ncbi-taxonomy 0.2.8 → 0.2.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/ncbi_taxonomy.rb +34 -0
- metadata +5 -4
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 058fab962da5db20bbf8aa23d10bf267ee7ea381
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data.tar.gz: 4385346d384f897d2897223de781e00034567f98
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 10be41c36945bf6ee95c68e42abe96684bb361e6f792c5f30a5f553487a86827ac818965093bb59e84ce1727921614995cf46993c2e416d368ed6373c0d34821
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data.tar.gz: e46e5b937e3859d7658f1877cb44766f4059b875b1d398b7c609ba9486cbd95caf308e6316830e36d274b8386ebd82c226d4a5e1cc41b40e7a6d16176ec61665
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data/lib/ncbi_taxonomy.rb
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@@ -163,4 +163,38 @@ class Taxonomy
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end
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end
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end
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def mrun cmd, arr
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t = Array.new
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out = Array.new(arr.size)
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arr.each do |el|
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idx = t.size
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t << Thread.new(el, idx) do |myel, myidx|
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out[myidx] = self.method(cmd).call(myel)
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end
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end
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t.each { |myt| myt.join }
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out
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end
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def mget_allrank_by_id id_arr
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self.mrun 'get_allrank_by_id', id_arr
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end
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def mget_fixedrank_by_id id_arr
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self.mrun 'get_fixedrank_by_id', id_arr
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end
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def mget_allrank_by_name name_arr
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self.mrun 'get_allrank_by_name', name_arr
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end
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def mget_fixedrank_by_name name_arr
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self.mrun 'get_fixedrank_by_name', name_arr
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end
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end
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metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: ncbi-taxonomy
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.9
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platform: ruby
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authors:
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- Seok-Won Kim
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2016-
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date: 2016-09-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: sqlite3
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@@ -31,7 +31,7 @@ dependencies:
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- !ruby/object:Gem::Version
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version: 1.0.0
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description: This gem supports essential functions for fast access of NCBI Taxonomy
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database
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database.
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email: javamint@gmail.com
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executables:
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- ncbi_taxonomy
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@@ -61,8 +61,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.
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rubygems_version: 2.2.2
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signing_key:
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specification_version: 4
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summary: NCBI Taxonomy search using local repository
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test_files: []
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has_rdoc:
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