ncs_mdes_warehouse 0.12.0 → 0.13.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/CHANGELOG.md +23 -0
- data/lib/ncs_navigator/warehouse.rb +2 -0
- data/lib/ncs_navigator/warehouse/cli.rb +10 -2
- data/lib/ncs_navigator/warehouse/configuration.rb +80 -0
- data/lib/ncs_navigator/warehouse/configuration/file_evaluator.rb +1 -1
- data/lib/ncs_navigator/warehouse/contents.rb +77 -0
- data/lib/ncs_navigator/warehouse/filters.rb +19 -0
- data/lib/ncs_navigator/warehouse/filters/add_id_prefix_filter.rb +32 -0
- data/lib/ncs_navigator/warehouse/{transformers → filters}/apply_global_values_filter.rb +1 -1
- data/lib/ncs_navigator/warehouse/{transformers → filters}/coded_as_missing_filter.rb +1 -1
- data/lib/ncs_navigator/warehouse/filters/composite_filter.rb +77 -0
- data/lib/ncs_navigator/warehouse/{transformers → filters}/no_blank_foreign_keys_filter.rb +1 -1
- data/lib/ncs_navigator/warehouse/{transformers → filters}/no_ssu_outreach_all_ssus_filter.rb +1 -1
- data/lib/ncs_navigator/warehouse/{transformers → filters}/no_ssu_outreach_placeholder_filter.rb +1 -1
- data/lib/ncs_navigator/warehouse/filters/record_id_changing_filter_support.rb +71 -0
- data/lib/ncs_navigator/warehouse/filters/remove_id_prefix_filter.rb +32 -0
- data/lib/ncs_navigator/warehouse/transformers.rb +0 -6
- data/lib/ncs_navigator/warehouse/transformers/database.rb +14 -8
- data/lib/ncs_navigator/warehouse/transformers/enum_transformer.rb +5 -3
- data/lib/ncs_navigator/warehouse/version.rb +1 -1
- data/lib/ncs_navigator/warehouse/xml_emitter.rb +101 -50
- data/sample_configuration.rb +12 -0
- data/spec/ncs_navigator/warehouse/configuration_spec.rb +102 -0
- data/spec/ncs_navigator/warehouse/contents_spec.rb +166 -0
- data/spec/ncs_navigator/warehouse/filters/add_id_prefix_filter_spec.rb +82 -0
- data/spec/ncs_navigator/warehouse/{transformers → filters}/apply_global_values_filter_spec.rb +1 -1
- data/spec/ncs_navigator/warehouse/{transformers → filters}/coded_as_missing_filter_spec.rb +1 -1
- data/spec/ncs_navigator/warehouse/{transformers/filters_spec.rb → filters/composite_filter_spec.rb} +8 -8
- data/spec/ncs_navigator/warehouse/{transformers → filters}/no_blank_foreign_keys_filter_spec.rb +1 -1
- data/spec/ncs_navigator/warehouse/{transformers → filters}/no_ssu_outreach_all_ssus_filter_spec.rb +1 -1
- data/spec/ncs_navigator/warehouse/{transformers → filters}/no_ssu_outreach_placeholder_filter_spec.rb +1 -1
- data/spec/ncs_navigator/warehouse/filters/remove_id_prefix_filter_spec.rb +95 -0
- data/spec/ncs_navigator/warehouse/xml_emitter_spec.rb +94 -0
- metadata +33 -22
- data/lib/ncs_navigator/warehouse/transformers/filters.rb +0 -66
    
        metadata
    CHANGED
    
    | @@ -1,7 +1,7 @@ | |
| 1 1 | 
             
            --- !ruby/object:Gem::Specification
         | 
| 2 2 | 
             
            name: ncs_mdes_warehouse
         | 
| 3 3 | 
             
            version: !ruby/object:Gem::Version
         | 
| 4 | 
            -
              version: 0. | 
| 4 | 
            +
              version: 0.13.0
         | 
| 5 5 | 
             
              prerelease: 
         | 
| 6 6 | 
             
            platform: ruby
         | 
| 7 7 | 
             
            authors:
         | 
| @@ -9,7 +9,7 @@ authors: | |
| 9 9 | 
             
            autorequire: 
         | 
| 10 10 | 
             
            bindir: bin
         | 
| 11 11 | 
             
            cert_chain: []
         | 
| 12 | 
            -
            date: 2013- | 
| 12 | 
            +
            date: 2013-04-30 00:00:00.000000000 Z
         | 
| 13 13 | 
             
            dependencies:
         | 
| 14 14 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 15 15 | 
             
              name: ncs_mdes
         | 
| @@ -2890,9 +2890,20 @@ files: | |
| 2890 2890 | 
             
            - lib/ncs_navigator/warehouse/comparator.rb
         | 
| 2891 2891 | 
             
            - lib/ncs_navigator/warehouse/configuration.rb
         | 
| 2892 2892 | 
             
            - lib/ncs_navigator/warehouse/configuration/file_evaluator.rb
         | 
| 2893 | 
            +
            - lib/ncs_navigator/warehouse/contents.rb
         | 
| 2893 2894 | 
             
            - lib/ncs_navigator/warehouse/data_mapper.rb
         | 
| 2894 2895 | 
             
            - lib/ncs_navigator/warehouse/data_mapper_patches.rb
         | 
| 2895 2896 | 
             
            - lib/ncs_navigator/warehouse/database_initializer.rb
         | 
| 2897 | 
            +
            - lib/ncs_navigator/warehouse/filters.rb
         | 
| 2898 | 
            +
            - lib/ncs_navigator/warehouse/filters/add_id_prefix_filter.rb
         | 
| 2899 | 
            +
            - lib/ncs_navigator/warehouse/filters/apply_global_values_filter.rb
         | 
| 2900 | 
            +
            - lib/ncs_navigator/warehouse/filters/coded_as_missing_filter.rb
         | 
| 2901 | 
            +
            - lib/ncs_navigator/warehouse/filters/composite_filter.rb
         | 
| 2902 | 
            +
            - lib/ncs_navigator/warehouse/filters/no_blank_foreign_keys_filter.rb
         | 
| 2903 | 
            +
            - lib/ncs_navigator/warehouse/filters/no_ssu_outreach_all_ssus_filter.rb
         | 
| 2904 | 
            +
            - lib/ncs_navigator/warehouse/filters/no_ssu_outreach_placeholder_filter.rb
         | 
| 2905 | 
            +
            - lib/ncs_navigator/warehouse/filters/record_id_changing_filter_support.rb
         | 
| 2906 | 
            +
            - lib/ncs_navigator/warehouse/filters/remove_id_prefix_filter.rb
         | 
| 2896 2907 | 
             
            - lib/ncs_navigator/warehouse/hooks.rb
         | 
| 2897 2908 | 
             
            - lib/ncs_navigator/warehouse/hooks/etl_status_email.rb
         | 
| 2898 2909 | 
             
            - lib/ncs_navigator/warehouse/mailer_templates/etl_status_email/failure_message.text.erb
         | 
| @@ -2909,21 +2920,15 @@ files: | |
| 2909 2920 | 
             
            - lib/ncs_navigator/warehouse/transform_load.rb
         | 
| 2910 2921 | 
             
            - lib/ncs_navigator/warehouse/transform_status.rb
         | 
| 2911 2922 | 
             
            - lib/ncs_navigator/warehouse/transformers.rb
         | 
| 2912 | 
            -
            - lib/ncs_navigator/warehouse/transformers/apply_global_values_filter.rb
         | 
| 2913 | 
            -
            - lib/ncs_navigator/warehouse/transformers/coded_as_missing_filter.rb
         | 
| 2914 2923 | 
             
            - lib/ncs_navigator/warehouse/transformers/database.rb
         | 
| 2915 2924 | 
             
            - lib/ncs_navigator/warehouse/transformers/enum_transformer.rb
         | 
| 2916 2925 | 
             
            - lib/ncs_navigator/warehouse/transformers/event_start_from_contact_transformer.rb
         | 
| 2917 | 
            -
            - lib/ncs_navigator/warehouse/transformers/filters.rb
         | 
| 2918 2926 | 
             
            - lib/ncs_navigator/warehouse/transformers/foreign_key_index.rb
         | 
| 2919 2927 | 
             
            - lib/ncs_navigator/warehouse/transformers/foreign_key_index/database_key_provider.rb
         | 
| 2920 2928 | 
             
            - lib/ncs_navigator/warehouse/transformers/foreign_key_index/static_key_provider.rb
         | 
| 2921 2929 | 
             
            - lib/ncs_navigator/warehouse/transformers/mdes_csv.rb
         | 
| 2922 2930 | 
             
            - lib/ncs_navigator/warehouse/transformers/mdes_csv/multiple_table_reader.rb
         | 
| 2923 2931 | 
             
            - lib/ncs_navigator/warehouse/transformers/mdes_csv/table_reader.rb
         | 
| 2924 | 
            -
            - lib/ncs_navigator/warehouse/transformers/no_blank_foreign_keys_filter.rb
         | 
| 2925 | 
            -
            - lib/ncs_navigator/warehouse/transformers/no_ssu_outreach_all_ssus_filter.rb
         | 
| 2926 | 
            -
            - lib/ncs_navigator/warehouse/transformers/no_ssu_outreach_placeholder_filter.rb
         | 
| 2927 2932 | 
             
            - lib/ncs_navigator/warehouse/transformers/sampling_units.rb
         | 
| 2928 2933 | 
             
            - lib/ncs_navigator/warehouse/transformers/sql/sql_statements.treetop
         | 
| 2929 2934 | 
             
            - lib/ncs_navigator/warehouse/transformers/sql_transformer.rb
         | 
| @@ -2941,8 +2946,17 @@ files: | |
| 2941 2946 | 
             
            - spec/global_state_helper.rb
         | 
| 2942 2947 | 
             
            - spec/navigator.ini
         | 
| 2943 2948 | 
             
            - spec/ncs_navigator/warehouse/configuration_spec.rb
         | 
| 2949 | 
            +
            - spec/ncs_navigator/warehouse/contents_spec.rb
         | 
| 2944 2950 | 
             
            - spec/ncs_navigator/warehouse/data_mapper_spec.rb
         | 
| 2945 2951 | 
             
            - spec/ncs_navigator/warehouse/database_initializer_spec.rb
         | 
| 2952 | 
            +
            - spec/ncs_navigator/warehouse/filters/add_id_prefix_filter_spec.rb
         | 
| 2953 | 
            +
            - spec/ncs_navigator/warehouse/filters/apply_global_values_filter_spec.rb
         | 
| 2954 | 
            +
            - spec/ncs_navigator/warehouse/filters/coded_as_missing_filter_spec.rb
         | 
| 2955 | 
            +
            - spec/ncs_navigator/warehouse/filters/composite_filter_spec.rb
         | 
| 2956 | 
            +
            - spec/ncs_navigator/warehouse/filters/no_blank_foreign_keys_filter_spec.rb
         | 
| 2957 | 
            +
            - spec/ncs_navigator/warehouse/filters/no_ssu_outreach_all_ssus_filter_spec.rb
         | 
| 2958 | 
            +
            - spec/ncs_navigator/warehouse/filters/no_ssu_outreach_placeholder_filter_spec.rb
         | 
| 2959 | 
            +
            - spec/ncs_navigator/warehouse/filters/remove_id_prefix_filter_spec.rb
         | 
| 2946 2960 | 
             
            - spec/ncs_navigator/warehouse/hooks/etl_status_email_spec.rb
         | 
| 2947 2961 | 
             
            - spec/ncs_navigator/warehouse/models/mdes_model_spec.rb
         | 
| 2948 2962 | 
             
            - spec/ncs_navigator/warehouse/models_spec.rb
         | 
| @@ -2951,20 +2965,14 @@ files: | |
| 2951 2965 | 
             
            - spec/ncs_navigator/warehouse/table_modeler_spec.rb
         | 
| 2952 2966 | 
             
            - spec/ncs_navigator/warehouse/transform_load_spec.rb
         | 
| 2953 2967 | 
             
            - spec/ncs_navigator/warehouse/transform_status_spec.rb
         | 
| 2954 | 
            -
            - spec/ncs_navigator/warehouse/transformers/apply_global_values_filter_spec.rb
         | 
| 2955 | 
            -
            - spec/ncs_navigator/warehouse/transformers/coded_as_missing_filter_spec.rb
         | 
| 2956 2968 | 
             
            - spec/ncs_navigator/warehouse/transformers/database_spec.rb
         | 
| 2957 2969 | 
             
            - spec/ncs_navigator/warehouse/transformers/enum_transformer_spec.rb
         | 
| 2958 2970 | 
             
            - spec/ncs_navigator/warehouse/transformers/event_start_from_contact_transformer_spec.rb
         | 
| 2959 | 
            -
            - spec/ncs_navigator/warehouse/transformers/filters_spec.rb
         | 
| 2960 2971 | 
             
            - spec/ncs_navigator/warehouse/transformers/foreign_key_index/database_key_provider_spec.rb
         | 
| 2961 2972 | 
             
            - spec/ncs_navigator/warehouse/transformers/foreign_key_index_spec.rb
         | 
| 2962 2973 | 
             
            - spec/ncs_navigator/warehouse/transformers/mdes_csv/multiple_table_reader_spec.rb
         | 
| 2963 2974 | 
             
            - spec/ncs_navigator/warehouse/transformers/mdes_csv/table_reader_spec.rb
         | 
| 2964 2975 | 
             
            - spec/ncs_navigator/warehouse/transformers/mdes_csv_spec.rb
         | 
| 2965 | 
            -
            - spec/ncs_navigator/warehouse/transformers/no_blank_foreign_keys_filter_spec.rb
         | 
| 2966 | 
            -
            - spec/ncs_navigator/warehouse/transformers/no_ssu_outreach_all_ssus_filter_spec.rb
         | 
| 2967 | 
            -
            - spec/ncs_navigator/warehouse/transformers/no_ssu_outreach_placeholder_filter_spec.rb
         | 
| 2968 2976 | 
             
            - spec/ncs_navigator/warehouse/transformers/sampling_units_spec.rb
         | 
| 2969 2977 | 
             
            - spec/ncs_navigator/warehouse/transformers/sql_transformer_spec.rb
         | 
| 2970 2978 | 
             
            - spec/ncs_navigator/warehouse/transformers/subprocess_transformer_spec.rb
         | 
| @@ -2992,7 +3000,7 @@ required_ruby_version: !ruby/object:Gem::Requirement | |
| 2992 3000 | 
             
                  version: '0'
         | 
| 2993 3001 | 
             
                  segments:
         | 
| 2994 3002 | 
             
                  - 0
         | 
| 2995 | 
            -
                  hash:  | 
| 3003 | 
            +
                  hash: 2914256523883206240
         | 
| 2996 3004 | 
             
            required_rubygems_version: !ruby/object:Gem::Requirement
         | 
| 2997 3005 | 
             
              none: false
         | 
| 2998 3006 | 
             
              requirements:
         | 
| @@ -3001,7 +3009,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement | |
| 3001 3009 | 
             
                  version: '0'
         | 
| 3002 3010 | 
             
                  segments:
         | 
| 3003 3011 | 
             
                  - 0
         | 
| 3004 | 
            -
                  hash:  | 
| 3012 | 
            +
                  hash: 2914256523883206240
         | 
| 3005 3013 | 
             
            requirements: []
         | 
| 3006 3014 | 
             
            rubyforge_project: 
         | 
| 3007 3015 | 
             
            rubygems_version: 1.8.25
         | 
| @@ -3016,8 +3024,17 @@ test_files: | |
| 3016 3024 | 
             
            - spec/global_state_helper.rb
         | 
| 3017 3025 | 
             
            - spec/navigator.ini
         | 
| 3018 3026 | 
             
            - spec/ncs_navigator/warehouse/configuration_spec.rb
         | 
| 3027 | 
            +
            - spec/ncs_navigator/warehouse/contents_spec.rb
         | 
| 3019 3028 | 
             
            - spec/ncs_navigator/warehouse/data_mapper_spec.rb
         | 
| 3020 3029 | 
             
            - spec/ncs_navigator/warehouse/database_initializer_spec.rb
         | 
| 3030 | 
            +
            - spec/ncs_navigator/warehouse/filters/add_id_prefix_filter_spec.rb
         | 
| 3031 | 
            +
            - spec/ncs_navigator/warehouse/filters/apply_global_values_filter_spec.rb
         | 
| 3032 | 
            +
            - spec/ncs_navigator/warehouse/filters/coded_as_missing_filter_spec.rb
         | 
| 3033 | 
            +
            - spec/ncs_navigator/warehouse/filters/composite_filter_spec.rb
         | 
| 3034 | 
            +
            - spec/ncs_navigator/warehouse/filters/no_blank_foreign_keys_filter_spec.rb
         | 
| 3035 | 
            +
            - spec/ncs_navigator/warehouse/filters/no_ssu_outreach_all_ssus_filter_spec.rb
         | 
| 3036 | 
            +
            - spec/ncs_navigator/warehouse/filters/no_ssu_outreach_placeholder_filter_spec.rb
         | 
| 3037 | 
            +
            - spec/ncs_navigator/warehouse/filters/remove_id_prefix_filter_spec.rb
         | 
| 3021 3038 | 
             
            - spec/ncs_navigator/warehouse/hooks/etl_status_email_spec.rb
         | 
| 3022 3039 | 
             
            - spec/ncs_navigator/warehouse/models/mdes_model_spec.rb
         | 
| 3023 3040 | 
             
            - spec/ncs_navigator/warehouse/models_spec.rb
         | 
| @@ -3026,20 +3043,14 @@ test_files: | |
| 3026 3043 | 
             
            - spec/ncs_navigator/warehouse/table_modeler_spec.rb
         | 
| 3027 3044 | 
             
            - spec/ncs_navigator/warehouse/transform_load_spec.rb
         | 
| 3028 3045 | 
             
            - spec/ncs_navigator/warehouse/transform_status_spec.rb
         | 
| 3029 | 
            -
            - spec/ncs_navigator/warehouse/transformers/apply_global_values_filter_spec.rb
         | 
| 3030 | 
            -
            - spec/ncs_navigator/warehouse/transformers/coded_as_missing_filter_spec.rb
         | 
| 3031 3046 | 
             
            - spec/ncs_navigator/warehouse/transformers/database_spec.rb
         | 
| 3032 3047 | 
             
            - spec/ncs_navigator/warehouse/transformers/enum_transformer_spec.rb
         | 
| 3033 3048 | 
             
            - spec/ncs_navigator/warehouse/transformers/event_start_from_contact_transformer_spec.rb
         | 
| 3034 | 
            -
            - spec/ncs_navigator/warehouse/transformers/filters_spec.rb
         | 
| 3035 3049 | 
             
            - spec/ncs_navigator/warehouse/transformers/foreign_key_index/database_key_provider_spec.rb
         | 
| 3036 3050 | 
             
            - spec/ncs_navigator/warehouse/transformers/foreign_key_index_spec.rb
         | 
| 3037 3051 | 
             
            - spec/ncs_navigator/warehouse/transformers/mdes_csv/multiple_table_reader_spec.rb
         | 
| 3038 3052 | 
             
            - spec/ncs_navigator/warehouse/transformers/mdes_csv/table_reader_spec.rb
         | 
| 3039 3053 | 
             
            - spec/ncs_navigator/warehouse/transformers/mdes_csv_spec.rb
         | 
| 3040 | 
            -
            - spec/ncs_navigator/warehouse/transformers/no_blank_foreign_keys_filter_spec.rb
         | 
| 3041 | 
            -
            - spec/ncs_navigator/warehouse/transformers/no_ssu_outreach_all_ssus_filter_spec.rb
         | 
| 3042 | 
            -
            - spec/ncs_navigator/warehouse/transformers/no_ssu_outreach_placeholder_filter_spec.rb
         | 
| 3043 3054 | 
             
            - spec/ncs_navigator/warehouse/transformers/sampling_units_spec.rb
         | 
| 3044 3055 | 
             
            - spec/ncs_navigator/warehouse/transformers/sql_transformer_spec.rb
         | 
| 3045 3056 | 
             
            - spec/ncs_navigator/warehouse/transformers/subprocess_transformer_spec.rb
         | 
| @@ -1,66 +0,0 @@ | |
| 1 | 
            -
            require 'forwardable'
         | 
| 2 | 
            -
             | 
| 3 | 
            -
            module NcsNavigator::Warehouse::Transformers
         | 
| 4 | 
            -
              ##
         | 
| 5 | 
            -
              # Encapsulates an ordered list of filters that can be applied to a
         | 
| 6 | 
            -
              # record coming out of an enumeration in {EnumTransformer}.
         | 
| 7 | 
            -
              #
         | 
| 8 | 
            -
              # Each filter is an object with an `call` method. The `call`
         | 
| 9 | 
            -
              # method takes an array of zero or more records as input and returns
         | 
| 10 | 
            -
              # an array of zero or more records. The input and output arrays may
         | 
| 11 | 
            -
              # be the same or different. A filter may add, remove, or mutate
         | 
| 12 | 
            -
              # records (or all three).
         | 
| 13 | 
            -
              #
         | 
| 14 | 
            -
              # A filter will be called multiple times for a single transform run,
         | 
| 15 | 
            -
              # but it will never see the same record twice. To put it another
         | 
| 16 | 
            -
              # way, the first filter will be invoked exactly once per record
         | 
| 17 | 
            -
              # yielded from an {EnumTransformer}'s enumeration. Subsequent
         | 
| 18 | 
            -
              # filters are invoked on return value from the previous filter.
         | 
| 19 | 
            -
              #
         | 
| 20 | 
            -
              # Depending on the filter order, a particular filter may never see
         | 
| 21 | 
            -
              # some of the eventually transformed records. This will happen if
         | 
| 22 | 
            -
              # records are created by a filter lower in the filter chain.
         | 
| 23 | 
            -
              class Filters
         | 
| 24 | 
            -
                include Enumerable
         | 
| 25 | 
            -
                extend Forwardable
         | 
| 26 | 
            -
             | 
| 27 | 
            -
                def_delegators :@filters, :each
         | 
| 28 | 
            -
             | 
| 29 | 
            -
                attr_accessor :filters
         | 
| 30 | 
            -
             | 
| 31 | 
            -
                def initialize(filter_objects)
         | 
| 32 | 
            -
                  check_filters(filter_objects)
         | 
| 33 | 
            -
             | 
| 34 | 
            -
                  @filters = filter_objects
         | 
| 35 | 
            -
                end
         | 
| 36 | 
            -
             | 
| 37 | 
            -
                ##
         | 
| 38 | 
            -
                # @param records [Array] zero or more records to filter.
         | 
| 39 | 
            -
                # @return [Array] the filtered records.
         | 
| 40 | 
            -
                def call(records)
         | 
| 41 | 
            -
                  filters.inject(ensure_array(records)) { |result, filter| ensure_array(filter.call(result)) }
         | 
| 42 | 
            -
                end
         | 
| 43 | 
            -
             | 
| 44 | 
            -
                private
         | 
| 45 | 
            -
             | 
| 46 | 
            -
                def check_filters(candidates)
         | 
| 47 | 
            -
                  candidates.each_with_index do |f, i|
         | 
| 48 | 
            -
                    unless f.respond_to?(:call)
         | 
| 49 | 
            -
                      fail "Filter #{i} (#{f.class}) does not have a call method"
         | 
| 50 | 
            -
                    end
         | 
| 51 | 
            -
                  end
         | 
| 52 | 
            -
                end
         | 
| 53 | 
            -
             | 
| 54 | 
            -
                def ensure_array(records)
         | 
| 55 | 
            -
                  case records
         | 
| 56 | 
            -
                  when nil
         | 
| 57 | 
            -
                    []
         | 
| 58 | 
            -
                  when Enumerable
         | 
| 59 | 
            -
                    records.to_a
         | 
| 60 | 
            -
                  else
         | 
| 61 | 
            -
                    [records]
         | 
| 62 | 
            -
                  end
         | 
| 63 | 
            -
                end
         | 
| 64 | 
            -
              end
         | 
| 65 | 
            -
            end
         | 
| 66 | 
            -
             |