ncbo_annotator 1.0.4 → 1.0.5
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- data/lib/ncbo_annotator/parser.rb +15 -0
- data/lib/ncbo_annotator.rb +13 -1
- metadata +3 -3
@@ -44,6 +44,21 @@ module NCBO
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44
44
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ontologies = parse_ontologies("ontologyBean")
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45
45
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ontologies
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46
46
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end
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47
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+
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48
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+
def self.parse_semantic_types(semantic_types)
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49
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+
new(semantic_types).parse_semantic_types
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50
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end
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51
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+
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52
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+
def parse_semantic_types
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53
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+
@root = "/success/data/list"
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54
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+
semantic_types = []
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55
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+
@results.find(@root + "/semanticTypeBean").each do |semantic_type_bean|
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56
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+
semantic_type = {}
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57
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+
semantic_type_bean.children.each { |child| semantic_type[child.name.to_sym] = safe_to_i(child.content) }
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58
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+
semantic_types << semantic_type
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59
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+
end
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60
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+
semantic_types
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61
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+
end
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47
62
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48
63
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private
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49
64
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data/lib/ncbo_annotator.rb
CHANGED
@@ -1,4 +1,3 @@
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1
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-
require 'rubygems'
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2
1
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require 'net/http'
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3
2
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require 'xml'
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4
3
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require 'uri'
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@@ -63,6 +62,19 @@ module NCBO
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63
62
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end
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64
63
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end
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65
64
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65
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+
def self.semantic_types(options)
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66
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+
new(options).semantic_types
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67
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+
end
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68
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+
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69
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+
def semantic_types
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70
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+
if @semantic_types.nil?
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71
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+
semantic_types_xml = open("#{@options[:annotator_location]}/semanticTypes?apikey=#{@options[:apikey]}").read
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72
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+
@semantic_types = Parser::Annotator.parse_semantic_types(semantic_types_xml)
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73
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+
else
|
74
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+
@semantic_types
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75
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+
end
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76
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+
end
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77
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+
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66
78
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def options
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67
79
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@options
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68
80
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end
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: ncbo_annotator
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3
3
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version: !ruby/object:Gem::Version
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4
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-
hash:
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4
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+
hash: 29
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5
5
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prerelease:
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6
6
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segments:
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7
7
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- 1
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8
8
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- 0
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9
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-
-
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10
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-
version: 1.0.
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9
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+
- 5
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10
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+
version: 1.0.5
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11
11
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platform: ruby
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12
12
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authors:
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13
13
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- Paul R Alexander
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