nano-lazar 1.1.0

data/views/predict.haml

@@ -0,0 +1,299 @@
+:javascript
+
+  $(window).bind("pageshow", function(event) {
+    $("img.circle").hide();
+  });
+  
+  function showcircle() {
+    $("img.circle").show();
+  };
+  
+  function addCoating(type, coatings) {
+    //console.log(type, coatings);
+    var allCoatings = coatings;
+    var usedCoatings = [];
+    var removedCoating = [];
+    var div = document.getElementById("coatings");
+    var selectChilds = div.getElementsByTagName("select");
+    console.log(selectChilds);
+    // iterate the whole select elements and decide to add or remove;
+    // last coating should be always present; remove all used coatings
+    // from the option list for new elements, but add them back if a
+    // select element was removed;
+    for(i=0; i < selectChilds.length; i++){
+      id = selectChilds[i].id;
+      console.log(selectChilds[i].id);
+      value = selectChilds[i].value;
+      console.log(selectChilds[i].value);
+
+      if (type === "add"){
+        var element = document.getElementById(id);
+        var clone = element.cloneNode(true);
+        console.log(i);
+        console.log(i+1);
+        clone.id = "selCoating" + (selectChilds.length + 1);
+        clone.name = "input_coating_" + (selectChilds.length + 1);
+        console.log(clone.name);
+        div.appendChild(clone);
+        break;
+      };
+      if (type === "remove" && i !== 0){
+        var id = selectChilds[selectChilds.length - 1].id
+        document.getElementById(id).remove();
+        break;
+      }else{
+        //alert("One coating is required.")
+      };
+    };
+  };
+
+  $(document).ready(function(){  
+    $('#selCore1').change(function(){
+      var selection = $(this).val();
+      switch(selection){
+        case "Ag":
+          $("#physchem1").prop('disabled', false);
+          $("#physchem2").prop('disabled', false);
+          $("#physchem3").prop('disabled', true);
+          $("#physchem4").prop('disabled', true);
+          $("#physchem5").prop('disabled', true);
+          $("#physchem6").prop('disabled', false);
+          $("#physchem7").prop('disabled', true);
+          $("#physchem8").prop('disabled', true);
+          $("#physchem9").prop('disabled', true);
+          $("#physchem10").prop('disabled', true);
+          break;
+        case "Au":
+          $("#physchem1").prop('disabled', false);
+          $("#physchem2").prop('disabled', false);
+          $("#physchem3").prop('disabled', false);
+          $("#physchem4").prop('disabled', false);
+          $("#physchem5").prop('disabled', false);
+          $("#physchem6").prop('disabled', false);
+          $("#physchem7").prop('disabled', false);
+          $("#physchem8").prop('disabled', false);
+          $("#physchem9").prop('disabled', false);
+          $("#physchem10").prop('disabled', false);
+          break;
+      };
+    });
+  });
+
+%div.well
+  %h3.help-block
+    Select an endpoint:
+  #tabs
+    %ul.nav.nav-tabs{:id=>"modelTab", :role=>"tablist"}
+      - @prediction_models.each_with_index do |m, idx|
+        %li{:class => ("active" if idx == 0)}
+          %a{:href => "#model_#{idx}", :id => "linkTab#{idx}", data: {toggle:"tab"}}
+            = "#{idx+1}. #{m["type"].capitalize}"
+    %div.tab-content
+      - @prediction_models.each_with_index do |m, idx|
+        - case m["type"]
+        - when "fingerprint"
+          - example = @example_fingerprint
+          - type = "fingerprint"
+          - relevant_features = @fingerprint_relevant_features
+        - when "physchem"
+          - example = @example_physchem
+          - type = "physchem"
+          - relevant_features = @physchem_relevant_features
+        - when "proteomics"
+          - example = @example_proteomics
+          - type = "proteomics"
+          - relevant_features = @proteomics_relevant_features
+        
+        #model.tab-pane{:id=>"#{idx}", :class => ("active" if idx == 0)}
+          %b Model:
+          %br
+          Name:
+          = m.model.name
+          %br
+          Type: regression
+          %br
+          Source:
+          %a{:href=>"#{m.source}", :alt=>"source", :rel=>"external"}
+            = m.source
+          %br
+          Species:
+          = m.species
+          %br
+          Training nanoparticles:
+          = m.model.training_dataset.nanoparticles.size
+          %br
+          Endpoint:
+          = m.endpoint
+          %br
+          Unit:
+          = m.unit
+          %br
+          %b Algorithms:
+          %br
+          Similarity:
+          %a{:href=> "http://www.rubydoc.info/gems/lazar/OpenTox%2F#{m.model.algorithms["similarity"]["method"].sub("::", "%2F")}", :rel=>"external"}
+            = m.model.algorithms["similarity"]["method"]
+          = ", min: #{m.model.algorithms["similarity"]["min"]}"
+          %br
+          Prediction:
+          %a{:href=>"http://www.rubydoc.info/gems/lazar/OpenTox%2F#{m.model.algorithms["prediction"]["method"].sub("::","%2f")}", :rel=>"external"}
+            = m.model.algorithms["prediction"]["method"]
+          %br
+          Feature selection:
+          = m.model.algorithms["feature_selection"]["method"].split(".").last if m.model.algorithms["feature_selection"]
+          %br
+          Descriptors:
+          = m.model.algorithms["descriptors"]["method"]+","
+          = m.model.algorithms["descriptors"]["categories"]
+          %p
+          %b Independent crossvalidations (log2 transformed):
+          %div.row{:id=>"validations#{m.id}", :style=>"background-color:#f5f5f5;"}
+            - m.crossvalidations.each do |cv|
+              %span.col-xs-2.col-sm-2.col-md-2.col-lg-2
+                = "Num folds:\t"
+                = cv.folds
+                %br
+                = "Num instances:\t"
+                = cv.nr_instances
+                %br
+                = "Num unpredicted"
+                = cv.nr_unpredicted
+                %br
+                %a.ht5{:href=>"https://en.wikipedia.org/wiki/Root-mean-square_deviation", :rel=>"external"} RMSE:
+                = cv.rmse.round(3) if cv.rmse
+                %br
+                %a.ht5{:href=>"https://en.wikipedia.org/wiki/Mean_absolute_error", :rel=>"external"} MAE:
+                = cv.mae.round(3) if cv.mae
+                %br 
+                %a.ht5{:href=>"https://en.wikipedia.org/wiki/Coefficient_of_determination", :rel=>"external"}= "R"+"<sup>2</sup>"+":"
+                = cv.r_squared.round(3) if cv.r_squared
+          %br
+          %b QMRF report
+          %p
+          %a.btn.btn-default{:href=>to('/qmrf-report/'+m.id), :rel=>"external"} download
+          %hr
+          %form{:id=>idx, :role=>"form", :action=> to("/predict"), :method=>"post"}
+            %h3.help-block
+              Please characterise a nanoparticle:
+            
+            - if type == "fingerprint"
+              
+              %div.form-group
+                // type = fingerprint
+                // send hidden example data to compare
+                %input{:id=>"type",:type=>"hidden",:name=>"type",:value=>"#{type}"}
+                %input{:id=>"example_core",:type=>"hidden",:name=>"example_core",:value=>"#{example.core["name"]}"}
+                - example.coating.each_with_index do |ex_coating, idx|
+                  %input{:id=>"example_coating_#{idx}",:type=>"hidden",:name=>"example_coating_#{idx}",:value=>"#{ex_coating["name"]}"}
+                %input{:id=>"example_pc",:type=>"hidden",:name=>"example_pc",:value=>"{}"}
+                %input{:id=>"id",:type=>"hidden",:name=>"example_id",:value=>example.id}
+                
+              // input form parameters to transfer
+              // core
+              %div.form-group
+                %label{:for=>"selCore#{idx}"} Core
+                %select.form-control{:id=>"selCore#{idx}", :autocomplete=>"off", :name=>"input_core",:value=>example.core["name"]}
+                  %option{:selected => ("selected" if example.core["name"] == "Ag"), :value => "Ag"} Ag
+                  %option{:selected => ("selected" if example.core["name"] == "Au"), :value => "Au"} Au
+              
+              // coating
+              - coatings = $coating_list.collect{|nano| nano.coating.collect{|co| co["name"]}}.flatten.compact.uniq.sort_by(&:downcase)
+              %div.form-group{:id=>"coatings"}
+                %label{:for=>"selCoating#{idx}"} Coating
+                - example.coating.each_with_index do |ex_coating, idx|
+                  %select.form-control{:id=>"selCoating#{idx}", :autocomplete=>"off", :name=>"input_coating_#{idx}",:value=>ex_coating["name"]}
+                    - coatings.each do |co|
+                      %option{:selected => ("selected" if ex_coating["name"] == co), :value => co}
+                        = co
+                
+              %div{:id=>"coating_buttons"}
+                %span.btn.glyphicon.glyphicon-plus{:onclick=>"addCoating(\"add\", #{coatings});"}
+                %span.btn.glyphicon.glyphicon-minus{:onclick=>"addCoating(\"remove\", #{coatings});"}
+            
+            - if type =~ /physchem/
+              %div.form-group
+                // type = physchem,proteomics
+                // send hidden example data to compare
+                %input{:id=>"type",:type=>"hidden",:name=>"type",:value=>"#{type}"}
+                %input{:id=>"example_core",:type=>"hidden",:name=>"example_core",:value=>"#{example.core["name"]}"}
+                %input{:id=>"example_coating",:type=>"hidden",:name=>"example_coating",:value=>"#{example.coating[0]["name"]}"}
+                %input{:id=>"example_pc",:type=>"hidden",:name=>"example_pc",:value=>"#{example.properties}"}
+                - size = relevant_features.size
+                %input{:id=>"size",:type=>"hidden",:name=>"size",:value=>size}
+                %input{:id=>"id",:type=>"hidden",:name=>"example_id",:value=>example.id}
+                
+                // input form parameters to transfer
+                // core
+                %div.form-group
+                  %label{:for=>"selCore#{idx}"} Core
+                  %select.form-control{:id=>"selCore#{idx}", :autocomplete=>"off", :name=>"input_core",:value=>example.core["name"]}
+                    %option{:selected => ("selected" if example.core["name"] == "Ag"), :value => "Ag"} Ag
+                    %option{:selected => ("selected" if example.core["name"] == "Au"), :value => "Au"} Au
+              
+                // relevant features
+                - relevant_features.sort_by{|f| f.name}.each_with_index do |relf,id|
+                  - feature = relf
+                  - v = example.properties.find{|id,v| id == feature.id.to_s  }
+                  - name = feature.name
+                  - if feature[:conditions] && !feature[:conditions]["MEDIUM"].blank?
+                    - name = feature.name + " / " + feature[:conditions]["MEDIUM"]
+                  - else
+                    - name = feature.name
+                  - val = !v.nil? ? v[1] : ""
+                  - id = id + 1
+                  
+                  %h5
+                    %a.descriptor{:href=>$npo[feature.name], :rel=>"external"}= name + (feature.unit.blank? ? "" : " (#{feature.unit})")
+
+                  // input physchem parameters
+                  %input.input-sm.form-control{:id=>"physchem#{id}",:type=>"text",:name=>"input_value_#{id}",:value=>"#{val[0]}", :disabled=>("disabled" if val[0].blank?)}
+                  %input{:id=>id,:type=>"hidden",:name=>"input_key_#{id}",:value=>feature.id}
+            
+            - if type =~ /proteomics/
+              %div.form-group
+                // type = physchem,proteomics
+                // send hidden example data to compare
+                %input{:id=>"type",:type=>"hidden",:name=>"type",:value=>"#{type}"}
+                %input{:id=>"example_core",:type=>"hidden",:name=>"example_core",:value=>"#{example.core["name"]}"}
+                %input{:id=>"example_coating",:type=>"hidden",:name=>"example_coating",:value=>"#{example.coating[0]["name"]}"}
+                %input{:id=>"example_pc",:type=>"hidden",:name=>"example_pc",:value=>"#{example.properties}"}
+                - size = relevant_features.size
+                %input{:id=>"size",:type=>"hidden",:name=>"size",:value=>size}
+                %input{:id=>"id",:type=>"hidden",:name=>"example_id",:value=>example.id}
+                
+                // input form parameters to transfer
+                // core
+                %div.form-group
+                  %label{:for=>"selCore#{idx}"} Core
+                  %select.form-control{:id=>"selCore#{idx}", :autocomplete=>"off", :name=>"input_core",:value=>example.core["name"]}
+                    %option{:selected => ("selected" if example.core["name"] == "Ag"), :value => "Ag"} Ag
+                    %option{:selected => ("selected" if example.core["name"] == "Au"), :value => "Au"} Au
+                
+                // relevant features
+                - relevant_features.sort_by{|f| f.name}.each_with_index do |relf,id|
+                  - feature = relf
+                  - v = example.properties.find{|id,v| id == feature.id.to_s  }
+                  - name = feature.name
+                  - if feature[:conditions] && !feature[:conditions]["MEDIUM"].blank?
+                    - name = feature.name + " / " + feature[:conditions]["MEDIUM"]
+                  - else
+                    - name = feature.name
+                  - val = !v.nil? ? v[1] : ""
+                  - id = id + 1
+                  
+                  %h5
+                    %a{:href=>"http://www.uniprot.org/uniprot/#{name}", :rel=>"external"}= name + (feature.unit.blank? ? "" : " (#{feature.unit})")
+
+                  // input physchem parameters
+                  %input.input-sm.form-control{:id=>"#{id}",:type=>"text",:name=>"input_value_#{id}",:value=>"#{val[0]}"}
+                  %input{:id=>id,:type=>"hidden",:name=>"input_key_#{id}",:value=>feature.id}
+            
+            // prediction model id 
+            %input{:id=>"prediction_model",:type=>"hidden",:name=>"prediction_model",:value=>m.id}
+            
+            %hr
+            #predict
+              %button.btn.btn-success{:id=>"submitbutton", :type=>"submit", :onclick=>"showcircle();"} 
+                Find similar nano particles
+                %span.glyphicon.glyphicon-chevron-right{:id=>"span"}
+              %img{:src=>"/images/wait30trans.gif", :id=>"circle", :class=>"circle", :alt=>"wait", :style=>"display:none;"}

data/views/prediction.haml

@@ -0,0 +1,152 @@
+%div
+  %a.btn.btn-xs.btn-default{:href => to('/predict'), :style=>"margin-bottom:1em;"}
+    %span.glyphicon.glyphicon-chevron-left
+    New Prediction
+
+  %h3.help-block
+    Similar particles
+  
+  %hr  
+  :javascript 
+    $(document).ready(function(){
+      $(".tablesorter").tablesorter({
+        debug: false,
+        theme: "bootstrap",
+        //headerTemplate: '{content} {icon}',
+        widgets: ['uitheme', 'staticRow', 'stickyHeaders'],
+        widgetOptions: {
+          stickyHeaders_attachTo: 'neighbors',
+          stickyHeaders_offset: 0,
+          stickyHeaders_xScroll : null
+        },
+        sortList: [[1,1]],
+        widthFixed: false,
+      });
+      $('#neighbors').doubleScroll();
+    });
+
+
+  #neighbors.table-responsive
+    /%table.tablesorter{:style => "max-width:100%;white-space:nowrap;"}
+    %table.tablesorter
+      %thead
+        %tr
+          %th
+            ID  
+          %th
+            Similarity
+          %th
+            Composition  
+          %th.tox{:style => "max-width:100%;white-space:nowrap;"}
+            Toxicity 
+            %br 
+            Net cell association
+            %br
+            [mL/ug(Mg)]
+          - if @type =~ /physchem|proteomics/
+            - @input.each{|d| Feature.find(d[0]).category}.each do |key|
+              - feature = Feature.find_by(:id=>key[0])
+              - name = feature.name
+              - if (feature[:conditions] && !feature[:conditions]["MEDIUM"].blank?)
+                - name = feature.name + " / " + feature[:conditions]["MEDIUM"]
+              - else
+                - name = feature.name
+              %th.physchem.sorter-false
+                %a.descriptor{:href=>$npo[feature.name], :rel=>"external"}= name + (feature.unit.blank? ? "" : " (#{feature.unit})")
+      %tbody
+        / query and match combined
+        %tr.static
+          / id
+          %td
+            - if @match
+              %a{:href=> $ambit_search+@name, :rel=>"external"}
+                %h5.th5= @name
+            - else
+              %h5.th5 Query
+          / similarity
+          %td
+            %h5.th5 1.0
+          / composition
+          %td
+            - core = Substance.find @nanoparticle[:core_id]
+            %h5.th5 Core:
+            %a{:href=>core.source, :rel=>"external"}= "["+core.name+"]"
+            %br
+            - if @type == "fingerprint"
+              - coating = []
+              - @nanoparticle[:coating_ids].each{|id| coating << Substance.find(id) }
+              %h5.th5 Coating:
+              - coating.each do |co|
+                %a{:href=>co.source, :rel=>"external"}= co.name
+                %br
+          / tox
+          %td.tox
+            - if @prediction[:value]
+              %h5.th5 Prediction:
+              = @prediction[:value].round(3)
+              %br
+            - if @prediction[:value].blank?
+              %h5.th5 Prediction:
+              = "not available"
+              %br
+            - if @prediction[:prediction_interval]
+              %h5
+                %a{:href=>"https://en.wikipedia.org/wiki/Prediction_interval", :rel=>"external"} 95% Prediction interval:
+                - interval = @prediction[:prediction_interval].nil? ? " - - " : @prediction[:prediction_interval].collect{|i| i.round(2)}
+              = "#{interval[0]} - #{interval[1]}"
+            - if @prediction[:measurements]
+              %br
+              %h5.th5 Measurement:
+              - @prediction[:measurements].each do |m|
+                = m
+            - if !@prediction[:value] && !@prediction[:measurements]
+              %h5.th5 not available
+          / physchem
+          - if @type =~ /physchem|proteomics/
+            - @input.each do |v|
+              %td.physchem
+                %div{:style=>"display:inline-block;padding-right:20px;"}
+                  - if v[1].nil?
+                    %p x
+                  - else
+                    %p= v[1][0].round(3)
+
+        / neighbors
+        - if @prediction[:neighbors]
+          - @prediction[:neighbors].each_with_index do |neighbor,idx|
+            - nano = Nanoparticle.find(neighbor[:id])
+            - core = Substance.find nano.core_id
+            - coating = []
+            - nano.coating_ids.each{|id| coating << Substance.find(id)}
+            %tr
+              / ID
+              %td
+                %a{:href=> $ambit_search+nano.name, :rel=>"external"}
+                  %h5.th5= nano.name
+              / Similarity
+              %td
+                %h5.th5= neighbor[:similarity].round(3)
+              / Composition
+              %td
+                %h5.th5 Core:
+                %a{:href=>core.source, :rel=> "external"}= "["+core.name+"]"
+                %br
+                %h5.th5 Coating:
+                - coating.each do |co| 
+                  %a{:href=>co.source, :rel=>"external"}= co.name
+                  %br
+              / Tox
+              %td.tox
+                %h5.th5 Measurement:
+                = neighbor[:measurement]
+              / Physchem
+              - case @type
+              - when "physchem"
+                - nano.properties.delete_if{|id,v| !@physchem_relevant_features.include?(Feature.find(id))}.sort_by{|id,v| @physchem_relevant_features.index Feature.find(id)}.each do |k,v|
+                  %td.physchem
+                    = v[0].round(3) unless v.nil?
+              - when "proteomics"
+                - nano.properties.delete_if{|id,v| !@proteomics_relevant_features.include?(Feature.find(id))}.sort_by{|id,v| @proteomics_relevant_features.index Feature.find(id)}.each do |k,v|
+                  %td.physchem
+                    = v[0].round(3) unless v.nil?
+

metadata

@@ -0,0 +1,235 @@
+--- !ruby/object:Gem::Specification
+name: nano-lazar
+version: !ruby/object:Gem::Version
+  version: 1.1.0
+platform: ruby
+authors:
+- Christoph Helma
+- Micha Rautenberg
+- Denis Gebele
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2017-01-18 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: lazar
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: sinatra
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rdiscount
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: haml
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: unicorn
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: gem-path
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: Graphical user interface for nano-lazar toxicology predictions
+email:
+- helma@in-silico.ch
+- rautenberg@in-silico.ch
+- gebele@in-silico.ch
+executables:
+- nano-lazar-start
+- nano-lazar-stop
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- Gemfile
+- LICENSE.md
+- README.md
+- VERSION
+- application.rb
+- bin/nano-lazar-start
+- bin/nano-lazar-start.sh
+- bin/nano-lazar-stop
+- bin/nano-lazar-stop.sh
+- config.ru
+- feature-filter.rb
+- helper.rb
+- nano-lazar.gemspec
+- npo.rb
+- public/css/bootstrap.min.css
+- public/css/images/black-asc.gif
+- public/css/images/black-desc.gif
+- public/css/images/black-unsorted.gif
+- public/css/images/bootstrap-black-unsorted.png
+- public/css/images/bootstrap-white-unsorted.png
+- public/css/images/dragtable-handle.png
+- public/css/images/dragtable-handle.svg
+- public/css/images/dropbox-asc-hovered.png
+- public/css/images/dropbox-asc.png
+- public/css/images/dropbox-desc-hovered.png
+- public/css/images/dropbox-desc.png
+- public/css/images/first.png
+- public/css/images/green-asc.gif
+- public/css/images/green-desc.gif
+- public/css/images/green-header.gif
+- public/css/images/green-unsorted.gif
+- public/css/images/ice-asc.gif
+- public/css/images/ice-desc.gif
+- public/css/images/ice-unsorted.gif
+- public/css/images/last.png
+- public/css/images/loading.gif
+- public/css/images/metro-black-asc.png
+- public/css/images/metro-black-desc.png
+- public/css/images/metro-loading.gif
+- public/css/images/metro-unsorted.png
+- public/css/images/metro-white-asc.png
+- public/css/images/metro-white-desc.png
+- public/css/images/next.png
+- public/css/images/prev.png
+- public/css/images/white-asc.gif
+- public/css/images/white-desc.gif
+- public/css/images/white-unsorted.gif
+- public/css/jquery-ui.css
+- public/css/jquery-ui.theme.min.css
+- public/css/style.css
+- public/css/theme.bootstrap.min.css
+- public/css/theme.default.min.css
+- public/enm-workshop.html
+- public/enm-workshop.rst
+- public/fonts/glyphicons-halflings-regular.eot
+- public/fonts/glyphicons-halflings-regular.svg
+- public/fonts/glyphicons-halflings-regular.ttf
+- public/fonts/glyphicons-halflings-regular.woff
+- public/fonts/glyphicons-halflings-regular.woff2
+- public/images/Email.png
+- public/images/Facebook.png
+- public/images/Google+.png
+- public/images/IST_logo_s.png
+- public/images/LinkedIn.png
+- public/images/Twitter.png
+- public/images/enm-sm.jpg
+- public/images/enm_logo.png
+- public/images/favicon.ico
+- public/images/ist_logo.png
+- public/images/wait30trans.gif
+- public/javascripts/bootstrap.min.js
+- public/javascripts/google_analytics.js
+- public/javascripts/jquery-1.11.2.min.js
+- public/javascripts/jquery-ui-1.10.3.custom.min.js
+- public/javascripts/jquery.bpopup.min.js
+- public/javascripts/jquery.doubleScroll.js
+- public/javascripts/jquery.tablesorter.min.js
+- public/javascripts/jquery.tablesorter.staticrow.min.js
+- public/javascripts/jquery.tablesorter.widgets.js
+- public/javascripts/jquery.tools.min.js
+- public/javascripts/lazar-gui.js
+- public/javascripts/nanolazar.js
+- public/javascripts/widget-scroller.js
+- public/ui/small-white/blank.gif
+- public/ui/small-white/framing.css
+- public/ui/small-white/iepngfix.htc
+- public/ui/small-white/opera.css
+- public/ui/small-white/outline.css
+- public/ui/small-white/pretty.css
+- public/ui/small-white/print.css
+- public/ui/small-white/s5-core.css
+- public/ui/small-white/slides.css
+- public/ui/small-white/slides.js
+- unicorn.rb
+- views/layout.haml
+- views/license.haml
+- views/predict.haml
+- views/prediction.haml
+homepage: http://github.com/enanomapper/nano-lazar
+licenses:
+- GPL-3.0
+metadata: {}
+post_install_message: "\n    How to build nano-lazar prediction models described over
+  here: https://github.com/opentox/lazar-public-data .  \n    Service commands:\n
+  \     nano-lazar-start\n      nano-lazar-stop\n  "
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: 2.0.0
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: nano-lazar
+rubygems_version: 2.5.2
+signing_key: 
+specification_version: 4
+summary: nano-lazar
+test_files: []