myexperiment-rest 0.2.6 → 0.2.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/CHANGES +6 -1
- data/README +3 -3
- data/Rakefile +3 -2
- data/bin/get_workflow_data.rb +3 -5
- data/doc/created.rid +1 -1
- data/doc/files/README.html +148 -0
- data/doc/fr_class_index.html +0 -5
- data/doc/fr_file_index.html +1 -3
- data/doc/fr_method_index.html +0 -6
- data/doc/index.html +1 -1
- data/doc/rdoc/created.rid +1 -1
- data/doc/rdoc/files/CHANGES.html +11 -2
- data/doc/rdoc/files/README.html +5 -7
- metadata +26 -7
data/CHANGES
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= Changes log for the MyExperiment via REST Gem
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== Version 0.2.7
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* Minor clean up of get_workflow_data.rb and documentation.
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* Added libxml-ruby dependency in gem specification.
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== Version 0.2.6
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* Added dependency in gem specification.
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* Added rest-client dependency version in gem specification.
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== Version 0.2.5
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data/README
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= MyExperiment Interaction via REST
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Authors:: Konstantinos Karasavvas
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Gem Version:: 0.2.
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Gem Version:: 0.2.7
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Contact:: mailto:kostas.karasavvas@nbic.nl
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Licence:: MIT (See LICENCE or http://www.opensource.org/licenses/mit-license)
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Copyright:: (c) 2010 Netherlands Bioinformatics Centre, The Netherlands
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== Installation
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[sudo] gem install myexperiment-rest
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[sudo] gem install myexperiment-rest
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== References
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myExperiment:: http://www.myexperiment.org
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myExperiment:: http://www.myexperiment.org
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data/Rakefile
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spec = Gem::Specification.new do |s|
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s.name = 'myexperiment-rest'
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s.version = '0.2.
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s.version = '0.2.7'
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s.extra_rdoc_files = ['README', 'LICENSE', 'CHANGES']
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s.summary = 'This is a simple library to access data on myExperiment via its REST API. Currently supports a subset of the workflow information available.'
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s.description = s.summary
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s.files = %w(LICENSE README CHANGES Rakefile) + Dir.glob("{bin,lib,doc,spec}/**/*")
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s.require_path = "lib"
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s.bindir = "bin"
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s.add_dependency 'rest-client'
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s.add_dependency 'rest-client', '>= 1.6.3'
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s.add_dependency 'libxml-ruby', '>= 2.0.5'
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end
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Rake::GemPackageTask.new(spec) do |p|
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data/bin/get_workflow_data.rb
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include MyExperimentREST
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wkf = Workflows.new.read(ARGV[0])
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end
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my_exp_workflow = ARGV[0] || "http://www.myexperiment.org/workflows/74/download/bioaid_proteindiscovery_221429.xml?version=3"
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wkf = Workflows.new.read(my_exp_workflow)
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puts wkf.input_type
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data/doc/created.rid
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Thu,
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Thu, 21 Jul 2011 18:40:11 +0200
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<?xml version="1.0" encoding="iso-8859-1"?>
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<!DOCTYPE html
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<head>
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<title>File: README</title>
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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<meta http-equiv="Content-Script-Type" content="text/javascript" />
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<link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
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<script type="text/javascript">
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// <![CDATA[
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function popupCode( url ) {
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window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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}
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function toggleCode( id ) {
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if ( document.getElementById )
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elem = document.getElementById( id );
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else if ( document.all )
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elem = eval( "document.all." + id );
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else
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return false;
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elemStyle = elem.style;
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if ( elemStyle.display != "block" ) {
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elemStyle.display = "block"
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} else {
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elemStyle.display = "none"
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}
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return true;
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}
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// Make codeblocks hidden by default
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document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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// ]]>
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</script>
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</head>
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<body>
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<div id="fileHeader">
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<h1>README</h1>
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<table class="header-table">
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<tr class="top-aligned-row">
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<td><strong>Path:</strong></td>
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<td>README
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</td>
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</tr>
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<tr class="top-aligned-row">
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<td><strong>Last Update:</strong></td>
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<td>Wed Jul 20 19:31:37 +0200 2011</td>
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</tr>
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</table>
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</div>
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<!-- banner header -->
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<div id="bodyContent">
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<div id="contextContent">
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<div id="description">
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<h1>MyExperiment Interaction via REST</h1>
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<table>
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<tr><td valign="top">Authors:</td><td>Konstantinos Karasavvas
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</td></tr>
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<tr><td valign="top">Gem Version:</td><td>0.2.6
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</td></tr>
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<tr><td valign="top">Contact:</td><td><a href="mailto:kostas.karasavvas@nbic.nl">kostas.karasavvas@nbic.nl</a>
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</td></tr>
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<tr><td valign="top">Licence:</td><td>MIT (See LICENCE or <a
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href="http://www.opensource.org/licenses/mit-license">www.opensource.org/licenses/mit-license</a>)
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</td></tr>
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<tr><td valign="top">Copyright:</td><td>(c) 2010 Netherlands Bioinformatics Centre, The Netherlands
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</td></tr>
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</table>
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<h2>Description</h2>
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<p>
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This is a simple library to access data on myExperiment via its REST API.
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</p>
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<h2>Features/Problems</h2>
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<p>
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Only a subset of myExperiment workflow data can be currently accessed.
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</p>
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<h2>Usage</h2>
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<p>
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There is an example script inside the <tt>bin</tt> directory that
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demonstrates how you can use the library.
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</p>
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<h2>Installation</h2>
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<dl>
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<dt>sudo</dt><dd>gem install myexperiment-rest
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</dd>
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</dl>
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<h2>References</h2>
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<table>
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<tr><td valign="top">myExperiment:</td><td><a href="http://www.myexperiment.org">www.myexperiment.org</a>
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</table>
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<!-- if includes -->
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<!-- if method_list -->
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</div>
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<div id="validator-badges">
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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</div>
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</body>
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</html>
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data/doc/fr_class_index.html
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<div id="index">
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<h1 class="section-bar">Classes</h1>
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<div id="index-entries">
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<a href="classes/MyExperimentREST.html">MyExperimentREST</a><br />
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<a href="classes/MyExperimentREST/TavernaIOData.html">MyExperimentREST::TavernaIOData</a><br />
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<a href="classes/MyExperimentREST/TavernaWorkflow.html">MyExperimentREST::TavernaWorkflow</a><br />
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<a href="classes/MyExperimentREST/Workflows.html">MyExperimentREST::Workflows</a><br />
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data/doc/fr_file_index.html
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<h1 class="section-bar">Files</h1>
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<a href="files/
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data/doc/fr_method_index.html
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<a href="classes/MyExperimentREST/TavernaIOData.html#M000006">new (MyExperimentREST::TavernaIOData)</a><br />
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<a href="classes/MyExperimentREST/TavernaWorkflow.html#M000005">new (MyExperimentREST::TavernaWorkflow)</a><br />
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Fri, 22 Jul 2011 12:32:40 +0200
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data/doc/rdoc/files/CHANGES.html
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<tr><td valign="top">Gem Version:</td><td>0.2.
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77
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+
<tr><td valign="top">Gem Version:</td><td>0.2.7
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78
78
|
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79
79
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</td></tr>
|
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80
80
|
<tr><td valign="top">Contact:</td><td><a href="mailto:kostas.karasavvas@nbic.nl">kostas.karasavvas@nbic.nl</a>
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|
@@ -102,11 +102,9 @@ There is an example script inside the <tt>bin</tt> directory that
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102
102
|
demonstrates how you can use the library.
|
|
103
103
|
</p>
|
|
104
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|
<h2>Installation</h2>
|
|
105
|
-
<
|
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106
|
-
|
|
107
|
-
|
|
108
|
-
</dd>
|
|
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|
-
</dl>
|
|
105
|
+
<pre>
|
|
106
|
+
[sudo] gem install myexperiment-rest
|
|
107
|
+
</pre>
|
|
110
108
|
<h2>References</h2>
|
|
111
109
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<table>
|
|
112
110
|
<tr><td valign="top">myExperiment:</td><td><a href="http://www.myexperiment.org">www.myexperiment.org</a>
|
metadata
CHANGED
|
@@ -1,13 +1,13 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: myexperiment-rest
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
hash:
|
|
4
|
+
hash: 25
|
|
5
5
|
prerelease:
|
|
6
6
|
segments:
|
|
7
7
|
- 0
|
|
8
8
|
- 2
|
|
9
|
-
-
|
|
10
|
-
version: 0.2.
|
|
9
|
+
- 7
|
|
10
|
+
version: 0.2.7
|
|
11
11
|
platform: ruby
|
|
12
12
|
authors:
|
|
13
13
|
- Konstantinos Karasavvas
|
|
@@ -15,7 +15,7 @@ autorequire:
|
|
|
15
15
|
bindir: bin
|
|
16
16
|
cert_chain: []
|
|
17
17
|
|
|
18
|
-
date: 2011-07-
|
|
18
|
+
date: 2011-07-22 00:00:00 Z
|
|
19
19
|
dependencies:
|
|
20
20
|
- !ruby/object:Gem::Dependency
|
|
21
21
|
name: rest-client
|
|
@@ -25,12 +25,30 @@ dependencies:
|
|
|
25
25
|
requirements:
|
|
26
26
|
- - ">="
|
|
27
27
|
- !ruby/object:Gem::Version
|
|
28
|
-
hash:
|
|
28
|
+
hash: 9
|
|
29
29
|
segments:
|
|
30
|
-
-
|
|
31
|
-
|
|
30
|
+
- 1
|
|
31
|
+
- 6
|
|
32
|
+
- 3
|
|
33
|
+
version: 1.6.3
|
|
32
34
|
type: :runtime
|
|
33
35
|
version_requirements: *id001
|
|
36
|
+
- !ruby/object:Gem::Dependency
|
|
37
|
+
name: libxml-ruby
|
|
38
|
+
prerelease: false
|
|
39
|
+
requirement: &id002 !ruby/object:Gem::Requirement
|
|
40
|
+
none: false
|
|
41
|
+
requirements:
|
|
42
|
+
- - ">="
|
|
43
|
+
- !ruby/object:Gem::Version
|
|
44
|
+
hash: 5
|
|
45
|
+
segments:
|
|
46
|
+
- 2
|
|
47
|
+
- 0
|
|
48
|
+
- 5
|
|
49
|
+
version: 2.0.5
|
|
50
|
+
type: :runtime
|
|
51
|
+
version_requirements: *id002
|
|
34
52
|
description: This is a simple library to access data on myExperiment via its REST API. Currently supports a subset of the workflow information available.
|
|
35
53
|
email: kostas.karasavvas@nbic.nl
|
|
36
54
|
executables:
|
|
@@ -76,6 +94,7 @@ files:
|
|
|
76
94
|
- doc/index.html
|
|
77
95
|
- doc/files/test/test_read_workflow_rb.html
|
|
78
96
|
- doc/files/bin/get_workflow_data_rb.html
|
|
97
|
+
- doc/files/README.html
|
|
79
98
|
- doc/files/lib/myexperiment-rest/my_experiment_rest_rb.html
|
|
80
99
|
- doc/files/lib/myexperiment-rest/myexperiment_rest_rb.html
|
|
81
100
|
- doc/files/lib/myexperiment-rest_rb.html
|