mzml 0.1.0 → 0.2.0

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Files changed (11) hide show
  1. data/Rakefile +4 -4
  2. data/VERSION +1 -1
  3. data/bin/mzML2mgf.rb +53 -0
  4. data/lib/mzml.rb +28 -11
  5. data/mzml.gemspec +12 -9
  6. data/spec/mzml_spec.rb +33 -0
  7. data/spec/small.compressed.mzML +2107 -9043
  8. data/spec/small.mgf +102 -349
  9. data/spec/small.mzML +2121 -9046
  10. data/spec/spec_helper.rb +1 -1
  11. metadata +36 -20
data/spec/spec_helper.rb CHANGED
@@ -15,7 +15,7 @@ def parse_mgf(fname)
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  when /^TITLE=(.+)/
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  mgf.title = $1
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  when /^\d/
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- m,i = l.split().map{|e| (e.to_f * 1000).to_i() / 1000.0 }
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+ m,i = l.split(' ').map{|e| (e.to_f * 1000).to_i() / 1000.0 }
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  mgf.mz << m
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  mgf.intensity << i
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  end
metadata CHANGED
@@ -1,7 +1,12 @@
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  --- !ruby/object:Gem::Specification
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  name: mzml
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  version: !ruby/object:Gem::Version
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- version: 0.1.0
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+ prerelease: false
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+ segments:
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+ - 0
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+ - 2
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+ - 0
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+ version: 0.2.0
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  platform: ruby
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  authors:
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  - Angel Pizarro
@@ -9,33 +14,41 @@ autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2009-12-06 00:00:00 +00:00
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- default_executable:
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+ date: 2010-04-23 00:00:00 +00:00
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+ default_executable: mzML2mgf.rb
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rspec
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- type: :development
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- version_requirement:
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- version_requirements: !ruby/object:Gem::Requirement
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+ prerelease: false
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+ requirement: &id001 !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - "="
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  - !ruby/object:Gem::Version
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- version: 1.2.9
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- version:
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+ segments:
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+ - 1
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+ - 3
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+ - 0
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+ version: 1.3.0
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+ type: :development
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+ version_requirements: *id001
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  - !ruby/object:Gem::Dependency
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  name: nokogiri
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- type: :runtime
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- version_requirement:
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- version_requirements: !ruby/object:Gem::Requirement
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+ prerelease: false
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+ requirement: &id002 !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - "="
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  - !ruby/object:Gem::Version
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- version: 1.3.3
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- version:
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+ segments:
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+ - 1
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+ - 4
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+ - 1
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+ version: 1.4.1
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+ type: :runtime
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+ version_requirements: *id002
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  description: A non-validating mzML parser. MzML is a standard data format for representing mass spectrometry data.
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  email: angel@delagoya.com
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- executables: []
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-
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+ executables:
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+ - mzML2mgf.rb
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  extensions: []
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  extra_rdoc_files:
@@ -49,6 +62,7 @@ files:
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  - README.rdoc
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  - Rakefile
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  - VERSION
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+ - bin/mzML2mgf.rb
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  - lib/mzml.rb
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  - mzml.gemspec
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  - spec/mzml_spec.rb
@@ -70,18 +84,20 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ segments:
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+ - 0
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  version: "0"
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- version:
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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+ segments:
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+ - 0
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  version: "0"
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- version:
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 1.3.5
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+ rubygems_version: 1.3.6
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  signing_key:
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  specification_version: 3
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  summary: A non-validating mzML parser