mzml 0.1.0

data/spec/spec.opts

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+--color

data/spec/spec_helper.rb

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+$LOAD_PATH.unshift(File.dirname(__FILE__))
+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
+require 'rubygems'
+require 'mzml'
+require 'spec'
+require 'spec/autorun'
+
+class Mgf < Struct.new(:title, :mz, :intensity); end
+
+def parse_mgf(fname)
+  mgf = Mgf.new(nil,[],[])
+  File.open(fname).each do |l|
+    l.chomp!
+    case l
+    when /^TITLE=(.+)/
+      mgf.title = $1
+    when /^\d/
+      m,i = l.split().map{|e| (e.to_f * 1000).to_i() / 1000.0 }
+      mgf.mz << m
+      mgf.intensity << i
+    end
+  end
+  return mgf
+end
+
+Spec::Runner.configure do |config|
+end

metadata

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+--- !ruby/object:Gem::Specification 
+name: mzml
+version: !ruby/object:Gem::Version 
+  version: 0.1.0
+platform: ruby
+authors: 
+- Angel Pizarro
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2009-12-06 00:00:00 +00:00
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: rspec
+  type: :development
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: 1.2.9
+    version: 
+- !ruby/object:Gem::Dependency 
+  name: nokogiri
+  type: :runtime
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: 1.3.3
+    version: 
+description: A non-validating mzML parser. MzML is a standard data format for representing mass spectrometry data.
+email: angel@delagoya.com
+executables: []
+
+extensions: []
+
+extra_rdoc_files: 
+- LICENSE
+- README.rdoc
+files: 
+- .document
+- .gitignore
+- .yardoc
+- LICENSE
+- README.rdoc
+- Rakefile
+- VERSION
+- lib/mzml.rb
+- mzml.gemspec
+- spec/mzml_spec.rb
+- spec/small.compressed.mzML
+- spec/small.mgf
+- spec/small.mzML
+- spec/spec.opts
+- spec/spec_helper.rb
+has_rdoc: true
+homepage: http://github.com/delagoya/mzml
+licenses: []
+
+post_install_message: 
+rdoc_options: 
+- --charset=UTF-8
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+requirements: []
+
+rubyforge_project: 
+rubygems_version: 1.3.5
+signing_key: 
+specification_version: 3
+summary: A non-validating mzML parser
+test_files: 
+- spec/mzml_spec.rb
+- spec/spec_helper.rb