nexus_parser 1.1.3 → 1.2.0

metadata

@@ -1,83 +1,136 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: nexus_parser
-version: !ruby/object:Gem::Version 
-  prerelease: false
-  segments: 
-  - 1
-  - 1
-  - 3
-  version: 1.1.3
+version: !ruby/object:Gem::Version
+  version: 1.2.0
 platform: ruby
-authors: 
+authors:
 - mjy
-autorequire: 
-bindir: bin
+- kleintom
+autorequire:
+bindir: exe
 cert_chain: []
-
-date: 2010-04-09 00:00:00 -04:00
-default_executable: 
-dependencies: []
-
-description: "A full featured and extensible Nexus file parser in Ruby. "
-email: diapriid@gmail.com
+date: 2024-04-03 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2.0'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '13.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '13.0'
+- !ruby/object:Gem::Dependency
+  name: rdoc
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.6.2
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.6.2
+- !ruby/object:Gem::Dependency
+  name: byebug
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '11.1'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '11.1'
+- !ruby/object:Gem::Dependency
+  name: test-unit
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: A full featured and extensible Nexus file parser in Ruby.
+email:
+- diapriid@gmail.com
 executables: []
-
 extensions: []
-
-extra_rdoc_files: 
+extra_rdoc_files:
 - LICENSE
-- README
-- README.rdoc
-files: 
-- .document
-- .gitignore
+- README.md
+files:
+- ".document"
+- ".gitignore"
 - LICENSE
-- MIT-LICENSE
-- README
-- README.rdoc
+- README.md
 - Rakefile
-- VERSION
-- init.rb
 - install.rb
-- lib/lexer.rb
 - lib/nexus_parser.rb
-- lib/parser.rb
-- lib/tokens.rb
+- lib/nexus_parser/lexer.rb
+- lib/nexus_parser/parser.rb
+- lib/nexus_parser/tokens.rb
+- lib/nexus_parser/version.rb
 - nexus_parser.gemspec
 - tasks/nexus_parser_tasks.rake
 - test/MX_test_03.nex
 - test/test.nex
 - test/test_nexus_parser.rb
 - uninstall.rb
-has_rdoc: true
 homepage: http://github.com/mjy/nexus_parser
 licenses: []
-
-post_install_message: 
-rdoc_options: 
-- --charset=UTF-8
-require_paths: 
+metadata:
+  homepage_uri: http://github.com/mjy/nexus_parser
+  source_code_uri: http://github.com/mjy/nexus_parser
+post_install_message:
+rdoc_options:
+- "--charset=UTF-8"
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
-  requirements: 
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
   - - ">="
-    - !ruby/object:Gem::Version 
-      segments: 
-      - 0
-      version: "0"
-required_rubygems_version: !ruby/object:Gem::Requirement 
-  requirements: 
+    - !ruby/object:Gem::Version
+      version: 3.3.0
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
   - - ">="
-    - !ruby/object:Gem::Version 
-      segments: 
-      - 0
-      version: "0"
+    - !ruby/object:Gem::Version
+      version: '0'
 requirements: []
-
-rubyforge_project: 
-rubygems_version: 1.3.6
-signing_key: 
-specification_version: 3
+rubygems_version: 3.5.3
+signing_key:
+specification_version: 4
 summary: A Nexus file format (phylogenetic inference) parser in Ruby.
-test_files: 
+test_files:
 - test/test_nexus_parser.rb

data/MIT-LICENSE

@@ -1,20 +0,0 @@
-Copyright (c) 2008 [name of plugin creator]
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README

@@ -1,13 +0,0 @@
-NexusParser
-===========
-
-Introduction goes here.
-
-
-Example
-=======
-
-Example goes here.
-
-
-Copyright (c) 2008 Matt Yoder, released under the MIT license

data/VERSION

@@ -1 +0,0 @@
-1.1.3

data/init.rb

@@ -1 +0,0 @@
-# Include hook code here