mumuki-r-runner 0.1.0

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checksums.yaml ADDED
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+ ---
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+ SHA256:
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+ metadata.gz: 16dac79ec3a5bf8a0f39be4ea303b2a2ce76c6e880740ce6506b0f7d34900cd8
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+ data.tar.gz: 61edafb16a21bbf9f4e8c205dd12aa563512c0a1d1006f710f6c19d50d1595ac
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+ SHA512:
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+ metadata.gz: b3994020d6d9e97170d7735d7d79c135f32527d2b77d10113a5026d531dd35f5087d7eff923717d85598a46d688e6c73a4468a957428954316f8beaa7730fda5
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+ data.tar.gz: 6dddb828be0def8f2f9d65a3c152d4be2c6f8cc2e26526b894dbffd4eab117d216514e39b27a4e555b54eba4b67125f9b39d032423006f78ede02a611f2a5987
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+ class RMetadataHook < Mumukit::Hook
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+ def metadata
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+ {language: {
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+ name: 'r',
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+ icon: {type: 'devicon', name: 'r'},
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+ version: '3.6.1',
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+ extension: 'R',
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+ ace_mode: 'R'
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+ },
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+ test_framework: {
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+ name: 'testthat',
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+ version: '2.3.1', # FIXME fix version using devtools
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+ test_extension: '.R',
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+ template: <<R
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+ test_that("{{ test_template_sample_description }}", {
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+ expect_true( TRUE )
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+ })
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+ R
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+ }}
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+ end
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+ end
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+
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+
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+
data/lib/query_hook.rb ADDED
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+ class RQueryHook < Mumukit::Templates::FileHook
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+ with_error_patterns
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+ isolated true
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+
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+ def tempfile_extension
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+ '.R'
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+ end
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+
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+ def compile_file_content(r)
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+ "#{compile_file_header(r)}\n#{compile_query(r.query)}"
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+ end
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+
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+ def compile_file_header(r)
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+ <<R
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+ #{r.extra}
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+
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+ #{r.content}
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+
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+ #{compile_cookie(r.cookie)}
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+ R
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+ end
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+
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+ def compile_query(query)
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+ query
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+ end
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+
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+ def compile_cookie(cookie)
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+ return if cookie.blank?
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+
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+ compile_statements(cookie).join "\n"
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+ end
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+
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+ def command_line(filename)
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+ "Rscript #{filename}"
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+ end
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+
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+ private
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+
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+ def compile_statements(cookie)
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+ cookie.map { |query| "invisible(tryCatch({ #{query} }, error = function(e) {}))" }
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+ end
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+
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+ def error_patterns
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+ [
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+ Mumukit::ErrorPattern::Errored.new(/(?=Execution halted\n$)/)
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+ ]
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+ end
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+ end
data/lib/r_runner.rb ADDED
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+ require 'mumukit'
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+ require 'nokogiri'
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+
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+ Mumukit.runner_name = 'r'
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+ Mumukit.configure do |config|
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+ config.docker_image = 'mumuki/mumuki-r-worker:0.1'
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+ config.structured = true
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+ config.stateful = true
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+ end
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+
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+ require_relative './version'
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+ require_relative './metadata_hook'
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+ require_relative './test_hook'
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+ require_relative './query_hook'
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+ require_relative './try_hook'
data/lib/test_hook.rb ADDED
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+ class RTestHook < Mumukit::Templates::FileHook
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+ isolated true
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+ structured true
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+
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+ def compile_file_content(request)
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+ <<R
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+ #{request.extra}
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+ #{request.content}
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+ #{request.test}
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+ R
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+ end
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+
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+ def tempfile_extension
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+ '.R'
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+ end
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+
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+ def command_line(filename)
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+ %Q{R -q -e testthat::test_file('#{filename}',reporter='junit')} #TODO use
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+ end
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+
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+ def post_process_file(file, result, status)
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+ if status.failed?
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+ [result, :errored]
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+ else
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+ super
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+ end
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+ end
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+
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+ def to_structured_result(result)
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+ clean_xml = result.gsub(/^>.+$/, '')
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+ transform(Nokogiri::XML(clean_xml).xpath('//testcase'))
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+ end
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+
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+ def transform(examples)
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+ examples.map do |it|
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+ failure = it.at('failure', 'error')
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+ if failure
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+ [it['name'].gsub('_', ' '), :failed, failure.content]
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+ else
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+ [it['name'].gsub('_', ' '), :passed, '']
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+ end
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+ end
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+ end
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+
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+ def cleanup_raw_result(result)
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+ super(result.gsub 'tmpmumuki', '/tmp/mumuki')
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+ end
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+ end
data/lib/try_hook.rb ADDED
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+ class RTryHook < Mumukit::Templates::TryHook
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+ isolated true
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+ attr_reader :query_hook
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+
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+ def initialize(config = nil)
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+ super config
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+ @query_hook = RQueryHook.new
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+ end
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+
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+ def compile_file_content(r)
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+ <<R
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+ #{@query_hook.compile_file_header(r)}
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+ cat("#{query_separator}", fill = TRUE);
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+ #{@query_hook.compile_query(r.query)}
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+ cat("#{goal_separator}", fill = TRUE);
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+ #{@query_hook.compile_query(r.goal.with_indifferent_access[:query] || 'NULL')}
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+ R
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+ end
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+
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+ delegate :tempfile_extension, to: :query_hook
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+ delegate :command_line, to: :query_hook
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+
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+ def query_separator
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+ '!!!MUMUKI-QUERY-START!!!'
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+ end
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+
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+ def goal_separator
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+ '!!!MUMUKI-GOAL-START!!!'
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+ end
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+
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+ def to_structured_results(_file, result, status)
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+ /#{query_separator}
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+ ?(.*)
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+ #{goal_separator}
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+ ?(.*)
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+ /m =~ result
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+ {
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+ query: to_query_result($1, status),
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+ goal: $2,
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+ status: status
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+ }
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+ end
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+
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+ def to_query_result(result, status)
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+ { result: result, status: status }
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+ end
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+ end
data/lib/version.rb ADDED
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+ module RVersionHook
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+ VERSION = '0.1.0'
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+ end
metadata ADDED
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+ --- !ruby/object:Gem::Specification
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+ name: mumuki-r-runner
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+ version: !ruby/object:Gem::Version
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+ version: 0.1.0
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+ platform: ruby
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+ authors:
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+ - Franco Leonardo Bulgarelli
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+ date: 2020-02-06 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: mumukit
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '2.30'
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '2.30'
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+ - !ruby/object:Gem::Dependency
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+ name: bundler
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '2.0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '2.0'
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+ - !ruby/object:Gem::Dependency
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+ name: rake
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '10.0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '10.0'
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+ - !ruby/object:Gem::Dependency
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+ name: rspec
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '3.4'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '3.4'
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+ - !ruby/object:Gem::Dependency
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+ name: codeclimate-test-reporter
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: mumukit-bridge
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '3.5'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '3.5'
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+ description:
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+ email:
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+ - franco@mumuki.org
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+ executables: []
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+ extensions: []
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+ extra_rdoc_files: []
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+ files:
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+ - lib/metadata_hook.rb
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+ - lib/query_hook.rb
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+ - lib/r_runner.rb
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+ - lib/test_hook.rb
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+ - lib/try_hook.rb
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+ - lib/version.rb
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+ homepage: http://github.com/mumuki/mumuki-r-runner
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+ licenses:
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+ - MIT
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+ metadata: {}
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+ post_install_message:
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+ rdoc_options: []
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+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ requirements: []
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+ rubygems_version: 3.0.3
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+ signing_key:
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+ specification_version: 4
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+ summary: R Runner for Mumuki
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+ test_files: []