needleman_wunsch_aligner 1.1.0 → 1.1.1

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data/CHANGELOG.md

@@ -1,4 +1,8 @@
-### 1.1.0
+### 1.1.1
+
+* Added :options argument to initializer to get access to external attrs when computing scores.
+
+## 1.1.0
 
 * Changed #compute_score method params: Added row and column index for performance optimizations where I may not want to compute scores for the entire matrix, but only for a narrow band around the diagonal. The width of the band is determined by the maximum expected alignment offset.
 

data/lib/needleman_wunsch_aligner.rb

@@ -13,9 +13,16 @@ class NeedlemanWunschAligner
 
   # @param left_seq [Array<Object>] sequence drawn at left of matrix
   # @param top_seq [Array<Object>] sequence drawn at top of matrix
-  def initialize(left_seq, top_seq)
+  # @param options [Hash, optional] can be used to provide state to the aligner
+  #                which can be used, e.g., when computing the score.
+  #                One example use case is to pass in the maximum expected
+  #                offset, and then not compute the entire score matrix, but
+  #                only a band around the diagonal, wide enough to handle the
+  #                maximum expected offset.
+  def initialize(left_seq, top_seq, options={})
     @left_seq = left_seq
     @top_seq = top_seq
+    @options = options
   end
 
   # Returns two arrays that represent the optimal alignment.

data/lib/needleman_wunsch_aligner/version.rb

@@ -1,3 +1,3 @@
 class NeedlemanWunschAligner
-  VERSION = "1.1.0"
+  VERSION = "1.1.1"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: needleman_wunsch_aligner
 version: !ruby/object:Gem::Version
-  version: 1.1.0
+  version: 1.1.1
 platform: ruby
 authors:
 - Jo Hund
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-08-30 00:00:00.000000000 Z
+date: 2016-08-31 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler