needleman_wunsch_aligner 1.1.0 → 1.1.1
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- checksums.yaml +4 -4
- data/CHANGELOG.md +5 -1
- data/lib/needleman_wunsch_aligner.rb +8 -1
- data/lib/needleman_wunsch_aligner/version.rb +1 -1
- metadata +2 -2
checksums.yaml
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data/CHANGELOG.md
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### 1.1.
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### 1.1.1
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* Added :options argument to initializer to get access to external attrs when computing scores.
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## 1.1.0
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* Changed #compute_score method params: Added row and column index for performance optimizations where I may not want to compute scores for the entire matrix, but only for a narrow band around the diagonal. The width of the band is determined by the maximum expected alignment offset.
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@@ -13,9 +13,16 @@ class NeedlemanWunschAligner
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# @param left_seq [Array<Object>] sequence drawn at left of matrix
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# @param top_seq [Array<Object>] sequence drawn at top of matrix
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# @param options [Hash, optional] can be used to provide state to the aligner
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# which can be used, e.g., when computing the score.
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# One example use case is to pass in the maximum expected
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# offset, and then not compute the entire score matrix, but
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# only a band around the diagonal, wide enough to handle the
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# maximum expected offset.
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def initialize(left_seq, top_seq, options={})
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@left_seq = left_seq
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@top_seq = top_seq
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@options = options
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end
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# Returns two arrays that represent the optimal alignment.
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metadata
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--- !ruby/object:Gem::Specification
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name: needleman_wunsch_aligner
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version: !ruby/object:Gem::Version
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version: 1.1.
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version: 1.1.1
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platform: ruby
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authors:
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- Jo Hund
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2016-08-
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date: 2016-08-31 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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