myexperiment-rest 0.2.6

Sign up to get free protection for your applications and to get access to all the features.
Files changed (55) hide show
  1. data/CHANGES +9 -0
  2. data/LICENSE +23 -0
  3. data/README +33 -0
  4. data/Rakefile +45 -0
  5. data/bin/get_workflow_data.rb +31 -0
  6. data/doc/classes/MyExperimentREST.html +113 -0
  7. data/doc/classes/MyExperimentREST/IOData.html +169 -0
  8. data/doc/classes/MyExperimentREST/IOData.src/M000003.html +20 -0
  9. data/doc/classes/MyExperimentREST/ReadWorkflow.html +184 -0
  10. data/doc/classes/MyExperimentREST/ReadWorkflow.src/M000002.html +39 -0
  11. data/doc/classes/MyExperimentREST/ReadWorkflow.src/M000005.html +41 -0
  12. data/doc/classes/MyExperimentREST/TavernaIOData.html +167 -0
  13. data/doc/classes/MyExperimentREST/TavernaIOData.src/M000006.html +20 -0
  14. data/doc/classes/MyExperimentREST/TavernaIOData.src/M000007.html +20 -0
  15. data/doc/classes/MyExperimentREST/TavernaWorkflow.html +209 -0
  16. data/doc/classes/MyExperimentREST/TavernaWorkflow.src/M000005.html +23 -0
  17. data/doc/classes/MyExperimentREST/TavernaWorkflow.src/M000006.html +22 -0
  18. data/doc/classes/MyExperimentREST/Workflow.html +172 -0
  19. data/doc/classes/MyExperimentREST/Workflow.src/M000001.html +21 -0
  20. data/doc/classes/MyExperimentREST/Workflows.html +167 -0
  21. data/doc/classes/MyExperimentREST/Workflows.src/M000004.html +41 -0
  22. data/doc/classes/TestReadWorkflow.html +167 -0
  23. data/doc/classes/TestReadWorkflow.src/M000001.html +18 -0
  24. data/doc/classes/TestReadWorkflow.src/M000002.html +24 -0
  25. data/doc/classes/TestReadWorkflow.src/M000003.html +20 -0
  26. data/doc/classes/TestReadWorkflow.src/M000004.html +20 -0
  27. data/doc/created.rid +1 -0
  28. data/doc/files/bin/get_workflow_data_rb.html +116 -0
  29. data/doc/files/lib/myexperiment-rest/my_experiment_rest_rb.html +110 -0
  30. data/doc/files/lib/myexperiment-rest/myexperiment_rest_rb.html +110 -0
  31. data/doc/files/lib/myexperiment-rest_rb.html +108 -0
  32. data/doc/files/test/test_read_workflow_rb.html +122 -0
  33. data/doc/fr_class_index.html +31 -0
  34. data/doc/fr_file_index.html +29 -0
  35. data/doc/fr_method_index.html +32 -0
  36. data/doc/index.html +24 -0
  37. data/doc/rdoc-style.css +208 -0
  38. data/doc/rdoc/classes/MyExperimentREST.html +117 -0
  39. data/doc/rdoc/classes/MyExperimentREST/TavernaIOData.html +178 -0
  40. data/doc/rdoc/classes/MyExperimentREST/TavernaWorkflow.html +223 -0
  41. data/doc/rdoc/classes/MyExperimentREST/Workflows.html +199 -0
  42. data/doc/rdoc/created.rid +1 -0
  43. data/doc/rdoc/files/CHANGES.html +121 -0
  44. data/doc/rdoc/files/LICENSE.html +133 -0
  45. data/doc/rdoc/files/README.html +148 -0
  46. data/doc/rdoc/files/lib/myexperiment-rest/myexperiment_rest_rb.html +110 -0
  47. data/doc/rdoc/files/lib/myexperiment-rest_rb.html +108 -0
  48. data/doc/rdoc/fr_class_index.html +30 -0
  49. data/doc/rdoc/fr_file_index.html +31 -0
  50. data/doc/rdoc/fr_method_index.html +29 -0
  51. data/doc/rdoc/index.html +24 -0
  52. data/doc/rdoc/rdoc-style.css +208 -0
  53. data/lib/myexperiment-rest.rb +5 -0
  54. data/lib/myexperiment-rest/myexperiment_rest.rb +146 -0
  55. metadata +133 -0
data/doc/files/test/test_read_workflow_rb.html ADDED
@@ -0,0 +1,122 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
7
+ <head>
8
+ <title>File: test_read_workflow.rb</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
11
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
12
+ <script type="text/javascript">
13
+ // <![CDATA[
14
+
15
+ function popupCode( url ) {
16
+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
17
+ }
18
+
19
+ function toggleCode( id ) {
20
+ if ( document.getElementById )
21
+ elem = document.getElementById( id );
22
+ else if ( document.all )
23
+ elem = eval( "document.all." + id );
24
+ else
25
+ return false;
26
+
27
+ elemStyle = elem.style;
28
+
29
+ if ( elemStyle.display != "block" ) {
30
+ elemStyle.display = "block"
31
+ } else {
32
+ elemStyle.display = "none"
33
+ }
34
+
35
+ return true;
36
+ }
37
+
38
+ // Make codeblocks hidden by default
39
+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
40
+
41
+ // ]]>
42
+ </script>
43
+
44
+ </head>
45
+ <body>
46
+
47
+
48
+
49
+ <div id="fileHeader">
50
+ <h1>test_read_workflow.rb</h1>
51
+ <table class="header-table">
52
+ <tr class="top-aligned-row">
53
+ <td><strong>Path:</strong></td>
54
+ <td>test/test_read_workflow.rb
55
+ </td>
56
+ </tr>
57
+ <tr class="top-aligned-row">
58
+ <td><strong>Last Update:</strong></td>
59
+ <td>Thu May 19 18:20:35 +0200 2011</td>
60
+ </tr>
61
+ </table>
62
+ </div>
63
+ <!-- banner header -->
64
+
65
+ <div id="bodyContent">
66
+
67
+
68
+
69
+ <div id="contextContent">
70
+
71
+ <div id="description">
72
+ <p>
73
+ put lib dir in load path
74
+ </p>
75
+
76
+ </div>
77
+
78
+ <div id="requires-list">
79
+ <h3 class="section-bar">Required files</h3>
80
+
81
+ <div class="name-list">
82
+ test/unit&nbsp;&nbsp;
83
+ myexperiment-rest&nbsp;&nbsp;
84
+ </div>
85
+ </div>
86
+
87
+ </div>
88
+
89
+
90
+ </div>
91
+
92
+
93
+ <!-- if includes -->
94
+ <div id="includes">
95
+ <h3 class="section-bar">Included Modules</h3>
96
+
97
+ <div id="includes-list">
98
+ <span class="include-name"><a href="../../classes/MyExperimentREST.html">MyExperimentREST</a></span>
99
+ </div>
100
+ </div>
101
+
102
+ <div id="section">
103
+
104
+
105
+
106
+
107
+
108
+
109
+
110
+
111
+ <!-- if method_list -->
112
+
113
+
114
+ </div>
115
+
116
+
117
+ <div id="validator-badges">
118
+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
119
+ </div>
120
+
121
+ </body>
122
+ </html>
data/doc/fr_class_index.html ADDED
@@ -0,0 +1,31 @@
1
+
2
+ <?xml version="1.0" encoding="iso-8859-1"?>
3
+ <!DOCTYPE html
4
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
5
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
6
+
7
+ <!--
8
+
9
+ Classes
10
+
11
+ -->
12
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
13
+ <head>
14
+ <title>Classes</title>
15
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
16
+ <link rel="stylesheet" href="rdoc-style.css" type="text/css" />
17
+ <base target="docwin" />
18
+ </head>
19
+ <body>
20
+ <div id="index">
21
+ <h1 class="section-bar">Classes</h1>
22
+ <div id="index-entries">
23
+ <a href="classes/MyExperimentREST.html">MyExperimentREST</a><br />
24
+ <a href="classes/MyExperimentREST/TavernaIOData.html">MyExperimentREST::TavernaIOData</a><br />
25
+ <a href="classes/MyExperimentREST/TavernaWorkflow.html">MyExperimentREST::TavernaWorkflow</a><br />
26
+ <a href="classes/MyExperimentREST/Workflows.html">MyExperimentREST::Workflows</a><br />
27
+ <a href="classes/TestReadWorkflow.html">TestReadWorkflow</a><br />
28
+ </div>
29
+ </div>
30
+ </body>
31
+ </html>
data/doc/fr_file_index.html ADDED
@@ -0,0 +1,29 @@
1
+
2
+ <?xml version="1.0" encoding="iso-8859-1"?>
3
+ <!DOCTYPE html
4
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
5
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
6
+
7
+ <!--
8
+
9
+ Files
10
+
11
+ -->
12
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
13
+ <head>
14
+ <title>Files</title>
15
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
16
+ <link rel="stylesheet" href="rdoc-style.css" type="text/css" />
17
+ <base target="docwin" />
18
+ </head>
19
+ <body>
20
+ <div id="index">
21
+ <h1 class="section-bar">Files</h1>
22
+ <div id="index-entries">
23
+ <a href="files/bin/get_workflow_data_rb.html">bin/get_workflow_data.rb</a><br />
24
+ <a href="files/lib/myexperiment-rest/myexperiment_rest_rb.html">lib/myexperiment-rest/myexperiment_rest.rb</a><br />
25
+ <a href="files/test/test_read_workflow_rb.html">test/test_read_workflow.rb</a><br />
26
+ </div>
27
+ </div>
28
+ </body>
29
+ </html>
data/doc/fr_method_index.html ADDED
@@ -0,0 +1,32 @@
1
+
2
+ <?xml version="1.0" encoding="iso-8859-1"?>
3
+ <!DOCTYPE html
4
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
5
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
6
+
7
+ <!--
8
+
9
+ Methods
10
+
11
+ -->
12
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
13
+ <head>
14
+ <title>Methods</title>
15
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
16
+ <link rel="stylesheet" href="rdoc-style.css" type="text/css" />
17
+ <base target="docwin" />
18
+ </head>
19
+ <body>
20
+ <div id="index">
21
+ <h1 class="section-bar">Methods</h1>
22
+ <div id="index-entries">
23
+ <a href="classes/MyExperimentREST/TavernaIOData.html#M000006">new (MyExperimentREST::TavernaIOData)</a><br />
24
+ <a href="classes/MyExperimentREST/TavernaWorkflow.html#M000005">new (MyExperimentREST::TavernaWorkflow)</a><br />
25
+ <a href="classes/MyExperimentREST/Workflows.html#M000004">read (MyExperimentREST::Workflows)</a><br />
26
+ <a href="classes/TestReadWorkflow.html#M000001">setup (TestReadWorkflow)</a><br />
27
+ <a href="classes/TestReadWorkflow.html#M000002">test_workflow_values (TestReadWorkflow)</a><br />
28
+ <a href="classes/TestReadWorkflow.html#M000003">test_workflows_ios (TestReadWorkflow)</a><br />
29
+ </div>
30
+ </div>
31
+ </body>
32
+ </html>
data/doc/index.html ADDED
@@ -0,0 +1,24 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
5
+
6
+ <!--
7
+
8
+ RDoc Documentation
9
+
10
+ -->
11
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
12
+ <head>
13
+ <title>RDoc Documentation</title>
14
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
15
+ </head>
16
+ <frameset rows="20%, 80%">
17
+ <frameset cols="25%,35%,45%">
18
+ <frame src="fr_file_index.html" title="Files" name="Files" />
19
+ <frame src="fr_class_index.html" name="Classes" />
20
+ <frame src="fr_method_index.html" name="Methods" />
21
+ </frameset>
22
+ <frame src="files/test/test_read_workflow_rb.html" name="docwin" />
23
+ </frameset>
24
+ </html>
data/doc/rdoc-style.css ADDED
@@ -0,0 +1,208 @@
1
+
2
+ body {
3
+ font-family: Verdana,Arial,Helvetica,sans-serif;
4
+ font-size: 90%;
5
+ margin: 0;
6
+ margin-left: 40px;
7
+ padding: 0;
8
+ background: white;
9
+ }
10
+
11
+ h1,h2,h3,h4 { margin: 0; color: #efefef; background: transparent; }
12
+ h1 { font-size: 150%; }
13
+ h2,h3,h4 { margin-top: 1em; }
14
+
15
+ a { background: #eef; color: #039; text-decoration: none; }
16
+ a:hover { background: #039; color: #eef; }
17
+
18
+ /* Override the base stylesheet's Anchor inside a table cell */
19
+ td > a {
20
+ background: transparent;
21
+ color: #039;
22
+ text-decoration: none;
23
+ }
24
+
25
+ /* and inside a section title */
26
+ .section-title > a {
27
+ background: transparent;
28
+ color: #eee;
29
+ text-decoration: none;
30
+ }
31
+
32
+ /* === Structural elements =================================== */
33
+
34
+ div#index {
35
+ margin: 0;
36
+ margin-left: -40px;
37
+ padding: 0;
38
+ font-size: 90%;
39
+ }
40
+
41
+
42
+ div#index a {
43
+ margin-left: 0.7em;
44
+ }
45
+
46
+ div#index .section-bar {
47
+ margin-left: 0px;
48
+ padding-left: 0.7em;
49
+ background: #ccc;
50
+ font-size: small;
51
+ }
52
+
53
+
54
+ div#classHeader, div#fileHeader {
55
+ width: auto;
56
+ color: white;
57
+ padding: 0.5em 1.5em 0.5em 1.5em;
58
+ margin: 0;
59
+ margin-left: -40px;
60
+ border-bottom: 3px solid #006;
61
+ }
62
+
63
+ div#classHeader a, div#fileHeader a {
64
+ background: inherit;
65
+ color: white;
66
+ }
67
+
68
+ div#classHeader td, div#fileHeader td {
69
+ background: inherit;
70
+ color: white;
71
+ }
72
+
73
+
74
+ div#fileHeader {
75
+ background: #057;
76
+ }
77
+
78
+ div#classHeader {
79
+ background: #048;
80
+ }
81
+
82
+
83
+ .class-name-in-header {
84
+ font-size: 180%;
85
+ font-weight: bold;
86
+ }
87
+
88
+
89
+ div#bodyContent {
90
+ padding: 0 1.5em 0 1.5em;
91
+ }
92
+
93
+ div#description {
94
+ padding: 0.5em 1.5em;
95
+ background: #efefef;
96
+ border: 1px dotted #999;
97
+ }
98
+
99
+ div#description h1,h2,h3,h4,h5,h6 {
100
+ color: #125;;
101
+ background: transparent;
102
+ }
103
+
104
+ div#validator-badges {
105
+ text-align: center;
106
+ }
107
+ div#validator-badges img { border: 0; }
108
+
109
+ div#copyright {
110
+ color: #333;
111
+ background: #efefef;
112
+ font: 0.75em sans-serif;
113
+ margin-top: 5em;
114
+ margin-bottom: 0;
115
+ padding: 0.5em 2em;
116
+ }
117
+
118
+
119
+ /* === Classes =================================== */
120
+
121
+ table.header-table {
122
+ color: white;
123
+ font-size: small;
124
+ }
125
+
126
+ .type-note {
127
+ font-size: small;
128
+ color: #DEDEDE;
129
+ }
130
+
131
+ .xxsection-bar {
132
+ background: #eee;
133
+ color: #333;
134
+ padding: 3px;
135
+ }
136
+
137
+ .section-bar {
138
+ color: #333;
139
+ border-bottom: 1px solid #999;
140
+ margin-left: -20px;
141
+ }
142
+
143
+
144
+ .section-title {
145
+ background: #79a;
146
+ color: #eee;
147
+ padding: 3px;
148
+ margin-top: 2em;
149
+ margin-left: -30px;
150
+ border: 1px solid #999;
151
+ }
152
+
153
+ .top-aligned-row { vertical-align: top }
154
+ .bottom-aligned-row { vertical-align: bottom }
155
+
156
+ /* --- Context section classes ----------------------- */
157
+
158
+ .context-row { }
159
+ .context-item-name { font-family: monospace; font-weight: bold; color: black; }
160
+ .context-item-value { font-size: small; color: #448; }
161
+ .context-item-desc { color: #333; padding-left: 2em; }
162
+
163
+ /* --- Method classes -------------------------- */
164
+ .method-detail {
165
+ background: #efefef;
166
+ padding: 0;
167
+ margin-top: 0.5em;
168
+ margin-bottom: 1em;
169
+ border: 1px dotted #ccc;
170
+ }
171
+ .method-heading {
172
+ color: black;
173
+ background: #ccc;
174
+ border-bottom: 1px solid #666;
175
+ padding: 0.2em 0.5em 0 0.5em;
176
+ }
177
+ .method-signature { color: black; background: inherit; }
178
+ .method-name { font-weight: bold; }
179
+ .method-args { font-style: italic; }
180
+ .method-description { padding: 0 0.5em 0 0.5em; }
181
+
182
+ /* --- Source code sections -------------------- */
183
+
184
+ a.source-toggle { font-size: 90%; }
185
+ div.method-source-code {
186
+ background: #262626;
187
+ color: #ffdead;
188
+ margin: 1em;
189
+ padding: 0.5em;
190
+ border: 1px dashed #999;
191
+ overflow: hidden;
192
+ }
193
+
194
+ div.method-source-code pre { color: #ffdead; overflow: hidden; }
195
+
196
+ /* --- Ruby keyword styles --------------------- */
197
+
198
+ .standalone-code { background: #221111; color: #ffdead; overflow: hidden; }
199
+
200
+ .ruby-constant { color: #7fffd4; background: transparent; }
201
+ .ruby-keyword { color: #00ffff; background: transparent; }
202
+ .ruby-ivar { color: #eedd82; background: transparent; }
203
+ .ruby-operator { color: #00ffee; background: transparent; }
204
+ .ruby-identifier { color: #ffdead; background: transparent; }
205
+ .ruby-node { color: #ffa07a; background: transparent; }
206
+ .ruby-comment { color: #b22222; font-weight: bold; background: transparent; }
207
+ .ruby-regexp { color: #ffa07a; background: transparent; }
208
+ .ruby-value { color: #7fffd4; background: transparent; }