ncbi-blast-dbs 0.0.5 → 0.0.6

data/README.md

@@ -25,10 +25,8 @@ universal.
 
     ncbi-blast-dbs nt nr
 
-Databases are downloaded one after the other while volumes of each database
-are downloaded in parallel.
-
-    ncbi-blast-dbs nt nr
+Databases are downloaded one after the other. Volumes of each database are
+downloaded in parallel. Downloads are placed in the current directory.
 
 NCBI expects users to submit their email address when downloading data from
 their FTP server. To comply with that, download as:

data/lib/ncbi-blast-dbs.rake

@@ -47,8 +47,13 @@ databases.each do |name, files|
   multitask(name => files.map { |file| task(file) { download(file) } })
 end
 
+# Taxonomy database is different from sequence databases.
+task :taxdump do
+  download 'ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz'
+end
+
 # List name of all databases that can be downloaded if executed without
 # any arguments.
 task :default do
-  puts databases.keys.join(', ')
+  puts databases.keys.push('taxdump').join(', ')
 end

data/ncbi-blast-dbs.gemspec

@@ -2,7 +2,7 @@ Gem::Specification.new do |s|
   s.authors     = ['Anurag Priyam']
   s.email       = ['anurag08priyam@gmail.com']
   s.name        = 'ncbi-blast-dbs'
-  s.version     = '0.0.5'
+  s.version     = '0.0.6'
   s.summary     = 'Fast download BLAST databases from NCBI.'
   s.description = <<DESC
 Downloads BLAST databases from NCBI. Database files (volumes) are downloaded in

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: ncbi-blast-dbs
 version: !ruby/object:Gem::Version
-  version: 0.0.5
+  version: 0.0.6
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-02-17 00:00:00.000000000 Z
+date: 2017-04-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake