nera 0.1.1 → 0.1.2
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- data/History.txt +9 -0
- data/lib/nera/nera_cui.rb +5 -5
- data/lib/nera/nera_job_layer_controller.rb +4 -3
- data/lib/nera/nera_parameter_layer_controller.rb +10 -6
- data/lib/nera/nera_run_layer_controller.rb +16 -5
- data/lib/nera/nera_simulator_layer_controller.rb +8 -0
- data/lib/nera.rb +1 -1
- data/test/test_nera_job_layer_controller.rb +4 -1
- data/test/test_nera_parameter_layer_controller.rb +4 -1
- data/test/test_nera_run_layer_controller.rb +16 -7
- data/test/test_nera_simulator_layer_controller.rb +10 -1
- metadata +9 -5
data/History.txt
CHANGED
@@ -1,3 +1,12 @@
|
|
1
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+
== 0.1.2
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2
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+
* 1 major enhancement:
|
3
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+
* constructor of ParamLayerController now accepts String type simulator name.
|
4
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+
* constructor of RunLayerController now accepts String type simulator name.
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5
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+
* RunLayerController#cancel_jobs returns an array of cancelled job ids.
|
6
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+
* JobLayerController#cancel_jobs returns an array of cancelled job ids.
|
7
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+
* 2 bug fixes
|
8
|
+
* require statements of NERA::Simulator classes become sooner.
|
9
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+
|
1
10
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== 0.1.1
|
2
11
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* 1 major enhancement:
|
3
12
|
* 2 bug fixes
|
data/lib/nera/nera_cui.rb
CHANGED
@@ -88,7 +88,7 @@ HEADER
|
|
88
88
|
elsif names[selected] == "exit"
|
89
89
|
return :exit
|
90
90
|
else
|
91
|
-
@simulator_class =
|
91
|
+
@simulator_class = names[selected]
|
92
92
|
return :parameter_layer
|
93
93
|
end
|
94
94
|
end
|
@@ -98,14 +98,14 @@ HEADER
|
|
98
98
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|
99
99
|
plc = NERA::ParameterLayerController.new( @path_db_folder, @simulator_class)
|
100
100
|
unless plc
|
101
|
-
Dialog::message("Specified simulator does not exist #{@path_db_folder}/#{@simulator_class
|
101
|
+
Dialog::message("Specified simulator does not exist #{@path_db_folder}/#{@simulator_class}")
|
102
102
|
return :simulator_layer
|
103
103
|
end
|
104
104
|
|
105
105
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$stdout.puts <<"HEADER"
|
106
106
|
===============================================
|
107
107
|
--- in parameter layer ------------------------
|
108
|
-
#{@path_db_folder} / #{@simulator_class
|
108
|
+
#{@path_db_folder} / #{@simulator_class}
|
109
109
|
===============================================
|
110
110
|
HEADER
|
111
111
|
|
@@ -212,14 +212,14 @@ HEADER
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|
212
212
|
|
213
213
|
rlc = NERA::RunLayerController.new( @path_db_folder, @simulator_class, @parameter_id)
|
214
214
|
unless rlc
|
215
|
-
Dialog::message("Table #{@path_db_folder}/#{@simulator_class
|
215
|
+
Dialog::message("Table #{@path_db_folder}/#{@simulator_class}/#{@parameter_id} is not found.")
|
216
216
|
return :parameter_layer
|
217
217
|
end
|
218
218
|
|
219
219
|
$stdout.puts <<"HEADER"
|
220
220
|
===============================================
|
221
221
|
--- in run layer ------------------------------
|
222
|
-
#{@path_db_folder} / #{@simulator_class
|
222
|
+
#{@path_db_folder} / #{@simulator_class} / #{@parameter_id}
|
223
223
|
===============================================
|
224
224
|
HEADER
|
225
225
|
|
@@ -57,7 +57,7 @@ module NERA
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|
57
57
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raise ArgumentError, "each element of job_ids must be an Integer" unless x.is_a?(Integer)
|
58
58
|
end
|
59
59
|
|
60
|
-
|
60
|
+
destroyed_jobids = []
|
61
61
|
@job_records.transaction {
|
62
62
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job_ids.each do |jid|
|
63
63
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d = @job_records.destroy( jid)
|
@@ -75,11 +75,12 @@ module NERA
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|
75
75
|
YAML.dump( run_records.list_all, io)
|
76
76
|
io.flush
|
77
77
|
end
|
78
|
-
|
78
|
+
destroyed_jobids << jid
|
79
79
|
end
|
80
80
|
}
|
81
81
|
dump_in_yaml
|
82
|
-
|
82
|
+
destroyed_jobids = nil if destroyed_jobids.size == 0
|
83
|
+
return destroyed_jobids
|
83
84
|
end
|
84
85
|
|
85
86
|
def include_list
|
@@ -16,15 +16,19 @@ module NERA
|
|
16
16
|
# instance of NERA::ParameterRecords
|
17
17
|
@param_records
|
18
18
|
|
19
|
-
def initialize( path_db_folder,
|
19
|
+
def initialize( path_db_folder, sim_name)
|
20
20
|
raise ArgumentError unless path_db_folder.is_a?(String)
|
21
|
-
unless sim_class.is_a?(Class) and sim_class.superclass == NERA::Simulator
|
22
|
-
raise ArgumentError, "#{sim_class} is not a subclass of NERA::Simulator"
|
23
|
-
end
|
24
|
-
|
25
21
|
@db_folders = NERA::DbFolders.new( path_db_folder)
|
26
22
|
sim_records = NERA::SimulatorRecords.new( @db_folders.path_to_simulators_table)
|
27
|
-
|
23
|
+
found = sim_records.list.find do |rec|
|
24
|
+
rec[:name] == sim_name.to_s
|
25
|
+
end
|
26
|
+
raise "No such simulator." unless found
|
27
|
+
@sim_class = NERA::Simulator.inherited_simulators.find do |sim|
|
28
|
+
sim.to_s == sim_name.to_s
|
29
|
+
end
|
30
|
+
raise "No such simulator." unless @sim_class
|
31
|
+
|
28
32
|
p_tab_path = @db_folders.path_to_parameters_table( @sim_class)
|
29
33
|
@param_records = NERA::ParameterRecords.new( p_tab_path, @sim_class)
|
30
34
|
end
|
@@ -20,17 +20,25 @@ module NERA
|
|
20
20
|
# instance of NERA::RunRecords
|
21
21
|
@run_records
|
22
22
|
|
23
|
-
def initialize( path_db_folder,
|
23
|
+
def initialize( path_db_folder, sim_name, param_id)
|
24
24
|
raise ArgumentError unless path_db_folder.is_a?(String)
|
25
|
-
|
26
|
-
|
25
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+
|
26
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+
@db_folders = NERA::DbFolders.new( path_db_folder)
|
27
|
+
sim_records = NERA::SimulatorRecords.new( @db_folders.path_to_simulators_table)
|
28
|
+
found = sim_records.list.find do |rec|
|
29
|
+
rec[:name] == sim_name.to_s
|
27
30
|
end
|
31
|
+
raise "No such simulator : #{sim_name.to_s}" unless found
|
32
|
+
sim_class = NERA::Simulator.inherited_simulators.find do |sim|
|
33
|
+
sim.to_s == sim_name.to_s
|
34
|
+
end
|
35
|
+
raise "No such simulator : #{sim_name.to_s}" unless sim_class
|
28
36
|
|
29
|
-
@db_folders = NERA::DbFolders.new( path_db_folder)
|
30
37
|
@sim_instance = sim_class.new
|
31
38
|
@param_id = param_id
|
32
39
|
param_records = NERA::ParameterRecords.new( @db_folders.path_to_parameters_table( sim_class), sim_class)
|
33
40
|
found = param_records.find_by_id( @param_id)
|
41
|
+
raise "No such parameter : #{param_id}." unless found
|
34
42
|
@sim_instance.class::Parameters.each do |pa|
|
35
43
|
key = pa[0]
|
36
44
|
if found[key]
|
@@ -124,6 +132,7 @@ module NERA
|
|
124
132
|
end
|
125
133
|
|
126
134
|
job_recs = NERA::JobRecords.new( @db_folders.path_to_jobs_table)
|
135
|
+
destroyed_jobids = []
|
127
136
|
job_recs.transaction {
|
128
137
|
@run_records.transaction {
|
129
138
|
job_ids.each do |jid|
|
@@ -132,11 +141,13 @@ module NERA
|
|
132
141
|
a = @run_records.destroy_job_id( jid)
|
133
142
|
raise "must not happen" unless a
|
134
143
|
FileUtils.rm( @db_folders.path_to_job_script(jid) )
|
144
|
+
destroyed_jobids << jid
|
135
145
|
end
|
136
146
|
}
|
137
147
|
}
|
138
148
|
dump_in_yaml( job_recs)
|
139
|
-
|
149
|
+
destroyed_jobids = nil if destroyed_jobids.size == 0
|
150
|
+
return destroyed_jobids
|
140
151
|
end
|
141
152
|
|
142
153
|
def analysis_methods
|
@@ -35,6 +35,14 @@ module NERA
|
|
35
35
|
def path_to_sim_layer
|
36
36
|
@db_folders.path_to_simulator_layer
|
37
37
|
end
|
38
|
+
|
39
|
+
def get_class_by_name( sim_name)
|
40
|
+
raise ArgumentError unless sim_name.is_a?(String)
|
41
|
+
found = NERA::Simulator.inherited_simulators.find do |sim|
|
42
|
+
sim.to_s == sim_name
|
43
|
+
end
|
44
|
+
return found
|
45
|
+
end
|
38
46
|
|
39
47
|
private
|
40
48
|
def register_a_simulator( sim_klass)
|
data/lib/nera.rb
CHANGED
@@ -56,7 +56,7 @@ class TC_NERA_JOB_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
56
56
|
}
|
57
57
|
|
58
58
|
f = @jlc.cancel_jobs( [1,2] )
|
59
|
-
|
59
|
+
assert_equal([1,2], f)
|
60
60
|
h, l = @jlc.not_finished_list_in_csv
|
61
61
|
assert_equal( 1, l.size)
|
62
62
|
assert_equal( 3, l[0].split(',')[0].to_i)
|
@@ -71,6 +71,9 @@ class TC_NERA_JOB_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
71
71
|
|
72
72
|
f = @jlc.cancel_jobs( [1000] )
|
73
73
|
assert_nil( f)
|
74
|
+
|
75
|
+
f = @jlc.cancel_jobs( [2,3] )
|
76
|
+
assert_equal( [3], f)
|
74
77
|
end
|
75
78
|
|
76
79
|
def test_include_list
|
@@ -11,7 +11,7 @@ class TC_NERA_PARAM_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
11
11
|
NERA::DbFolders.create_db( @db_folder)
|
12
12
|
@dbf = NERA::DbFolders.new( @db_folder)
|
13
13
|
@slc = NERA::SimulatorLayerController.new( @db_folder)
|
14
|
-
@plc = NERA::ParameterLayerController.new( @db_folder, Ising)
|
14
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+
@plc = NERA::ParameterLayerController.new( @db_folder, "Ising")
|
15
15
|
end
|
16
16
|
|
17
17
|
def teardown
|
@@ -29,6 +29,9 @@ class TC_NERA_PARAM_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
29
29
|
assert_raise( ArgumentError) {
|
30
30
|
x = NERA::ParameterLayerController.new( @dbf, "1")
|
31
31
|
}
|
32
|
+
assert_raise( RuntimeError) {
|
33
|
+
x = NERA::ParameterLayerController.new( @db_folder, "Unknown")
|
34
|
+
}
|
32
35
|
end
|
33
36
|
|
34
37
|
def test_parameters_list_in_csv
|
@@ -11,9 +11,9 @@ class TC_NERA_RUN_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
11
11
|
NERA::DbFolders.create_db( @db_folder)
|
12
12
|
@dbf = NERA::DbFolders.new( @db_folder)
|
13
13
|
@slc = NERA::SimulatorLayerController.new( @db_folder)
|
14
|
-
@plc = NERA::ParameterLayerController.new( @db_folder, Ising)
|
14
|
+
@plc = NERA::ParameterLayerController.new( @db_folder, "Ising")
|
15
15
|
pid = @plc.create_a_new_parameter_set({:L => 32, :K => 0.01, :tmax => 1})
|
16
|
-
@rlc = NERA::RunLayerController.new( @db_folder, Ising, pid)
|
16
|
+
@rlc = NERA::RunLayerController.new( @db_folder, "Ising", pid)
|
17
17
|
end
|
18
18
|
|
19
19
|
def teardown
|
@@ -28,12 +28,18 @@ class TC_NERA_RUN_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
28
28
|
assert_raise( ArgumentError) {
|
29
29
|
NERA::RunLayerController.new( Temp,1, 1)
|
30
30
|
}
|
31
|
-
assert_raise(
|
31
|
+
assert_raise( RuntimeError) {
|
32
32
|
x = NERA::RunLayerController.new( @db_folder, 1, "1")
|
33
33
|
}
|
34
|
-
assert_raise(
|
34
|
+
assert_raise( RuntimeError) {
|
35
35
|
x = NERA::RunLayerController.new( @db_folder, "1", 1)
|
36
36
|
}
|
37
|
+
assert_raise( RuntimeError) {
|
38
|
+
x = NERA::RunLayerController.new( @db_folder, "Unknown", 1)
|
39
|
+
}
|
40
|
+
assert_raise( RuntimeError) {
|
41
|
+
x = NERA::RunLayerController.new( @db_folder, "Ising", 2)
|
42
|
+
}
|
37
43
|
end
|
38
44
|
|
39
45
|
def test_path_to_run_layer
|
@@ -133,7 +139,8 @@ class TC_NERA_RUN_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
133
139
|
def test_cancel_jobs
|
134
140
|
jids = @rlc.create_jobs(3)
|
135
141
|
p jids
|
136
|
-
@rlc.cancel_jobs( jids)
|
142
|
+
canceled = @rlc.cancel_jobs( jids)
|
143
|
+
assert_equal( jids, canceled)
|
137
144
|
h, l = @rlc.all_runs_list_in_csv
|
138
145
|
assert_equal( 0, l.size)
|
139
146
|
|
@@ -147,8 +154,10 @@ class TC_NERA_RUN_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
147
154
|
|
148
155
|
# -----------------------------
|
149
156
|
jids = @rlc.create_jobs(3)
|
150
|
-
jids.delete(4)
|
151
|
-
@rlc.cancel_jobs( jids)
|
157
|
+
canceled = jids.delete(4)
|
158
|
+
canceled = @rlc.cancel_jobs( jids)
|
159
|
+
assert_equal( [5,6], canceled)
|
160
|
+
assert_nil( @rlc.cancel_jobs( [5,6]) )
|
152
161
|
h, l = @rlc.all_runs_list_in_csv
|
153
162
|
assert_equal( 1, l.size)
|
154
163
|
l = NERA::JobRecords.new( @dbf.path_to_jobs_table).list_all
|
@@ -49,6 +49,15 @@ class TC_NERA_SIM_LAYER_CONTROLLER < Test::Unit::TestCase
|
|
49
49
|
p = @slc.path_to_sim_layer
|
50
50
|
assert_equal( @db_folder+'/', p)
|
51
51
|
end
|
52
|
-
|
52
|
+
|
53
|
+
def test_get_class_by_name
|
54
|
+
found = @slc.get_class_by_name('Ising')
|
55
|
+
assert_equal( found, Ising)
|
56
|
+
assert_raise(ArgumentError) {
|
57
|
+
found = @slc.get_class_by_name(1)
|
58
|
+
}
|
59
|
+
found = @slc.get_class_by_name('Unknown_simulator')
|
60
|
+
assert_nil(found)
|
61
|
+
end
|
53
62
|
|
54
63
|
end
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: nera
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.2
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Yohsuke Murase
|
@@ -9,7 +9,7 @@ autorequire:
|
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
11
|
|
12
|
-
date: 2009-05-
|
12
|
+
date: 2009-05-18 00:00:00 +09:00
|
13
13
|
default_executable:
|
14
14
|
dependencies:
|
15
15
|
- !ruby/object:Gem::Dependency
|
@@ -52,7 +52,9 @@ dependencies:
|
|
52
52
|
- !ruby/object:Gem::Version
|
53
53
|
version: 1.8.0
|
54
54
|
version:
|
55
|
-
description:
|
55
|
+
description: |-
|
56
|
+
This is an application which helps you to manage a database for the Monte Carlo simulations.
|
57
|
+
For the dtailed usage, see http://nera.rubyforge.com
|
56
58
|
email:
|
57
59
|
- murase@serow.t.u-tokyo.ac.jp
|
58
60
|
executables:
|
@@ -112,6 +114,8 @@ files:
|
|
112
114
|
- test/test_nera_simulator_records.rb
|
113
115
|
has_rdoc: true
|
114
116
|
homepage: http://nera.rubyforge.com
|
117
|
+
licenses: []
|
118
|
+
|
115
119
|
post_install_message:
|
116
120
|
rdoc_options:
|
117
121
|
- --main
|
@@ -133,9 +137,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
133
137
|
requirements: []
|
134
138
|
|
135
139
|
rubyforge_project: nera
|
136
|
-
rubygems_version: 1.
|
140
|
+
rubygems_version: 1.3.3
|
137
141
|
signing_key:
|
138
|
-
specification_version:
|
142
|
+
specification_version: 3
|
139
143
|
summary: This is an application which helps you to manage a database for the Monte Carlo simulations
|
140
144
|
test_files:
|
141
145
|
- test/test_helper.rb
|