neurohmmerapp 0.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.gitignore +24 -0
- data/Gemfile +4 -0
- data/Gemfile.lock +81 -0
- data/LICENSE.txt +661 -0
- data/README.md +96 -0
- data/Rakefile +21 -0
- data/bin/neurohmmerapp +166 -0
- data/config.ru +3 -0
- data/lib/neurohmmerapp/config.rb +87 -0
- data/lib/neurohmmerapp/exceptions.rb +77 -0
- data/lib/neurohmmerapp/logger.rb +24 -0
- data/lib/neurohmmerapp/neurohmmer.rb +158 -0
- data/lib/neurohmmerapp/routes.rb +79 -0
- data/lib/neurohmmerapp/server.rb +63 -0
- data/lib/neurohmmerapp/version.rb +3 -0
- data/lib/neurohmmerapp.rb +207 -0
- data/neurohmmerapp.gemspec +50 -0
- data/public/NeuroHmmer/loading.html +12 -0
- data/public/src/css/bootstrap1.min.css +7 -0
- data/public/src/css/custom.css +189 -0
- data/public/src/css/custom.min.css +1 -0
- data/public/src/css/font-awesome.min.css +4 -0
- data/public/src/js/bionode-seq.min.js +1 -0
- data/public/src/js/bootstrap.min.js +6 -0
- data/public/src/js/jquery.cookie.min.js +1 -0
- data/public/src/js/jquery.min.js +4 -0
- data/public/src/js/jquery.validate.min.js +4 -0
- data/public/src/js/neurohmmer.js +228 -0
- data/public/src/js/neurohmmer.min.js +1 -0
- data/public/web_files/css/nh_compiled_css.min.css +14 -0
- data/public/web_files/fonts/FontAwesome.otf +0 -0
- data/public/web_files/fonts/fontawesome-webfont.eot +0 -0
- data/public/web_files/fonts/fontawesome-webfont.svg +504 -0
- data/public/web_files/fonts/fontawesome-webfont.ttf +0 -0
- data/public/web_files/fonts/fontawesome-webfont.woff +0 -0
- data/public/web_files/js/nh_compiled_js.min.js +20 -0
- data/spec/empty_config.yml +0 -0
- data/spec/route_spec.rb +72 -0
- data/views/500.slim +5 -0
- data/views/index.slim +38 -0
- data/views/layout.slim +74 -0
- data/views/results.slim +9 -0
- metadata +281 -0
metadata
ADDED
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@@ -0,0 +1,281 @@
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--- !ruby/object:Gem::Specification
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name: neurohmmerapp
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version: !ruby/object:Gem::Version
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version: 0.0.1
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platform: ruby
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authors:
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- Ismail Moghul
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- Yannick Wurm
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2015-11-17 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.6'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.6'
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '10.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '10.3'
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- !ruby/object:Gem::Dependency
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name: rspec
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.8'
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- - ">="
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- !ruby/object:Gem::Version
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version: 2.8.0
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.8'
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- - ">="
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- !ruby/object:Gem::Version
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version: 2.8.0
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- !ruby/object:Gem::Dependency
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name: rack-test
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.6'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.6'
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- !ruby/object:Gem::Dependency
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name: capybara
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.4'
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- - ">="
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- !ruby/object:Gem::Version
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version: 2.4.4
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.4'
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- - ">="
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- !ruby/object:Gem::Version
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version: 2.4.4
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- !ruby/object:Gem::Dependency
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name: w3c_validators
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.1'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.1'
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- !ruby/object:Gem::Dependency
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name: neurohmmer
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.1'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.1'
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- !ruby/object:Gem::Dependency
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name: bio
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.4'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.4'
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- !ruby/object:Gem::Dependency
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name: sinatra
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.4'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.4'
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- !ruby/object:Gem::Dependency
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name: sinatra-cross_origin
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.3'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.3'
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- !ruby/object:Gem::Dependency
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name: slim
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.0'
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- !ruby/object:Gem::Dependency
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name: slop
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.6'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '3.6'
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description: A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
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email: y.wurm@qmul.ac.uk
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executables:
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- neurohmmerapp
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extensions: []
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extra_rdoc_files: []
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files:
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- ".gitignore"
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- Gemfile
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- Gemfile.lock
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- LICENSE.txt
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- README.md
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- Rakefile
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- bin/neurohmmerapp
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- config.ru
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- lib/neurohmmerapp.rb
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- lib/neurohmmerapp/config.rb
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- lib/neurohmmerapp/exceptions.rb
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- lib/neurohmmerapp/logger.rb
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- lib/neurohmmerapp/neurohmmer.rb
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- lib/neurohmmerapp/routes.rb
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- lib/neurohmmerapp/server.rb
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- lib/neurohmmerapp/version.rb
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- neurohmmerapp.gemspec
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- public/NeuroHmmer/loading.html
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- public/src/css/bootstrap1.min.css
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- public/src/css/custom.css
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- public/src/css/custom.min.css
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- public/src/css/font-awesome.min.css
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- public/src/js/bionode-seq.min.js
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- public/src/js/bootstrap.min.js
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- public/src/js/jquery.cookie.min.js
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- public/src/js/jquery.min.js
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- public/src/js/jquery.validate.min.js
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- public/src/js/neurohmmer.js
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- public/src/js/neurohmmer.min.js
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- public/web_files/css/nh_compiled_css.min.css
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- public/web_files/fonts/FontAwesome.otf
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- public/web_files/fonts/fontawesome-webfont.eot
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- public/web_files/fonts/fontawesome-webfont.svg
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- public/web_files/fonts/fontawesome-webfont.ttf
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- public/web_files/fonts/fontawesome-webfont.woff
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- public/web_files/js/nh_compiled_js.min.js
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- spec/empty_config.yml
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- spec/route_spec.rb
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- views/500.slim
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- views/index.slim
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- views/layout.slim
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- views/results.slim
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homepage: https://github.com/wurmlab/neurohmmerapp
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licenses:
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- AGPL
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metadata: {}
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post_install_message: |2+
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------------------------------------------------------------------------
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Thank you for Installing the NeuroHmmer App!
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To launch NeuroHmmerApp execute 'neurohmmerapp' from command line.
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$ neurohmmerapp [options]
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Visit https://github.com/wurmlab/neurohmmerapp for more information.
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------------------------------------------------------------------------
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rdoc_options: []
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 2.0.0
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required_rubygems_version: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.4.8
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signing_key:
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specification_version: 4
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summary: A Web App wrapper for NeuroHmmer.
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test_files:
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- spec/empty_config.yml
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- spec/route_spec.rb
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has_rdoc:
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