ncs_mdes_warehouse 0.1.1 → 0.2.0

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Files changed (22) hide show
  1. data/.rspec +2 -0
  2. data/CHANGELOG.md +20 -0
  3. data/Rakefile +2 -3
  4. data/generated_models/ncs_navigator/warehouse/models/two_point_zero/spec_blood.rb +3 -3
  5. data/lib/ncs_navigator/warehouse.rb +1 -0
  6. data/lib/ncs_navigator/warehouse/cli.rb +46 -1
  7. data/lib/ncs_navigator/warehouse/comparator.rb +257 -0
  8. data/lib/ncs_navigator/warehouse/data_mapper.rb +20 -0
  9. data/lib/ncs_navigator/warehouse/database_initializer.rb +3 -4
  10. data/lib/ncs_navigator/warehouse/transform_status.rb +5 -1
  11. data/lib/ncs_navigator/warehouse/transformers/enum_transformer.rb +18 -3
  12. data/lib/ncs_navigator/warehouse/updating_shell.rb +1 -0
  13. data/lib/ncs_navigator/warehouse/version.rb +1 -1
  14. data/lib/ncs_navigator/warehouse/xml_emitter.rb +95 -13
  15. data/ncs_mdes_warehouse.gemspec +1 -1
  16. data/spec/ncs_navigator/warehouse/data_mapper_spec.rb +39 -0
  17. data/spec/ncs_navigator/warehouse/transform_load_spec.rb +3 -1
  18. data/spec/ncs_navigator/warehouse/transformers/database_spec.rb +3 -3
  19. data/spec/ncs_navigator/warehouse/transformers/enum_transformer_spec.rb +36 -5
  20. data/spec/ncs_navigator/warehouse/xml_emitter_spec.rb +176 -30
  21. data/spec/spec_helper.rb +54 -17
  22. metadata +39 -38
data/spec/spec_helper.rb CHANGED
@@ -15,11 +15,24 @@ require 'data_mapper'
15
15
  RSpec.configure do |config|
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  config.treat_symbols_as_metadata_keys_with_true_values = true
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17
 
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- ###### bcdatabase
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+ ##
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+ # A mostly-default configuration to use in tests of objects that
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+ # rely on the MDES specification so as to avoid initializing it
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+ # multiple times. It also contains the configuration pointing to the
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+ # test database schemas.
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+ def spec_config
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+ @spec_config || fail("Flag specs that use spec_config with :use_mdes or :use_database")
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+ end
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26
 
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- config.before(:all) do
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- NcsNavigator::Warehouse.bcdatabase =
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- Bcdatabase.load(File.expand_path('../bcdatabase', __FILE__), :transforms => [:datamapper])
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+ def init_spec_config
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+ @spec_config ||= NcsNavigator::Warehouse::Configuration.new.tap do |c|
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+ c.mdes_version = spec_mdes_version
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+ c.output_level = :quiet
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+ c.log_file = tmpdir + 'spec.log'
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+ c.bcdatabase_group = ENV['CI_RUBY'] ? :public_ci_postgresql9 : :local_postgresql
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+ c.bcdatabase_entries[:working] = :mdes_warehouse_working_test
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+ c.bcdatabase_entries[:reporting] = :mdes_warehouse_reporting_test
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+ end
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  end
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  ###### MDES model loading
@@ -32,20 +45,8 @@ RSpec.configure do |config|
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  ENV['SPEC_MDES_VERSION'] || NcsNavigator::Warehouse::DEFAULT_MDES_VERSION
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  end
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35
- ##
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- # A mostly-default configuration to use in tests of objects that
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- # rely on the MDES specification so as to avoid initializing it
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- # multiple times.
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- def spec_config
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- @spec_config || fail("Flag specs that use spec_config with :use_mdes")
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- end
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-
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48
  config.before(:each, :use_mdes) do
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- @spec_config ||= NcsNavigator::Warehouse::Configuration.new.tap do |c|
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- c.mdes_version = spec_mdes_version
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- c.output_level = :quiet
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- c.log_file = tmpdir + 'spec.log'
48
- end
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+ init_spec_config
49
50
  end
50
51
 
51
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  ###### modifies_warehouse_state
@@ -62,6 +63,42 @@ RSpec.configure do |config|
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  @global_state_preserver.restore
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  end
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65
 
66
+ ###### use_database
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+
68
+ config.before(:each, :use_database) do
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+ init_spec_config
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+
71
+ $db_init ||=
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+ begin
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+ init = NcsNavigator::Warehouse::DatabaseInitializer.new(spec_config)
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+ init.set_up_repository(:both)
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+ init.replace_schema
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+ init.clone_working_to_reporting
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+ end
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+ end
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+
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+ config.after(:each, :use_database) do
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+ ::DataMapper::Model.descendants.each do |model|
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+ begin
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+ DataMapper.repository.adapter.execute("TRUNCATE TABLE #{model.storage_name}")
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+ rescue DataObjects::SyntaxError
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+ # table was never created
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+ end
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+ end
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+ end
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+
90
+ ###### bcdatabase
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+
92
+ config.before(:each, :use_test_bcdatabase) do
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+ use_test_bcdatabase
94
+ end
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+
96
+ def use_test_bcdatabase
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+ fail 'Use :modifies_warehouse_state with use_test_database' unless @global_state_preserver
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+ NcsNavigator::Warehouse.bcdatabase =
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+ Bcdatabase.load(File.expand_path('../bcdatabase', __FILE__), :transforms => [:datamapper])
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+ end
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+
65
102
  ###### tmpdir
66
103
 
67
104
  config.after do
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
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  name: ncs_mdes_warehouse
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3
  version: !ruby/object:Gem::Version
4
- version: 0.1.1
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+ version: 0.2.0
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  prerelease:
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  platform: ruby
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  authors:
@@ -9,25 +9,22 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
12
- date: 2011-11-18 00:00:00.000000000Z
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+ date: 2011-12-11 00:00:00.000000000Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: ncs_mdes
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- requirement: &2156621720 !ruby/object:Gem::Requirement
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+ requirement: &2152563420 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
19
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  - - ~>
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  - !ruby/object:Gem::Version
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- version: '0.4'
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- - - ! '>='
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- - !ruby/object:Gem::Version
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- version: 0.4.2
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+ version: '0.5'
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  type: :runtime
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  prerelease: false
27
- version_requirements: *2156621720
24
+ version_requirements: *2152563420
28
25
  - !ruby/object:Gem::Dependency
29
26
  name: ncs_navigator_configuration
30
- requirement: &2156620240 !ruby/object:Gem::Requirement
27
+ requirement: &2152561100 !ruby/object:Gem::Requirement
31
28
  none: false
32
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  requirements:
33
30
  - - ~>
@@ -35,10 +32,10 @@ dependencies:
35
32
  version: '0.2'
36
33
  type: :runtime
37
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  prerelease: false
38
- version_requirements: *2156620240
35
+ version_requirements: *2152561100
39
36
  - !ruby/object:Gem::Dependency
40
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  name: activesupport
41
- requirement: &2156614960 !ruby/object:Gem::Requirement
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+ requirement: &2152559400 !ruby/object:Gem::Requirement
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  none: false
43
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  requirements:
44
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  - - ~>
@@ -46,10 +43,10 @@ dependencies:
46
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  version: '3.0'
47
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  type: :runtime
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  prerelease: false
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- version_requirements: *2156614960
46
+ version_requirements: *2152559400
50
47
  - !ruby/object:Gem::Dependency
51
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  name: i18n
52
- requirement: &2156613720 !ruby/object:Gem::Requirement
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+ requirement: &2152558860 !ruby/object:Gem::Requirement
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  none: false
54
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  requirements:
55
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  - - ~>
@@ -57,10 +54,10 @@ dependencies:
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  version: '0.4'
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  type: :runtime
59
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  prerelease: false
60
- version_requirements: *2156613720
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+ version_requirements: *2152558860
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  - !ruby/object:Gem::Dependency
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  name: thor
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- requirement: &2156612920 !ruby/object:Gem::Requirement
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+ requirement: &2152558360 !ruby/object:Gem::Requirement
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  none: false
65
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  requirements:
66
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  - - ~>
@@ -68,10 +65,10 @@ dependencies:
68
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  version: 0.14.6
69
66
  type: :runtime
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  prerelease: false
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- version_requirements: *2156612920
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+ version_requirements: *2152558360
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  - !ruby/object:Gem::Dependency
73
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  name: rubyzip
74
- requirement: &2156612060 !ruby/object:Gem::Requirement
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+ requirement: &2152557580 !ruby/object:Gem::Requirement
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  none: false
76
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  requirements:
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  - - ~>
@@ -79,10 +76,10 @@ dependencies:
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  version: 0.9.4
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  type: :runtime
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  prerelease: false
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- version_requirements: *2156612060
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+ version_requirements: *2152557580
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  - !ruby/object:Gem::Dependency
84
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  name: nokogiri
85
- requirement: &2156611040 !ruby/object:Gem::Requirement
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+ requirement: &2152556800 !ruby/object:Gem::Requirement
86
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  none: false
87
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  requirements:
88
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  - - ~>
@@ -90,10 +87,10 @@ dependencies:
90
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  version: 1.5.0
91
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  type: :runtime
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  prerelease: false
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- version_requirements: *2156611040
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+ version_requirements: *2152556800
94
91
  - !ruby/object:Gem::Dependency
95
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  name: builder
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- requirement: &2156609980 !ruby/object:Gem::Requirement
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+ requirement: &2152556200 !ruby/object:Gem::Requirement
97
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  none: false
98
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  requirements:
99
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  - - ! '>='
@@ -101,10 +98,10 @@ dependencies:
101
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  version: 2.1.2
102
99
  type: :runtime
103
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  prerelease: false
104
- version_requirements: *2156609980
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+ version_requirements: *2152556200
105
102
  - !ruby/object:Gem::Dependency
106
103
  name: data_mapper
107
- requirement: &2156609220 !ruby/object:Gem::Requirement
104
+ requirement: &2152555680 !ruby/object:Gem::Requirement
108
105
  none: false
109
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  requirements:
110
107
  - - ~>
@@ -112,10 +109,10 @@ dependencies:
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  version: 1.2.0
113
110
  type: :runtime
114
111
  prerelease: false
115
- version_requirements: *2156609220
112
+ version_requirements: *2152555680
116
113
  - !ruby/object:Gem::Dependency
117
114
  name: bcdatabase
118
- requirement: &2156608360 !ruby/object:Gem::Requirement
115
+ requirement: &2152555140 !ruby/object:Gem::Requirement
119
116
  none: false
120
117
  requirements:
121
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  - - ~>
@@ -123,10 +120,10 @@ dependencies:
123
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  version: '1.1'
124
121
  type: :runtime
125
122
  prerelease: false
126
- version_requirements: *2156608360
123
+ version_requirements: *2152555140
127
124
  - !ruby/object:Gem::Dependency
128
125
  name: dm-postgres-adapter
129
- requirement: &2156607420 !ruby/object:Gem::Requirement
126
+ requirement: &2152554620 !ruby/object:Gem::Requirement
130
127
  none: false
131
128
  requirements:
132
129
  - - ~>
@@ -134,10 +131,10 @@ dependencies:
134
131
  version: 1.2.0
135
132
  type: :runtime
136
133
  prerelease: false
137
- version_requirements: *2156607420
134
+ version_requirements: *2152554620
138
135
  - !ruby/object:Gem::Dependency
139
136
  name: rspec
140
- requirement: &2156606300 !ruby/object:Gem::Requirement
137
+ requirement: &2152553900 !ruby/object:Gem::Requirement
141
138
  none: false
142
139
  requirements:
143
140
  - - ~>
@@ -145,10 +142,10 @@ dependencies:
145
142
  version: '2.6'
146
143
  type: :development
147
144
  prerelease: false
148
- version_requirements: *2156606300
145
+ version_requirements: *2152553900
149
146
  - !ruby/object:Gem::Dependency
150
147
  name: rake
151
- requirement: &2156604880 !ruby/object:Gem::Requirement
148
+ requirement: &2152553140 !ruby/object:Gem::Requirement
152
149
  none: false
153
150
  requirements:
154
151
  - - ~>
@@ -156,10 +153,10 @@ dependencies:
156
153
  version: 0.9.2
157
154
  type: :development
158
155
  prerelease: false
159
- version_requirements: *2156604880
156
+ version_requirements: *2152553140
160
157
  - !ruby/object:Gem::Dependency
161
158
  name: yard
162
- requirement: &2156603540 !ruby/object:Gem::Requirement
159
+ requirement: &2152552420 !ruby/object:Gem::Requirement
163
160
  none: false
164
161
  requirements:
165
162
  - - ~>
@@ -167,10 +164,10 @@ dependencies:
167
164
  version: 0.7.2
168
165
  type: :development
169
166
  prerelease: false
170
- version_requirements: *2156603540
167
+ version_requirements: *2152552420
171
168
  - !ruby/object:Gem::Dependency
172
169
  name: ci_reporter
173
- requirement: &2156602740 !ruby/object:Gem::Requirement
170
+ requirement: &2152551400 !ruby/object:Gem::Requirement
174
171
  none: false
175
172
  requirements:
176
173
  - - ~>
@@ -178,10 +175,10 @@ dependencies:
178
175
  version: 1.6.5
179
176
  type: :development
180
177
  prerelease: false
181
- version_requirements: *2156602740
178
+ version_requirements: *2152551400
182
179
  - !ruby/object:Gem::Dependency
183
180
  name: fakefs
184
- requirement: &2156601440 !ruby/object:Gem::Requirement
181
+ requirement: &2152550660 !ruby/object:Gem::Requirement
185
182
  none: false
186
183
  requirements:
187
184
  - - ~>
@@ -189,7 +186,7 @@ dependencies:
189
186
  version: 0.4.0
190
187
  type: :development
191
188
  prerelease: false
192
- version_requirements: *2156601440
189
+ version_requirements: *2152550660
193
190
  description:
194
191
  email:
195
192
  - r-sutphin@northwestern.edu
@@ -199,6 +196,7 @@ extensions: []
199
196
  extra_rdoc_files: []
200
197
  files:
201
198
  - .gitignore
199
+ - .rspec
202
200
  - .rvmrc
203
201
  - .yardopts
204
202
  - CHANGELOG.md
@@ -475,6 +473,7 @@ files:
475
473
  - init.rakefile
476
474
  - lib/ncs_navigator/warehouse.rb
477
475
  - lib/ncs_navigator/warehouse/cli.rb
476
+ - lib/ncs_navigator/warehouse/comparator.rb
478
477
  - lib/ncs_navigator/warehouse/configuration.rb
479
478
  - lib/ncs_navigator/warehouse/configuration/file_evaluator.rb
480
479
  - lib/ncs_navigator/warehouse/data_mapper.rb
@@ -507,6 +506,7 @@ files:
507
506
  - spec/global_state_helper.rb
508
507
  - spec/navigator.ini
509
508
  - spec/ncs_navigator/warehouse/configuration_spec.rb
509
+ - spec/ncs_navigator/warehouse/data_mapper_spec.rb
510
510
  - spec/ncs_navigator/warehouse/models/mdes_model_spec.rb
511
511
  - spec/ncs_navigator/warehouse/postgresql/pgpass_spec.rb
512
512
  - spec/ncs_navigator/warehouse/table_modeler_spec.rb
@@ -554,6 +554,7 @@ test_files:
554
554
  - spec/global_state_helper.rb
555
555
  - spec/navigator.ini
556
556
  - spec/ncs_navigator/warehouse/configuration_spec.rb
557
+ - spec/ncs_navigator/warehouse/data_mapper_spec.rb
557
558
  - spec/ncs_navigator/warehouse/models/mdes_model_spec.rb
558
559
  - spec/ncs_navigator/warehouse/postgresql/pgpass_spec.rb
559
560
  - spec/ncs_navigator/warehouse/table_modeler_spec.rb