ncs_mdes_warehouse 0.0.2 → 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/CHANGELOG.md +16 -0
- data/generated_models/ncs_navigator/warehouse/models/two_point_zero/env_equipment_prob_log.rb +1 -1
- data/generated_models/ncs_navigator/warehouse/models/two_point_zero/incident.rb +6 -6
- data/generated_models/ncs_navigator/warehouse/models/two_point_zero/participant_rvis.rb +1 -1
- data/generated_models/ncs_navigator/warehouse/models/two_point_zero/sample_shipping.rb +1 -1
- data/lib/ncs_navigator/warehouse.rb +4 -0
- data/lib/ncs_navigator/warehouse/cli.rb +31 -1
- data/lib/ncs_navigator/warehouse/configuration.rb +49 -9
- data/lib/ncs_navigator/warehouse/database_initializer.rb +62 -4
- data/lib/ncs_navigator/warehouse/models.rb +3 -0
- data/lib/ncs_navigator/warehouse/postgresql.rb +7 -0
- data/lib/ncs_navigator/warehouse/postgresql/pgpass.rb +79 -0
- data/lib/ncs_navigator/warehouse/table_modeler/mdes_ext.rb +9 -0
- data/lib/ncs_navigator/warehouse/table_modeler/model_template.rb.erb +1 -1
- data/lib/ncs_navigator/warehouse/transform_load.rb +55 -0
- data/lib/ncs_navigator/warehouse/transform_status.rb +63 -0
- data/lib/ncs_navigator/warehouse/transformers.rb +0 -1
- data/lib/ncs_navigator/warehouse/transformers/database.rb +91 -85
- data/lib/ncs_navigator/warehouse/transformers/enum_transformer.rb +26 -8
- data/lib/ncs_navigator/warehouse/transformers/vdr_xml.rb +1 -1
- data/lib/ncs_navigator/warehouse/transformers/vdr_xml/reader.rb +11 -4
- data/lib/ncs_navigator/warehouse/version.rb +1 -1
- data/spec/bcdatabase/test_sqlite.yml +4 -0
- data/spec/ncs_navigator/warehouse/configuration_spec.rb +42 -0
- data/spec/ncs_navigator/warehouse/postgresql/pgpass_spec.rb +187 -0
- data/spec/ncs_navigator/warehouse/table_modeler_spec.rb +15 -1
- data/spec/ncs_navigator/warehouse/transform_load_spec.rb +152 -0
- data/spec/ncs_navigator/warehouse/transformers/database_spec.rb +24 -28
- data/spec/ncs_navigator/warehouse/transformers/enum_transformer_spec.rb +16 -10
- data/spec/ncs_navigator/warehouse/transformers/vdr_xml/made_up_vdr_xml.xml +4 -4
- data/spec/ncs_navigator/warehouse/transformers/vdr_xml/reader_spec.rb +8 -3
- data/spec/spec_helper.rb +1 -1
- metadata +44 -37
- data/lib/ncs_navigator/warehouse/transformers/transform_status.rb +0 -23
@@ -116,6 +116,9 @@ module NcsNavigator::Warehouse::Transformers
|
|
116
116
|
row.id + 'Y'
|
117
117
|
]
|
118
118
|
end
|
119
|
+
|
120
|
+
produce_records :nothing, :query => 'SELECT * FROM people' do |row|
|
121
|
+
end
|
119
122
|
end
|
120
123
|
end
|
121
124
|
|
@@ -176,6 +179,14 @@ module NcsNavigator::Warehouse::Transformers
|
|
176
179
|
|
177
180
|
enumerator.to_a(:people).should == %w(B)
|
178
181
|
end
|
182
|
+
|
183
|
+
it 'yields nothing for an producer that returns nil' do
|
184
|
+
execute_sql(
|
185
|
+
"INSERT INTO people (id) VALUES ('A')"
|
186
|
+
)
|
187
|
+
|
188
|
+
enumerator.to_a(:nothing).should == []
|
189
|
+
end
|
179
190
|
end
|
180
191
|
end
|
181
192
|
|
@@ -211,7 +222,7 @@ module NcsNavigator::Warehouse::Transformers
|
|
211
222
|
end
|
212
223
|
end
|
213
224
|
|
214
|
-
describe '#
|
225
|
+
describe '#produce_one_for_one' do
|
215
226
|
# DataMapper models can't be anonymous
|
216
227
|
module Database::DSL::TestModels
|
217
228
|
class Address
|
@@ -234,6 +245,7 @@ module NcsNavigator::Warehouse::Transformers
|
|
234
245
|
|
235
246
|
let(:options) { {} }
|
236
247
|
let(:cls) { sample_class }
|
248
|
+
let(:producer) { cls.record_producers.first }
|
237
249
|
|
238
250
|
def make_row(contents)
|
239
251
|
Struct.new(*contents.keys).new.tap do |r|
|
@@ -244,7 +256,8 @@ module NcsNavigator::Warehouse::Transformers
|
|
244
256
|
end
|
245
257
|
|
246
258
|
def model_row(row)
|
247
|
-
cls.
|
259
|
+
cls.produce_one_for_one(:addresses, address_model, options)
|
260
|
+
producer.row_processor.call(make_row(row))
|
248
261
|
end
|
249
262
|
|
250
263
|
it 'maps a column to the property with the same name' do
|
@@ -271,13 +284,13 @@ module NcsNavigator::Warehouse::Transformers
|
|
271
284
|
model_row(:address_type => '-5', :address_length => '6')
|
272
285
|
fail "Exception not thrown"
|
273
286
|
rescue Database::UnusedColumnsForModelError => e
|
274
|
-
e.unused.should == [
|
287
|
+
e.unused.should == ['address_length']
|
275
288
|
end
|
276
289
|
end
|
277
290
|
|
278
291
|
it 'does not fail if the unused column is ignored in the options' do
|
279
292
|
options[:on_unused] = :fail
|
280
|
-
options[:
|
293
|
+
options[:ignored_columns] = %w(address_length)
|
281
294
|
lambda { model_row(:address_type => '-5', :address_length => '6') }.
|
282
295
|
should_not raise_error
|
283
296
|
end
|
@@ -301,7 +314,7 @@ module NcsNavigator::Warehouse::Transformers
|
|
301
314
|
model_row(:address_type => '-5', :address_length => '6')
|
302
315
|
fail "Exception not thrown"
|
303
316
|
rescue Database::UnusedColumnsForModelError => e
|
304
|
-
e.unused.should ==
|
317
|
+
e.unused.should == %w(address_length)
|
305
318
|
end
|
306
319
|
end
|
307
320
|
|
@@ -346,31 +359,14 @@ module NcsNavigator::Warehouse::Transformers
|
|
346
359
|
).street.should == '123 Anymain Dr.'
|
347
360
|
end
|
348
361
|
|
349
|
-
it '
|
350
|
-
|
351
|
-
|
352
|
-
end
|
353
|
-
end
|
354
|
-
|
355
|
-
describe 'with property value mappings' do
|
356
|
-
before do
|
357
|
-
options[:property_values] = {
|
358
|
-
:street => '456 Anywhere St.'
|
359
|
-
}
|
360
|
-
end
|
361
|
-
|
362
|
-
it 'prefers the explicit mapping to a column' do
|
363
|
-
model_row(:street => '123 Anymain Dr.').street.should == '456 Anywhere St.'
|
362
|
+
it 'does not include the default mapping in the total map' do
|
363
|
+
cls.produce_one_for_one(:addresses, address_model, options)
|
364
|
+
producer.column_map(%w(street street_loc)).keys.should == %w(street_loc)
|
364
365
|
end
|
365
366
|
|
366
|
-
it '
|
367
|
-
|
368
|
-
|
369
|
-
model_row(:street => '123 Anymain Dr.').street.should == '456 Anywhere St.'
|
370
|
-
fail "Exception not thrown"
|
371
|
-
rescue Database::UnusedColumnsForModelError => e
|
372
|
-
e.unused.should include(:street)
|
373
|
-
end
|
367
|
+
it 'always includes explicit mapping values in the total map' do
|
368
|
+
cls.produce_one_for_one(:addresses, address_model, options)
|
369
|
+
producer.column_map(%w(street)).keys.should == %w(street_loc)
|
374
370
|
end
|
375
371
|
end
|
376
372
|
end
|
@@ -9,14 +9,19 @@ module NcsNavigator::Warehouse::Transformers
|
|
9
9
|
property :name, String, :required => true
|
10
10
|
end
|
11
11
|
|
12
|
+
before(:all) do
|
13
|
+
DataMapper.finalize
|
14
|
+
end
|
15
|
+
|
12
16
|
describe '#transform' do
|
17
|
+
let(:config) { NcsNavigator::Warehouse::Configuration.new }
|
13
18
|
let(:records) { [
|
14
19
|
Sample.new(:id => 1, :name => 'One'),
|
15
20
|
Sample.new(:id => 2, :name => 'Two'),
|
16
21
|
Sample.new(:id => 3, :name => 'Three')
|
17
22
|
] }
|
18
|
-
let(:transform_status) { TransformStatus.
|
19
|
-
subject { EnumTransformer.new(records) }
|
23
|
+
let(:transform_status) { NcsNavigator::Warehouse::TransformStatus.memory_only('test') }
|
24
|
+
subject { EnumTransformer.new(config, records) }
|
20
25
|
|
21
26
|
it 'saves valid records when all are valid' do
|
22
27
|
records.each do |m|
|
@@ -25,7 +30,7 @@ module NcsNavigator::Warehouse::Transformers
|
|
25
30
|
end
|
26
31
|
|
27
32
|
subject.transform(transform_status)
|
28
|
-
transform_status.
|
33
|
+
transform_status.transform_errors.should be_empty
|
29
34
|
end
|
30
35
|
|
31
36
|
it 'automatically sets the PSU ID if the object accepts it'
|
@@ -40,8 +45,8 @@ module NcsNavigator::Warehouse::Transformers
|
|
40
45
|
end
|
41
46
|
|
42
47
|
it 'records the invalid instance' do
|
43
|
-
err = transform_status.
|
44
|
-
err.model_class.should == Sample
|
48
|
+
err = transform_status.transform_errors.first
|
49
|
+
err.model_class.should == Sample.to_s
|
45
50
|
err.message.should == 'Invalid record. Name must not be blank (name=nil). Sample id=3.'
|
46
51
|
end
|
47
52
|
|
@@ -60,8 +65,8 @@ module NcsNavigator::Warehouse::Transformers
|
|
60
65
|
end
|
61
66
|
|
62
67
|
it 'records the unsaveable instance' do
|
63
|
-
err = transform_status.
|
64
|
-
err.model_class.should == Sample
|
68
|
+
err = transform_status.transform_errors.first
|
69
|
+
err.model_class.should == Sample.to_s
|
65
70
|
err.message.should == 'Could not save. Sample id=2.'
|
66
71
|
end
|
67
72
|
|
@@ -80,9 +85,10 @@ module NcsNavigator::Warehouse::Transformers
|
|
80
85
|
end
|
81
86
|
|
82
87
|
it 'records the failing instance' do
|
83
|
-
err = transform_status.
|
84
|
-
err.model_class.should == Sample
|
85
|
-
err.message.should ==
|
88
|
+
err = transform_status.transform_errors.first
|
89
|
+
err.model_class.should == Sample.to_s
|
90
|
+
err.message.should ==
|
91
|
+
'Error on save. RuntimeError: No database around these parts. Sample id=1.'
|
86
92
|
end
|
87
93
|
|
88
94
|
it 'saves the saveable instances' do
|
@@ -1,5 +1,5 @@
|
|
1
1
|
<?xml version="1.0" encoding="UTF-8" ?>
|
2
|
-
<ncs:recruitment_substudy_transmission_envelope xmlns:ncs="http://www.nationalchildrensstudy.gov">
|
2
|
+
<ncs:recruitment_substudy_transmission_envelope xmlns:ncs="http://www.nationalchildrensstudy.gov" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
|
3
3
|
<ncs:transmission_header>
|
4
4
|
<sc_id>20000029</sc_id>
|
5
5
|
<psu_id>20000030</psu_id>
|
@@ -32,7 +32,7 @@
|
|
32
32
|
<list_id>100</list_id>
|
33
33
|
<ssu_id>13.1</ssu_id>
|
34
34
|
<tsu_id>-7</tsu_id>
|
35
|
-
<list_line>-7</list_line>
|
35
|
+
<list_line random_attr='foo'>-7</list_line>
|
36
36
|
<list_source>3</list_source>
|
37
37
|
<list_comment>NA</list_comment>
|
38
38
|
<transaction_type>NA</transaction_type>
|
@@ -41,7 +41,7 @@
|
|
41
41
|
<psu_id>20000030</psu_id>
|
42
42
|
<person_id>74</person_id>
|
43
43
|
<prefix>-7</prefix>
|
44
|
-
<first_name
|
44
|
+
<first_name>Josephine</first_name>
|
45
45
|
<last_name></last_name>
|
46
46
|
<middle_name></middle_name>
|
47
47
|
<maiden_name></maiden_name>
|
@@ -70,7 +70,7 @@
|
|
70
70
|
<p_info_date>2011-03-31</p_info_date>
|
71
71
|
<p_info_update>2011-03-31</p_info_update>
|
72
72
|
<person_comment>NA</person_comment>
|
73
|
-
<transaction_type
|
73
|
+
<transaction_type xsi:nil="true"/>
|
74
74
|
</person>
|
75
75
|
<link_contact>
|
76
76
|
<psu_id>20000030</psu_id>
|
@@ -8,6 +8,7 @@ class NcsNavigator::Warehouse::Transformers::VdrXml
|
|
8
8
|
let(:ssu) { reader.detect { |rec| rec.class.name =~ /Ssu$/ } }
|
9
9
|
let(:person) { reader.detect { |rec| rec.class.name =~ /Person$/ } }
|
10
10
|
let(:link_contact) { reader.detect { |rec| rec.class.name =~ /LinkContact$/ } }
|
11
|
+
let(:listing_unit) { reader.detect { |rec| rec.class.name =~ /ListingUnit$/ } }
|
11
12
|
|
12
13
|
it 'verifies the PSU matches the configuration'
|
13
14
|
it 'verifies the specification version matches the runtime MDES version'
|
@@ -21,21 +22,25 @@ class NcsNavigator::Warehouse::Transformers::VdrXml
|
|
21
22
|
%w(StudyCenter Psu Ssu ListingUnit Person LinkContact)
|
22
23
|
end
|
23
24
|
|
24
|
-
it 'reads
|
25
|
-
|
25
|
+
it 'reads variable values' do
|
26
|
+
person.first_name.should == 'Josephine'
|
26
27
|
end
|
27
28
|
|
28
29
|
it 'converts a -3 FK to no assocation' do
|
29
30
|
person.new_address_id.should be_nil
|
30
31
|
end
|
31
32
|
|
33
|
+
it 'ignores random attributes' do
|
34
|
+
listing_unit.list_line.should == "-7"
|
35
|
+
end
|
36
|
+
|
32
37
|
describe 'with a blank variable value' do
|
33
38
|
it 'converts a blank FK to no association' do
|
34
39
|
link_contact.instrument_id.should be_nil
|
35
40
|
end
|
36
41
|
|
37
42
|
it 'leaves another blank value as blank' do
|
38
|
-
person.
|
43
|
+
person.last_name.should == ''
|
39
44
|
end
|
40
45
|
end
|
41
46
|
end
|
data/spec/spec_helper.rb
CHANGED
@@ -70,7 +70,7 @@ RSpec.configure do |config|
|
|
70
70
|
|
71
71
|
# @return [Pathname] the path to an existing temporary director
|
72
72
|
def tmpdir(*path)
|
73
|
-
@tmpdir
|
73
|
+
@tmpdir = Pathname.new(File.expand_path('../../tmp', __FILE__)).
|
74
74
|
tap { |p| p.mkpath }
|
75
75
|
if path.empty?
|
76
76
|
@tmpdir
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: ncs_mdes_warehouse
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.0
|
4
|
+
version: 0.1.0
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -9,11 +9,11 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
|
-
date: 2011-11-
|
12
|
+
date: 2011-11-14 00:00:00.000000000Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: ncs_mdes
|
16
|
-
requirement: &
|
16
|
+
requirement: &2154732560 !ruby/object:Gem::Requirement
|
17
17
|
none: false
|
18
18
|
requirements:
|
19
19
|
- - ~>
|
@@ -24,10 +24,10 @@ dependencies:
|
|
24
24
|
version: 0.4.2
|
25
25
|
type: :runtime
|
26
26
|
prerelease: false
|
27
|
-
version_requirements: *
|
27
|
+
version_requirements: *2154732560
|
28
28
|
- !ruby/object:Gem::Dependency
|
29
29
|
name: ncs_navigator_configuration
|
30
|
-
requirement: &
|
30
|
+
requirement: &2154731640 !ruby/object:Gem::Requirement
|
31
31
|
none: false
|
32
32
|
requirements:
|
33
33
|
- - ~>
|
@@ -35,10 +35,10 @@ dependencies:
|
|
35
35
|
version: '0.1'
|
36
36
|
type: :runtime
|
37
37
|
prerelease: false
|
38
|
-
version_requirements: *
|
38
|
+
version_requirements: *2154731640
|
39
39
|
- !ruby/object:Gem::Dependency
|
40
40
|
name: activesupport
|
41
|
-
requirement: &
|
41
|
+
requirement: &2154731040 !ruby/object:Gem::Requirement
|
42
42
|
none: false
|
43
43
|
requirements:
|
44
44
|
- - ~>
|
@@ -46,10 +46,10 @@ dependencies:
|
|
46
46
|
version: '3.0'
|
47
47
|
type: :runtime
|
48
48
|
prerelease: false
|
49
|
-
version_requirements: *
|
49
|
+
version_requirements: *2154731040
|
50
50
|
- !ruby/object:Gem::Dependency
|
51
51
|
name: i18n
|
52
|
-
requirement: &
|
52
|
+
requirement: &2154730440 !ruby/object:Gem::Requirement
|
53
53
|
none: false
|
54
54
|
requirements:
|
55
55
|
- - ~>
|
@@ -57,10 +57,10 @@ dependencies:
|
|
57
57
|
version: '0.6'
|
58
58
|
type: :runtime
|
59
59
|
prerelease: false
|
60
|
-
version_requirements: *
|
60
|
+
version_requirements: *2154730440
|
61
61
|
- !ruby/object:Gem::Dependency
|
62
62
|
name: thor
|
63
|
-
requirement: &
|
63
|
+
requirement: &2154729880 !ruby/object:Gem::Requirement
|
64
64
|
none: false
|
65
65
|
requirements:
|
66
66
|
- - ~>
|
@@ -68,10 +68,10 @@ dependencies:
|
|
68
68
|
version: 0.14.6
|
69
69
|
type: :runtime
|
70
70
|
prerelease: false
|
71
|
-
version_requirements: *
|
71
|
+
version_requirements: *2154729880
|
72
72
|
- !ruby/object:Gem::Dependency
|
73
73
|
name: rubyzip
|
74
|
-
requirement: &
|
74
|
+
requirement: &2154729320 !ruby/object:Gem::Requirement
|
75
75
|
none: false
|
76
76
|
requirements:
|
77
77
|
- - ~>
|
@@ -79,10 +79,10 @@ dependencies:
|
|
79
79
|
version: 0.9.4
|
80
80
|
type: :runtime
|
81
81
|
prerelease: false
|
82
|
-
version_requirements: *
|
82
|
+
version_requirements: *2154729320
|
83
83
|
- !ruby/object:Gem::Dependency
|
84
84
|
name: nokogiri
|
85
|
-
requirement: &
|
85
|
+
requirement: &2154728700 !ruby/object:Gem::Requirement
|
86
86
|
none: false
|
87
87
|
requirements:
|
88
88
|
- - ~>
|
@@ -90,10 +90,10 @@ dependencies:
|
|
90
90
|
version: 1.5.0
|
91
91
|
type: :runtime
|
92
92
|
prerelease: false
|
93
|
-
version_requirements: *
|
93
|
+
version_requirements: *2154728700
|
94
94
|
- !ruby/object:Gem::Dependency
|
95
95
|
name: builder
|
96
|
-
requirement: &
|
96
|
+
requirement: &2154728100 !ruby/object:Gem::Requirement
|
97
97
|
none: false
|
98
98
|
requirements:
|
99
99
|
- - ~>
|
@@ -101,10 +101,10 @@ dependencies:
|
|
101
101
|
version: '3.0'
|
102
102
|
type: :runtime
|
103
103
|
prerelease: false
|
104
|
-
version_requirements: *
|
104
|
+
version_requirements: *2154728100
|
105
105
|
- !ruby/object:Gem::Dependency
|
106
106
|
name: data_mapper
|
107
|
-
requirement: &
|
107
|
+
requirement: &2154727600 !ruby/object:Gem::Requirement
|
108
108
|
none: false
|
109
109
|
requirements:
|
110
110
|
- - ~>
|
@@ -112,10 +112,10 @@ dependencies:
|
|
112
112
|
version: 1.2.0
|
113
113
|
type: :runtime
|
114
114
|
prerelease: false
|
115
|
-
version_requirements: *
|
115
|
+
version_requirements: *2154727600
|
116
116
|
- !ruby/object:Gem::Dependency
|
117
117
|
name: bcdatabase
|
118
|
-
requirement: &
|
118
|
+
requirement: &2154726800 !ruby/object:Gem::Requirement
|
119
119
|
none: false
|
120
120
|
requirements:
|
121
121
|
- - ~>
|
@@ -123,10 +123,10 @@ dependencies:
|
|
123
123
|
version: '1.1'
|
124
124
|
type: :runtime
|
125
125
|
prerelease: false
|
126
|
-
version_requirements: *
|
126
|
+
version_requirements: *2154726800
|
127
127
|
- !ruby/object:Gem::Dependency
|
128
128
|
name: dm-postgres-adapter
|
129
|
-
requirement: &
|
129
|
+
requirement: &2154709640 !ruby/object:Gem::Requirement
|
130
130
|
none: false
|
131
131
|
requirements:
|
132
132
|
- - ~>
|
@@ -134,10 +134,10 @@ dependencies:
|
|
134
134
|
version: 1.2.0
|
135
135
|
type: :runtime
|
136
136
|
prerelease: false
|
137
|
-
version_requirements: *
|
137
|
+
version_requirements: *2154709640
|
138
138
|
- !ruby/object:Gem::Dependency
|
139
139
|
name: rspec
|
140
|
-
requirement: &
|
140
|
+
requirement: &2154709020 !ruby/object:Gem::Requirement
|
141
141
|
none: false
|
142
142
|
requirements:
|
143
143
|
- - ~>
|
@@ -145,10 +145,10 @@ dependencies:
|
|
145
145
|
version: '2.6'
|
146
146
|
type: :development
|
147
147
|
prerelease: false
|
148
|
-
version_requirements: *
|
148
|
+
version_requirements: *2154709020
|
149
149
|
- !ruby/object:Gem::Dependency
|
150
150
|
name: rake
|
151
|
-
requirement: &
|
151
|
+
requirement: &2154708560 !ruby/object:Gem::Requirement
|
152
152
|
none: false
|
153
153
|
requirements:
|
154
154
|
- - ~>
|
@@ -156,10 +156,10 @@ dependencies:
|
|
156
156
|
version: 0.9.2
|
157
157
|
type: :development
|
158
158
|
prerelease: false
|
159
|
-
version_requirements: *
|
159
|
+
version_requirements: *2154708560
|
160
160
|
- !ruby/object:Gem::Dependency
|
161
161
|
name: yard
|
162
|
-
requirement: &
|
162
|
+
requirement: &2154707960 !ruby/object:Gem::Requirement
|
163
163
|
none: false
|
164
164
|
requirements:
|
165
165
|
- - ~>
|
@@ -167,10 +167,10 @@ dependencies:
|
|
167
167
|
version: 0.7.2
|
168
168
|
type: :development
|
169
169
|
prerelease: false
|
170
|
-
version_requirements: *
|
170
|
+
version_requirements: *2154707960
|
171
171
|
- !ruby/object:Gem::Dependency
|
172
172
|
name: ci_reporter
|
173
|
-
requirement: &
|
173
|
+
requirement: &2154707300 !ruby/object:Gem::Requirement
|
174
174
|
none: false
|
175
175
|
requirements:
|
176
176
|
- - ~>
|
@@ -178,10 +178,10 @@ dependencies:
|
|
178
178
|
version: 1.6.5
|
179
179
|
type: :development
|
180
180
|
prerelease: false
|
181
|
-
version_requirements: *
|
181
|
+
version_requirements: *2154707300
|
182
182
|
- !ruby/object:Gem::Dependency
|
183
183
|
name: fakefs
|
184
|
-
requirement: &
|
184
|
+
requirement: &2154706660 !ruby/object:Gem::Requirement
|
185
185
|
none: false
|
186
186
|
requirements:
|
187
187
|
- - ~>
|
@@ -189,7 +189,7 @@ dependencies:
|
|
189
189
|
version: 0.4.0
|
190
190
|
type: :development
|
191
191
|
prerelease: false
|
192
|
-
version_requirements: *
|
192
|
+
version_requirements: *2154706660
|
193
193
|
description:
|
194
194
|
email:
|
195
195
|
- r-sutphin@northwestern.edu
|
@@ -483,13 +483,16 @@ files:
|
|
483
483
|
- lib/ncs_navigator/warehouse/models.rb
|
484
484
|
- lib/ncs_navigator/warehouse/models/mdes_model.rb
|
485
485
|
- lib/ncs_navigator/warehouse/models/mdes_model_collection.rb
|
486
|
+
- lib/ncs_navigator/warehouse/postgresql.rb
|
487
|
+
- lib/ncs_navigator/warehouse/postgresql/pgpass.rb
|
486
488
|
- lib/ncs_navigator/warehouse/table_modeler.rb
|
487
489
|
- lib/ncs_navigator/warehouse/table_modeler/mdes_ext.rb
|
488
490
|
- lib/ncs_navigator/warehouse/table_modeler/model_template.rb.erb
|
491
|
+
- lib/ncs_navigator/warehouse/transform_load.rb
|
492
|
+
- lib/ncs_navigator/warehouse/transform_status.rb
|
489
493
|
- lib/ncs_navigator/warehouse/transformers.rb
|
490
494
|
- lib/ncs_navigator/warehouse/transformers/database.rb
|
491
495
|
- lib/ncs_navigator/warehouse/transformers/enum_transformer.rb
|
492
|
-
- lib/ncs_navigator/warehouse/transformers/transform_status.rb
|
493
496
|
- lib/ncs_navigator/warehouse/transformers/vdr_xml.rb
|
494
497
|
- lib/ncs_navigator/warehouse/transformers/vdr_xml/reader.rb
|
495
498
|
- lib/ncs_navigator/warehouse/updating_shell.rb
|
@@ -504,7 +507,9 @@ files:
|
|
504
507
|
- spec/navigator.ini
|
505
508
|
- spec/ncs_navigator/warehouse/configuration_spec.rb
|
506
509
|
- spec/ncs_navigator/warehouse/models/mdes_model_spec.rb
|
510
|
+
- spec/ncs_navigator/warehouse/postgresql/pgpass_spec.rb
|
507
511
|
- spec/ncs_navigator/warehouse/table_modeler_spec.rb
|
512
|
+
- spec/ncs_navigator/warehouse/transform_load_spec.rb
|
508
513
|
- spec/ncs_navigator/warehouse/transformers/database_spec.rb
|
509
514
|
- spec/ncs_navigator/warehouse/transformers/enum_transformer_spec.rb
|
510
515
|
- spec/ncs_navigator/warehouse/transformers/vdr_xml/made_up_vdr_xml.xml
|
@@ -529,7 +534,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
529
534
|
version: '0'
|
530
535
|
segments:
|
531
536
|
- 0
|
532
|
-
hash:
|
537
|
+
hash: -4006681032861892905
|
533
538
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
534
539
|
none: false
|
535
540
|
requirements:
|
@@ -538,7 +543,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
538
543
|
version: '0'
|
539
544
|
segments:
|
540
545
|
- 0
|
541
|
-
hash:
|
546
|
+
hash: -4006681032861892905
|
542
547
|
requirements: []
|
543
548
|
rubyforge_project:
|
544
549
|
rubygems_version: 1.8.10
|
@@ -554,7 +559,9 @@ test_files:
|
|
554
559
|
- spec/navigator.ini
|
555
560
|
- spec/ncs_navigator/warehouse/configuration_spec.rb
|
556
561
|
- spec/ncs_navigator/warehouse/models/mdes_model_spec.rb
|
562
|
+
- spec/ncs_navigator/warehouse/postgresql/pgpass_spec.rb
|
557
563
|
- spec/ncs_navigator/warehouse/table_modeler_spec.rb
|
564
|
+
- spec/ncs_navigator/warehouse/transform_load_spec.rb
|
558
565
|
- spec/ncs_navigator/warehouse/transformers/database_spec.rb
|
559
566
|
- spec/ncs_navigator/warehouse/transformers/enum_transformer_spec.rb
|
560
567
|
- spec/ncs_navigator/warehouse/transformers/vdr_xml/made_up_vdr_xml.xml
|