mutations_caller_pipeline 0.0.2 → 0.0.3

data/bin/mutations_caller_pipeline

@@ -0,0 +1,4 @@
+#!/usr/bin/env ruby
+
+require 'mutations_caller_pipeline'
+MutationsCallerPipeline.hi

data/lib/mutations_caller_pipeline.rb

@@ -0,0 +1,10 @@
+class MutationsCallerPipeline
+  def self.hi
+    "Hello World!"
+  end
+end
+
+require "mutations_caller_pipeline/bwa_caller"
+require "mutations_caller_pipeline/gatk_caller"
+require "mutations_caller_pipeline/samtools_indexing"
+require "mutations_caller_pipeline/location_file"

data/test/test_mutations_caller_pipeline.rb

@@ -0,0 +1,24 @@
+require 'test/unit'
+require 'mutations_caller_pipeline'
+
+class MutationsCallerPipelineTest < Test::Unit::TestCase
+  def test_hi
+    assert_equal  "Hello World!", MutationsCallerPipeline.hi
+  end
+
+  def test_bwa_caller
+
+  end
+
+  def test_samtools_indexing
+
+  end
+
+  def test_gatk_caller
+
+  end
+
+  def test_create_location_file
+
+  end
+end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: mutations_caller_pipeline
 version: !ruby/object:Gem::Version
-  version: 0.0.2
+  version: 0.0.3
   prerelease: 
 platform: ruby
 authors:
@@ -14,10 +14,14 @@ dependencies: []
 description: Using BWA to align and GATK to call the bases
 email:
 - katharinaehayer@gmail.com
-executables: []
+executables:
+- mutations_caller_pipeline
 extensions: []
 extra_rdoc_files: []
-files: []
+files:
+- lib/mutations_caller_pipeline.rb
+- test/test_mutations_caller_pipeline.rb
+- bin/mutations_caller_pipeline
 homepage: https://github.com/khayer/mutations_caller_pipeline
 licenses: []
 post_install_message: 
@@ -42,4 +46,5 @@ rubygems_version: 1.8.15
 signing_key: 
 specification_version: 3
 summary: Call Mutations for files.fq
-test_files: []
+test_files:
+- test/test_mutations_caller_pipeline.rb