ncbo_annotator 1.0.4 → 1.0.5

data/lib/ncbo_annotator/parser.rb

@@ -44,6 +44,21 @@ module NCBO
         ontologies = parse_ontologies("ontologyBean")
         ontologies
       end
+      
+      def self.parse_semantic_types(semantic_types)
+        new(semantic_types).parse_semantic_types
+      end
+      
+      def parse_semantic_types
+        @root = "/success/data/list"
+        semantic_types = []
+        @results.find(@root + "/semanticTypeBean").each do |semantic_type_bean|
+          semantic_type = {}
+          semantic_type_bean.children.each { |child| semantic_type[child.name.to_sym] = safe_to_i(child.content) }
+          semantic_types << semantic_type
+        end
+        semantic_types
+      end
 
       private
       

data/lib/ncbo_annotator.rb

@@ -1,4 +1,3 @@
-require 'rubygems'
 require 'net/http'
 require 'xml'
 require 'uri'
@@ -63,6 +62,19 @@ module NCBO
       end
     end
     
+    def self.semantic_types(options)
+      new(options).semantic_types
+    end
+    
+    def semantic_types
+      if @semantic_types.nil?
+        semantic_types_xml = open("#{@options[:annotator_location]}/semanticTypes?apikey=#{@options[:apikey]}").read
+        @semantic_types = Parser::Annotator.parse_semantic_types(semantic_types_xml)
+      else
+        @semantic_types
+      end
+    end
+    
     def options
       @options
     end

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: ncbo_annotator
 version: !ruby/object:Gem::Version 
-  hash: 31
+  hash: 29
   prerelease: 
   segments: 
   - 1
   - 0
-  - 4
-  version: 1.0.4
+  - 5
+  version: 1.0.5
 platform: ruby
 authors: 
 - Paul R Alexander