name-spotter 0.0.4 → 0.0.5

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Files changed (4) hide show
  1. data/README.rdoc +29 -1
  2. data/VERSION +1 -1
  3. data/name-spotter.gemspec +1 -1
  4. metadata +24 -24
data/README.rdoc CHANGED
@@ -1,11 +1,39 @@
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  = name-spotter
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- Finds biodiversity scientific names in texts using TaxonFinder or NetiNeti libraries. This gem works with ruby >= 1.9.2
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+ Finds biodiversity scientific names in texts using TaxonFinder (by Patrick Leary) or NetiNeti (by Lakshmi Manohar Akella) libraries. This gem works with ruby >= 1.9.2
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  == Installation
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+ * Install the gem
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+
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  gem install name-spotter
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+ * Install and run TaxonFinder in a new terminal window
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+
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+ wget http://taxon-finder.googlecode.com/files/taxon-finder.tar.gz
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+ tar zxvf taxon-finder.tar.gz
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+ cd taxon-finder
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+ perl server.pl
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+
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+ * Install and run NetiNeti in a new terminal window
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+
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+ wget https://github.com/mbl-cli/NetiNeti/zipball/master
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+ unzip master
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+ cd cd mbl-cli-NetiNeti-*
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+
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+ #or
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+
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+ git clone git://github.com/mbl-cli/NetiNeti.git
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+ cd NetiNeti
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+
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+ #then
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+
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+ easy_install virtualenv
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+ easy_install tornado
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+ python neti_env.py virtualenvs/neti
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+ cp config/neti_http_config.cfg.example config/neti_http_config.cfg
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+ python neti_tornado_server.py
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+
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  == Usage
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  Fist you have to download TaxonFinder and NetiNeti services.
data/VERSION CHANGED
@@ -1 +1 @@
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- 0.0.4
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+ 0.0.5
data/name-spotter.gemspec CHANGED
@@ -5,7 +5,7 @@
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  Gem::Specification.new do |s|
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  s.name = "name-spotter"
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- s.version = "0.0.4"
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+ s.version = "0.0.5"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Anthony Goddard", "Chuck Ha", "Dmitry Mozzherin"]
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: name-spotter
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  version: !ruby/object:Gem::Version
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- version: 0.0.4
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+ version: 0.0.5
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  prerelease:
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  platform: ruby
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  authors:
@@ -15,7 +15,7 @@ date: 2012-01-12 00:00:00.000000000Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rake
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- requirement: &70177838647540 !ruby/object:Gem::Requirement
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+ requirement: &70195014203460 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70177838647540
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+ version_requirements: *70195014203460
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  - !ruby/object:Gem::Dependency
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  name: rest-client
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- requirement: &70177838646400 !ruby/object:Gem::Requirement
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+ requirement: &70195014202720 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70177838646400
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+ version_requirements: *70195014202720
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  - !ruby/object:Gem::Dependency
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  name: builder
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- requirement: &70177838644980 !ruby/object:Gem::Requirement
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+ requirement: &70195014201980 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70177838644980
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+ version_requirements: *70195014201980
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  - !ruby/object:Gem::Dependency
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  name: json
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- requirement: &70177838632900 !ruby/object:Gem::Requirement
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+ requirement: &70195014201240 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70177838632900
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+ version_requirements: *70195014201240
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  - !ruby/object:Gem::Dependency
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  name: rspec
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- requirement: &70177838632000 !ruby/object:Gem::Requirement
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+ requirement: &70195014200520 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
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  version: 2.3.0
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  type: :development
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  prerelease: false
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- version_requirements: *70177838632000
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+ version_requirements: *70195014200520
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  - !ruby/object:Gem::Dependency
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  name: cucumber
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- requirement: &70177838630660 !ruby/object:Gem::Requirement
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+ requirement: &70195014192980 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *70177838630660
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+ version_requirements: *70195014192980
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  - !ruby/object:Gem::Dependency
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  name: capybara
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- requirement: &70177838629900 !ruby/object:Gem::Requirement
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+ requirement: &70195014192200 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *70177838629900
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+ version_requirements: *70195014192200
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &70177838629120 !ruby/object:Gem::Requirement
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+ requirement: &70195014191560 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -100,10 +100,10 @@ dependencies:
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  version: 1.0.0
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  type: :development
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  prerelease: false
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- version_requirements: *70177838629120
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+ version_requirements: *70195014191560
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &70177838628420 !ruby/object:Gem::Requirement
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+ requirement: &70195014190980 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
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  version: 1.6.4
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  type: :development
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  prerelease: false
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- version_requirements: *70177838628420
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+ version_requirements: *70195014190980
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  - !ruby/object:Gem::Dependency
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  name: rcov
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- requirement: &70177838627820 !ruby/object:Gem::Requirement
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+ requirement: &70195014190320 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *70177838627820
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+ version_requirements: *70195014190320
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  - !ruby/object:Gem::Dependency
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  name: ruby-debug19
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- requirement: &70177838612920 !ruby/object:Gem::Requirement
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+ requirement: &70195014189720 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *70177838612920
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+ version_requirements: *70195014189720
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  description: The gem searches for scientific names in texts using socket servers running
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  TaxonFinder (by Patrick Leary) and NetiNeti (by Lakshmi Manohar Akella)
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  email: dmozzherin@gmail.com
@@ -180,7 +180,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  version: '0'
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  segments:
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  - 0
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- hash: -3919114826077496743
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+ hash: 3702065529209434709
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  none: false
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  requirements: