
+ required_rubygems_version: !ruby/object:Gem::Requirement
126
+ requirements:
74
127
  - - ">="
75
- - !ruby/object:Gem::Version
76
- hash: 3
77
- segments:
78
- - 0
79
- version: "0"
128
+ - !ruby/object:Gem::Version
129
+ version: '0'
80
130
  requirements: []
81
-
82
- rubyforge_project:
83
- rubygems_version: 1.5.3
84
- signing_key:
85
- specification_version: 3
131
+ rubygems_version: 3.5.9
132
+ signing_key:
133
+ specification_version: 4
86
134
  summary: A Nexus file format (phylogenetic inference) parser in Ruby.
87
- test_files:
135
+ test_files:
88
136
  - test/test_nexus_parser.rb
data/MIT-LICENSE DELETED
@@ -1,20 +0,0 @@
1
- Copyright (c) 2008 [name of plugin creator]
2
-
3
- Permission is hereby granted, free of charge, to any person obtaining
4
- a copy of this software and associated documentation files (the
5
- "Software"), to deal in the Software without restriction, including
6
- without limitation the rights to use, copy, modify, merge, publish,
7
- distribute, sublicense, and/or sell copies of the Software, and to
8
- permit persons to whom the Software is furnished to do so, subject to
9
- the following conditions:
10
-
11
- The above copyright notice and this permission notice shall be
12
- included in all copies or substantial portions of the Software.
13
-
14
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
15
- EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
16
- MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
17
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
18
- LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
19
- OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
20
- WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
data/README DELETED
@@ -1,13 +0,0 @@
1
- NexusParser
2
- ===========
3
-
4
- Introduction goes here.
5
-
6
-
7
- Example
8
- =======
9
-
10
- Example goes here.
11
-
12
-
13
- Copyright (c) 2008 Matt Yoder, released under the MIT license
data/VERSION DELETED
@@ -1 +0,0 @@
1
- 1.1.4
data/init.rb DELETED
@@ -1 +0,0 @@
1
- # Include hook code here