nano-lazar 1.1.0

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 8ba93bec47d549035dd09f66cc911bc1e7cb1b37
+  data.tar.gz: 787aa60c4dde2885cf3d4920ff8d521d302553cc
+SHA512:
+  metadata.gz: 0c861f5a2048bc60be150b9da1c2c7a62e1f102927bbc7cd54c1f4646a8fcf561d841b9de2d9c8911a4ab690dfe706bd18d3c47323237eceadc89dd7a545cb7d
+  data.tar.gz: 2a51ea30024748048a6091a445f85762eb72ffede1bccb70001c3015e15ff50c8ba6f6f1d10e7c1c720e77e155960a8959d28fa0ae7973b85d8c693cc159fa71

data/.gitignore

@@ -0,0 +1 @@
+Gemfile.lock

data/Gemfile

@@ -0,0 +1,8 @@
+source "https://rubygems.org"
+gemspec
+gem "lazar", :path => "../lazar"
+gem "qsar-report", :path => "../qsar-report"
+gem "sinatra"
+gem 'sinatra-reloader', '~> 1.0'
+gem "haml"
+gem "rdiscount"

data/LICENSE.md

@@ -0,0 +1,596 @@
+GNU GENERAL PUBLIC LICENSE
+==========================
+
+Version 3, 29 June 2007
+
+Copyright &copy; 2007 Free Software Foundation, Inc. &lt;<http://fsf.org/>&gt;
+
+Everyone is permitted to copy and distribute verbatim copies of this license
+document, but changing it is not allowed.
+
+## Preamble
+
+The GNU General Public License is a free, copyleft license for software and other
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+The licenses for most software and other practical works are designed to take away
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+
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+### 7. Additional Terms.
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+Additional terms, permissive or non-permissive, may be stated in the form of a
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+### 8. Termination.
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+You may not propagate or modify a covered work except as expressly provided under
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+
+### 10. Automatic Licensing of Downstream Recipients.
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+### 11. Patents.
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+A &ldquo;contributor&rdquo; is a copyright holder who authorizes use under this
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+for the patent license, your conveying the covered work in a country, or your
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+A patent license is &ldquo;discriminatory&rdquo; if it does not include within the
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+Nothing in this License shall be construed as excluding or limiting any implied
+license or other defenses to infringement that may otherwise be available to you
+under applicable patent law.
+
+### 12. No Surrender of Others' Freedom.
+
+If conditions are imposed on you (whether by court order, agreement or otherwise)
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+conditions of this License. If you cannot convey a covered work so as to satisfy
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+agree to terms that obligate you to collect a royalty for further conveying from
+those to whom you convey the Program, the only way you could satisfy both those terms
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+
+### 13. Use with the GNU Affero General Public License.
+
+Notwithstanding any other provision of this License, you have permission to link or
+combine any covered work with a work licensed under version 3 of the GNU Affero
+General Public License into a single combined work, and to convey the resulting work.
+The terms of this License will continue to apply to the part which is the covered
+work, but the special requirements of the GNU Affero General Public License, section
+13, concerning interaction through a network will apply to the combination as such.
+
+### 14. Revised Versions of this License.
+
+The Free Software Foundation may publish revised and/or new versions of the GNU
+General Public License from time to time. Such new versions will be similar in spirit
+to the present version, but may differ in detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program specifies that
+a certain numbered version of the GNU General Public License &ldquo;or any later
+version&rdquo; applies to it, you have the option of following the terms and
+conditions either of that numbered version or of any later version published by the
+Free Software Foundation. If the Program does not specify a version number of the GNU
+General Public License, you may choose any version ever published by the Free
+Software Foundation.
+
+If the Program specifies that a proxy can decide which future versions of the GNU
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+
+Later license versions may give you additional or different permissions. However, no
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+
+### 15. Disclaimer of Warranty.
+
+THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
+EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
+PROVIDE THE PROGRAM &ldquo;AS IS&rdquo; WITHOUT WARRANTY OF ANY KIND, EITHER
+EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE
+QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE
+DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+### 16. Limitation of Liability.
+
+IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY
+COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM AS
+PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL,
+INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE
+PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE
+OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE
+WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+### 17. Interpretation of Sections 15 and 16.
+
+If the disclaimer of warranty and limitation of liability provided above cannot be
+given local legal effect according to their terms, reviewing courts shall apply local
+law that most closely approximates an absolute waiver of all civil liability in
+connection with the Program, unless a warranty or assumption of liability accompanies
+a copy of the Program in return for a fee.
+
+END OF TERMS AND CONDITIONS
+
+## How to Apply These Terms to Your New Programs
+
+If you develop a new program, and you want it to be of the greatest possible use to
+the public, the best way to achieve this is to make it free software which everyone
+can redistribute and change under these terms.
+
+To do so, attach the following notices to the program. It is safest to attach them
+to the start of each source file to most effectively state the exclusion of warranty;
+and each file should have at least the &ldquo;copyright&rdquo; line and a pointer to
+where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program does terminal interaction, make it output a short notice like this
+when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type 'show c' for details.
+
+The hypothetical commands 'show w' and 'show c' should show the appropriate parts of
+the General Public License. Of course, your program's commands might be different;
+for a GUI interface, you would use an &ldquo;about box&rdquo;.
+
+You should also get your employer (if you work as a programmer) or school, if any, to
+sign a &ldquo;copyright disclaimer&rdquo; for the program, if necessary. For more
+information on this, and how to apply and follow the GNU GPL, see
+&lt;<http://www.gnu.org/licenses/>&gt;.
+
+The GNU General Public License does not permit incorporating your program into
+proprietary programs. If your program is a subroutine library, you may consider it
+more useful to permit linking proprietary applications with the library. If this is
+what you want to do, use the GNU Lesser General Public License instead of this
+License. But first, please read
+&lt;<http://www.gnu.org/philosophy/why-not-lgpl.html>&gt;.

data/README.md

@@ -0,0 +1,52 @@
+nano-lazar
+==========
+
+  nano-lazar for [eNanoMapper](http://www.enanomapper.net/) project.
+
+Dependencies
+------------
+
+  nano-lazar depends on a couple of external programs and libraries. All required libraries will be installed with the `gem install nano-lazar` or `bundle install` command. The output should give you more verbose information that can help in debugging (e.g. to identify missing libraries). 
+
+Installation
+------------  
+  
+  ```
+  gem install nano-lazar
+  ```
+
+  or
+
+  ```
+  git clone https://github.com/enanomapper/nano-lazar.git
+  cd nano-lazar
+  bundle install
+  ```
+
+Service
+-------
+
+  ```
+  nano-lazar-start
+  nano-lazar-stop
+  ```
+
+  or
+
+  ```
+  cd nano-lazar
+  unicorn -D
+  ```
+
+Browser
+-------
+  Point your browser to `localhost:8080` (default) or any other port passed within the unicorn start command.
+
+Documentation
+-------------
+  * [API documentation](http://rdoc.info/gems/nano-lazar)
+
+Copyright
+---------
+
+  Copyright (c) 2009-2016 Christoph Helma, Micha Rautenberg, Denis Gebele. See LICENSE for details.