name-spotter 0.0.4 → 0.0.5

data/README.rdoc

@@ -1,11 +1,39 @@
 = name-spotter
 
-Finds biodiversity scientific names in texts using TaxonFinder or NetiNeti libraries. This gem works with ruby >= 1.9.2
+Finds biodiversity scientific names in texts using TaxonFinder (by Patrick Leary) or NetiNeti (by Lakshmi Manohar Akella) libraries. This gem works with ruby >= 1.9.2
 
 == Installation
 
+* Install the gem
+
     gem install name-spotter
 
+* Install and run TaxonFinder in a new terminal window
+
+    wget http://taxon-finder.googlecode.com/files/taxon-finder.tar.gz
+    tar zxvf taxon-finder.tar.gz
+    cd taxon-finder
+    perl server.pl 
+
+* Install and run NetiNeti in a new terminal window
+
+    wget https://github.com/mbl-cli/NetiNeti/zipball/master
+    unzip master
+    cd cd mbl-cli-NetiNeti-*
+
+    #or
+
+    git clone git://github.com/mbl-cli/NetiNeti.git
+    cd NetiNeti
+
+    #then
+    
+    easy_install virtualenv
+    easy_install tornado
+    python neti_env.py virtualenvs/neti
+    cp config/neti_http_config.cfg.example config/neti_http_config.cfg
+    python neti_tornado_server.py 
+
 == Usage
 
 Fist you have to download TaxonFinder and NetiNeti services.

data/VERSION

@@ -1 +1 @@
-0.0.4
+0.0.5

data/name-spotter.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "name-spotter"
-  s.version = "0.0.4"
+  s.version = "0.0.5"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Anthony Goddard", "Chuck Ha", "Dmitry Mozzherin"]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: name-spotter
 version: !ruby/object:Gem::Version
-  version: 0.0.4
+  version: 0.0.5
   prerelease: 
 platform: ruby
 authors:
@@ -15,7 +15,7 @@ date: 2012-01-12 00:00:00.000000000Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
-  requirement: &70177838647540 !ruby/object:Gem::Requirement
+  requirement: &70195014203460 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70177838647540
+  version_requirements: *70195014203460
 - !ruby/object:Gem::Dependency
   name: rest-client
-  requirement: &70177838646400 !ruby/object:Gem::Requirement
+  requirement: &70195014202720 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70177838646400
+  version_requirements: *70195014202720
 - !ruby/object:Gem::Dependency
   name: builder
-  requirement: &70177838644980 !ruby/object:Gem::Requirement
+  requirement: &70195014201980 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70177838644980
+  version_requirements: *70195014201980
 - !ruby/object:Gem::Dependency
   name: json
-  requirement: &70177838632900 !ruby/object:Gem::Requirement
+  requirement: &70195014201240 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -56,10 +56,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70177838632900
+  version_requirements: *70195014201240
 - !ruby/object:Gem::Dependency
   name: rspec
-  requirement: &70177838632000 !ruby/object:Gem::Requirement
+  requirement: &70195014200520 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -67,10 +67,10 @@ dependencies:
         version: 2.3.0
   type: :development
   prerelease: false
-  version_requirements: *70177838632000
+  version_requirements: *70195014200520
 - !ruby/object:Gem::Dependency
   name: cucumber
-  requirement: &70177838630660 !ruby/object:Gem::Requirement
+  requirement: &70195014192980 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *70177838630660
+  version_requirements: *70195014192980
 - !ruby/object:Gem::Dependency
   name: capybara
-  requirement: &70177838629900 !ruby/object:Gem::Requirement
+  requirement: &70195014192200 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *70177838629900
+  version_requirements: *70195014192200
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &70177838629120 !ruby/object:Gem::Requirement
+  requirement: &70195014191560 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -100,10 +100,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *70177838629120
+  version_requirements: *70195014191560
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &70177838628420 !ruby/object:Gem::Requirement
+  requirement: &70195014190980 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -111,10 +111,10 @@ dependencies:
         version: 1.6.4
   type: :development
   prerelease: false
-  version_requirements: *70177838628420
+  version_requirements: *70195014190980
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &70177838627820 !ruby/object:Gem::Requirement
+  requirement: &70195014190320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -122,10 +122,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *70177838627820
+  version_requirements: *70195014190320
 - !ruby/object:Gem::Dependency
   name: ruby-debug19
-  requirement: &70177838612920 !ruby/object:Gem::Requirement
+  requirement: &70195014189720 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -133,7 +133,7 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *70177838612920
+  version_requirements: *70195014189720
 description: The gem searches for scientific names in texts using socket servers running
   TaxonFinder (by Patrick Leary) and NetiNeti (by Lakshmi Manohar Akella)
 email: dmozzherin@gmail.com
@@ -180,7 +180,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -3919114826077496743
+      hash: 3702065529209434709
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: