multimarkdown 4.5.0.r1

data/MultiMarkdown-4/latex.h

@@ -0,0 +1,16 @@
+#ifndef LATEX_PARSER_H
+#define LATEX_PARSER_H
+
+#include "parser.h"
+#include "writer.h"
+
+
+void print_latex_node_tree(GString *out, node *list, scratch_pad *scratch);
+void print_latex_node(GString *out, node *n, scratch_pad *scratch);
+void print_latex_localized_typography(GString *out, int character, scratch_pad *scratch);
+void print_latex_string(GString *out, char *str, scratch_pad *scratch);
+void print_latex_url(GString *out, char *str, scratch_pad *scratch);
+void print_latex_endnotes(GString *out, scratch_pad *scratch);
+int  find_latex_mode(int format, node *n);
+
+#endif

data/MultiMarkdown-4/libMultiMarkdown.h

@@ -0,0 +1,156 @@
+/*
+
+	libMultiMarkdown.h -- MultiMarkdown library header
+
+	(c) 2013 Fletcher T. Penney (http://fletcherpenney.net/).
+
+	This program is free software; you can redistribute it and/or modify
+	it under the terms of the GNU General Public License or the MIT
+	license.  See LICENSE for details.
+	
+	This program is distributed in the hope that it will be useful,
+	but WITHOUT ANY WARRANTY; without even the implied warranty of
+	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+	GNU General Public License for more details.
+
+*/
+
+//#include "parser.h"
+
+/* Main API commands */
+
+char * markdown_to_string(char * source, unsigned long extensions, int format);
+bool   has_metadata(char *source, unsigned long extensions);
+char * extract_metadata_keys(char *source, unsigned long extensions);
+char * extract_metadata_value(char *source, unsigned long extensions, char *key);
+char * mmd_version(void);
+
+
+/* These are the basic extensions */
+enum parser_extensions {
+	EXT_COMPATIBILITY   = 1 << 0,    /* Markdown compatibility mode */
+	EXT_COMPLETE        = 1 << 1,    /* Create complete document */
+	EXT_SNIPPET         = 1 << 2,    /* Create snippet only */
+	EXT_HEAD_CLOSED     = 1 << 3,    /* for use by parser */
+	EXT_SMART           = 1 << 4,    /* Enable Smart quotes */
+	EXT_NOTES           = 1 << 5,    /* Enable Footnotes */
+	EXT_NO_LABELS       = 1 << 6,    /* Don't add anchors to headers, etc. */
+	EXT_FILTER_STYLES   = 1 << 7,    /* Filter out style blocks */
+	EXT_FILTER_HTML     = 1 << 8,    /* Filter out raw HTML */
+	EXT_PROCESS_HTML    = 1 << 9,    /* Process Markdown inside HTML */
+	EXT_NO_METADATA     = 1 << 10,   /* Don't parse Metadata */
+	EXT_OBFUSCATE       = 1 << 11,   /* Mask email addresses */
+	EXT_CRITIC          = 1 << 12,   /* Critic Markup Support */
+	EXT_CRITIC_ACCEPT   = 1 << 13,   /* Accept all proposed changes */
+	EXT_CRITIC_REJECT   = 1 << 14,   /* Reject all proposed changes */
+	EXT_RANDOM_FOOT     = 1 << 15,   /* Use random numbers for footnote links */
+	EXT_HEADINGSECTION  = 1 << 16,   /* Group blocks under parent heading */
+	EXT_FAKE            = 1 << 31,   /* 31 is highest number allowed */
+};
+
+/* Define output formats we support -- first in list is default */
+enum export_formats {
+	HTML_FORMAT,
+	TEXT_FORMAT,
+	LATEX_FORMAT,
+	MEMOIR_FORMAT,
+	BEAMER_FORMAT,
+	OPML_FORMAT,
+	ODF_FORMAT,
+	RTF_FORMAT,
+	ORIGINAL_FORMAT,                 /* Not currently used */
+	CRITIC_ACCEPT_FORMAT,
+	CRITIC_REJECT_FORMAT,
+	CRITIC_HTML_HIGHLIGHT_FORMAT,
+	LYX_FORMAT,
+};
+
+/* These are the identifiers for node types */
+enum keys {
+	NO_TYPE,
+	LIST,
+	STR,
+	APOSTROPHE,
+	FOOTER,
+	PARA,
+	PLAIN,
+	LINEBREAK,
+	SPACE,
+	HEADINGSECTION,
+	H1, H2, H3, H4, H5, H6, H7,	/* Keep these in order */
+	METADATA,
+	METAKEY,
+	METAVALUE,
+	MATHSPAN,
+	STRONG,
+	EMPH,
+	LINK,
+	SOURCE,
+	TITLE,
+	REFNAME,
+	AUTOLABEL,
+	IMAGE,
+	IMAGEBLOCK,
+	NOTEREFERENCE,
+	CODE,
+	HTML,
+	ELLIPSIS,
+	ENDASH,
+	EMDASH,
+	SINGLEQUOTED,
+	DOUBLEQUOTED,
+	BLOCKQUOTE,
+	BLOCKQUOTEMARKER,
+	RAW,
+	VERBATIM,
+	VERBATIMTYPE,
+	DEFLIST,
+	TERM,
+	DEFINITION,
+	HRULE,
+	ORDEREDLIST,
+	BULLETLIST,
+	LISTITEM,
+	HTMLBLOCK,
+	TABLE,
+	TABLECAPTION,
+	TABLELABEL,
+	TABLESEPARATOR,
+	TABLECELL,
+	CELLSPAN,
+	TABLEROW,
+	TABLEBODY,
+	TABLEHEAD,
+	LINKREFERENCE,
+	NOTESOURCE,
+	CITATIONSOURCE,
+	SOURCEBRANCH,
+	NOTELABEL,
+	ATTRVALUE,
+	ATTRKEY,
+	GLOSSARYSOURCE,
+	GLOSSARYSORTKEY,
+	GLOSSARYTERM,
+	CITATION,
+	NOCITATION,
+	CRITICADDITION,
+	CRITICDELETION,
+	CRITICSUBSTITUTION,
+	CRITICHIGHLIGHT,
+	CRITICCOMMENT,
+	SUPERSCRIPT,
+	SUBSCRIPT,
+	VARIABLE,
+	KEY_COUNTER                      /* This *MUST* be the last item in the list */
+};
+
+/* This is the element used in the resulting parse tree */
+struct node {
+	short             key;           /* what type of element are we? */
+	char              *str;          /* relevant string from source for element */
+	struct link_data  *link_data;    /* store link info when relevant */
+	struct node       *children;     /* child elements */
+	struct node       *next;         /* next element */
+};
+
+typedef struct node node;

data/MultiMarkdown-4/lyx.c

@@ -0,0 +1,2163 @@
+/*
+
+	lyx.c -- LyX writer
+
+	(c) 2013 Charles R. Cowan
+	(c) 2013 Fletcher T. Penney (http://fletcherpenney.net/).
+
+	Derived from MultiMarkdown by Fletcher T. Penney - added code to support the LyX format directly
+	
+	Derived from peg-multimarkdown, which was forked from peg-markdown,
+	which is (c) 2008 John MacFarlane (jgm at berkeley dot edu), and 
+	licensed under GNU GPL or MIT.
+
+	This program is free software; you can redistribute it and/or modify
+	it under the terms of the GNU General Public License or the MIT
+	license.  See LICENSE for details.
+	
+	This program is distributed in the hope that it will be useful,
+	but WITHOUT ANY WARRANTY; without even the implied warranty of
+	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+	GNU General Public License for more details.
+
+*/
+
+#include "lyx.h"
+
+/* #define DEBUG_ON */
+
+/* #define DUMP_TREES */
+
+/* allow the user to change the heading levels */
+
+GString *heading_name[7];
+
+#if defined(DEBUG_ON) || defined(DUMP_TREES)
+  const char * const node_types[] = {
+  "NO_TYPE",
+  "LIST",
+  "STR",
+  "APOSTROPHE",
+  "FOOTER",
+  "PARA",
+  "PLAIN",
+  "LINEBREAK",
+  "SPACE",
+  "HEADINGSECTION",
+  "H1", 
+  "H2", 
+  "H3", 
+  "H4", 
+  "H5", 
+  "H6", 
+  "H7", 
+  "METADATA",
+  "METAKEY",
+  "METAVALUE",
+  "MATHSPAN",
+  "STRONG",
+  "EMPH",
+  "LINK",
+  "SOURCE",
+  "TITLE",
+  "REFNAME",
+  "AUTOLABEL",
+  "IMAGE",
+  "IMAGEBLOCK",
+  "NOTEREFERENCE",
+  "CODE",
+  "HTML",
+  "ELLIPSIS",
+  "ENDASH",
+  "EMDASH",
+  "SINGLEQUOTED",
+  "DOUBLEQUOTED",
+  "BLOCKQUOTE",
+  "BLOCKQUOTEMARKER",
+  "RAW",
+  "VERBATIM",
+  "VERBATIMTYPE",
+  "DEFLIST",
+  "TERM",
+  "DEFINITION",
+  "HRULE",
+  "ORDEREDLIST",
+  "BULLETLIST",
+  "LISTITEM",
+  "HTMLBLOCK",
+  "TABLE",
+  "TABLECAPTION",
+  "TABLELABEL",
+  "TABLESEPARATOR",
+  "TABLECELL",
+  "CELLSPAN",
+  "TABLEROW",
+  "TABLEBODY",
+  "TABLEHEAD",
+  "LINKREFERENCE",
+  "NOTESOURCE",
+  "CITATIONSOURCE",
+  "SOURCEBRANCH",
+  "NOTELABEL",
+  "ATTRVALUE",
+  "ATTRKEY",
+  "GLOSSARYSOURCE",
+  "GLOSSARYSORTKEY",
+  "GLOSSARYTERM",
+  "CITATION",
+  "NOCITATION",
+  "CRITICADDITION",
+  "CRITICDELETION",
+  "CRITICSUBSTITUTION",
+  "CRITICHIGHLIGHT",
+  "CRITICCOMMENT",
+  "SUPERSCRIPT",
+  "SUBSCRIPT",
+  "KEY_COUNTER"
+  }; 
+  
+  
+#endif
+
+
+#ifdef DUMP_TREES
+
+void dump_tree(node* n, scratch_pad *scratch)
+{
+	int i;
+	while(n != NULL){
+	   scratch->lyx_debug_nest++;
+       g_string_append(scratch->lyx_debug_pad,"  "); /* add a level */
+	   fprintf(stderr, "\n\n%sNode: %s",scratch->lyx_debug_pad->str,node_types[n->key]);
+	   fprintf(stderr, "\n%s  str: %s",scratch->lyx_debug_pad->str,n->str);
+	   if (n->link_data != NULL){
+	   	 fprintf(stderr, "\n%s  label: %s",scratch->lyx_debug_pad->str,n->link_data->label);
+	   	 fprintf(stderr, "\n%s  source: %s",scratch->lyx_debug_pad->str,n->link_data->source);
+	   	 fprintf(stderr, "\n%s  title: %s",scratch->lyx_debug_pad->str,n->link_data->title);
+	   }
+	   	  dump_tree(n->children,scratch);
+	   scratch->lyx_debug_nest--;
+	   g_string_free(scratch->lyx_debug_pad,TRUE); /* don' see a way to shorten the string */
+	   scratch->lyx_debug_pad = g_string_new(""); /* so create a new, shorter one */
+	   for(i=0;i<scratch->lyx_debug_nest;i++){
+	    g_string_append(scratch->lyx_debug_pad,"  ");
+       }
+			
+		n = n->next;
+    }
+}
+#endif 
+
+
+void perform_lyx_output(GString *out, node* list, scratch_pad *scratch)
+{
+	node *headings;
+	node *base_header_level;
+	char *key;
+	
+#ifdef DUMP_TREES
+      fprintf(stderr, "\n*** Base Tree ***\n");
+      dump_tree(list,scratch);
+      fprintf (stderr, "\n*** End Base Tree ***\n");
+      
+      fprintf(stderr, "\n*** LINK Tree ***\n");
+      dump_tree(scratch->links,scratch);
+      fprintf(stderr, "\n*** END LINK Tree ***\n");
+
+#endif
+			
+	/* initialize the heading names */
+	heading_name[0] = g_string_new("Part");
+	heading_name[1] = g_string_new("Chapter");
+	heading_name[2] = g_string_new("Section");
+	heading_name[3] = g_string_new("Subsection");
+	heading_name[4] = g_string_new("Subsubsection");
+	heading_name[5] = g_string_new("Paragraph");
+	heading_name[6] = g_string_new("Subparagraph");
+	
+		/* get user supplied heading section names and base header level these both
+		   affect creating the prefixes */
+	
+	GString *lyx_headings = g_string_new("");
+	int hcount;
+	hcount = 0;
+	const char s[2] = ",";
+    char *token;
+    char *cleaned;
+	if (tree_contains_key(list, METAKEY)) {
+		headings = metadata_for_key("lyxheadings",list);
+		if (headings != NULL) {
+			key = metavalue_for_key("lyxheadings",list);
+			g_string_append(lyx_headings,key);
+			token = strtok(lyx_headings->str, s);
+			 while( token != NULL )  {
+			   g_string_free(heading_name[hcount],TRUE);
+			   cleaned = clean_string(token);
+			   heading_name[hcount] = g_string_new(cleaned);
+			   free(cleaned);
+               token = strtok(NULL, s);
+               hcount++;
+			   if (hcount>6){ /* only 7 allowed */
+			     break;
+				 }
+             }
+			free(key);
+			free(token);
+		} 
+	}
+	g_string_free(lyx_headings,TRUE);
+	
+	/* get base heading level */
+        scratch->baseheaderlevel = 1;
+        if (tree_contains_key(list, METAKEY)) {
+		base_header_level = metadata_for_key("baseheaderlevel",list);
+		if (base_header_level != NULL) {
+			key = metavalue_for_key("baseheaderlevel",list);
+			scratch->baseheaderlevel = atoi(key);
+			free(key);
+		};
+	};
+	
+	
+	/* add prefixes for LyX references */
+	add_prefixes(list, list, scratch);
+	
+	bool isbeamer;
+	isbeamer = begin_lyx_output(out,list,scratch);    /* get Metadata controls */
+	if (isbeamer){
+		g_string_free(heading_name[1],TRUE);
+		heading_name[1] = g_string_new("Section");
+		g_string_free(heading_name[2],TRUE);
+		heading_name[2] = g_string_new("Frame");
+		print_lyxbeamer_node_tree(out,list,scratch,FALSE);
+	} else {
+	print_lyx_node_tree(out,list,scratch,FALSE);  
+	}
+	end_lyx_output(out,list,scratch);                 /* Close the document */
+	
+	/* clean up the heading names */
+	int i;
+	for (i=0;i<=6;i++){
+		g_string_free(heading_name[i],TRUE);   
+	}
+	
+}
+
+/* begin_lyx_output -- Check metadata and open the document */
+bool begin_lyx_output(GString *out, node* list, scratch_pad *scratch) {
+#ifdef DEBUG_ON
+	fprintf(stderr, "begin_lyx_output\n");
+#endif
+	node *content;
+	node *latex_mode;
+	node *number_headings;
+	node *clean_pdf;
+	node *quote_language;
+	node *modules;
+	node *packages;
+	char short_prefix[6];
+	int i,j;
+	const char s[2] = ",";
+	char *key;
+	char *label;
+	char *value;
+	char *temp;
+	char *token;
+	char *tmp;
+	char *cleaned;
+	bool isbeamer;  /* beamer has different processing */
+	
+	isbeamer = FALSE; /* only for beamer */
+	
+
+	/* check for numbered versus unnumbered headings */
+	    scratch->lyx_number_headers = TRUE; /* default - numbering */
+		if (tree_contains_key(list, METAKEY)) {
+		number_headings = metadata_for_key("numberheadings",list);
+		if (number_headings != NULL) {
+			key = metavalue_for_key("numberheadings",list);
+			label = label_from_string(key);
+			if (strcmp(label, "yes") == 0) {
+				scratch->lyx_number_headers = TRUE;
+			} else if (strcmp(label, "no") == 0) {
+				scratch->lyx_number_headers = FALSE;
+			}
+			free(label);
+			free(key);
+		}
+	}
+	
+	/* Get the language for quotes */
+		if (tree_contains_key(list, METAKEY)) {
+		quote_language = metadata_for_key("quoteslanguage",list);
+		if (quote_language != NULL) {
+			key = metavalue_for_key("quoteslanguage",list);
+			temp = label_from_node_tree(quote_language->children);
+			if ((strcmp(temp, "nl") == 0) || (strcmp(temp, "dutch") == 0)) { scratch->language = DUTCH; }   else 
+			if ((strcmp(temp, "de") == 0) || (strcmp(temp, "german") == 0)) { scratch->language = GERMAN; } else 
+			if (strcmp(temp, "germanguillemets") == 0) { scratch->language = GERMANGUILL; } else 
+			if ((strcmp(temp, "fr") == 0) || (strcmp(temp, "french") == 0)) { scratch->language = FRENCH; } else 
+			if ((strcmp(temp, "sv") == 0) || (strcmp(temp, "swedish") == 0)) { scratch->language = SWEDISH; }
+			free(temp);
+			free(key);
+			}
+	    }
+			
+	g_string_append(out, "#LyX File created by multimarkdown\n");
+	g_string_append(out,"\\lyxformat 413\n");
+	g_string_append(out, "\\begin_document\n");
+	g_string_append(out, "\\begin_header\n");
+	
+	GString *lyx_class = g_string_new("");
+	if (tree_contains_key(list, METAKEY)) {
+		latex_mode = metadata_for_key("latexmode",list);
+		if (latex_mode != NULL) {
+			key = metavalue_for_key("latexmode",list);
+			label = label_from_string(key);
+			g_string_append(lyx_class,label);
+			if (strcmp(label,"beamer")==0){
+				isbeamer = TRUE;
+			}
+			free(label);
+			free(key);
+		} else {
+			g_string_append(lyx_class,"memoir");
+		}
+		
+	}else{
+	     g_string_append(lyx_class,"memoir");	
+	}
+	g_string_append(out,"\\textclass ");
+	g_string_append_printf(out,"%s",lyx_class->str);
+	g_string_append(out,"\n");
+	
+	g_string_append(out,"\\begin_preamble\n");
+	g_string_append(out,"\\usepackage{listings}\n");
+	g_string_append(out,"\\usepackage{natbib}\n");
+	g_string_append(out,"\\usepackage{nomencl}\n");
+	g_string_append(out,"\\usepackage{booktabs}\n");
+	g_string_append(out,"\\usepackage{refstyle}\n");
+	g_string_append(out,"\\usepackage{varioref}\n");
+	
+	
+	if (tree_contains_key(list, METAKEY)) {
+		packages = metadata_for_key("packages",list);
+		if (packages != NULL) {
+			key = metavalue_for_key("packages",list);
+			tmp = strdup(key);
+			token = strtok(tmp, s);
+			 while( token != NULL )  {
+               g_string_append_printf(out,"\\usepackage{%s}\n",clean_string(token));
+               token = strtok(NULL, s);
+             }
+			free(key);
+			free(tmp);
+		} 
+	}
+	
+	if(isbeamer){
+	  if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("theme", list);
+		if (content != NULL) {
+			value = metavalue_for_key("theme",list);
+			g_string_append_printf(out,"\\usetheme{%s}\n",value);
+			free(value);
+		} else{
+			g_string_append(out,"\\usetheme{warsaw}\n");
+		}
+	  } else {
+		g_string_append(out,"\\usetheme{warsaw}\n");
+	  }	
+	  g_string_append(out,"\\setbeamercovered{transparent}\n");
+	}
+	
+	if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("latex input", list);
+		if (content != NULL) {
+			value = metavalue_for_key("latex input",list);
+			if (strcmp(value,"mmd-natbib-plain")==0){
+				g_string_append(out,"\\bibpunct{[}{]}{;}{n}{}{,}\n");
+			}else{
+				g_string_append(out,"\\bibpunct{(}{)}{,}{a}{,}{,}\n");
+			}
+			free(value);
+		} else{
+			g_string_append(out,"\\bibpunct{(}{)}{,}{a}{,}{,}\n");
+		}
+	} else {
+		g_string_append(out,"\\bibpunct{(}{)}{,}{a}{,}{,}\n");
+	}
+
+    /* set up nice referencing */
+    
+    if (scratch->lyx_number_headers){
+	    for(i=0;i<7;i++){
+		  strncpy(short_prefix,heading_name[i]->str,5);
+		  short_prefix[5]= '\0'; /* no terminator if strncpy ends because of length */
+		  for(j = 0; short_prefix[j]; j++){
+	    		short_prefix[j] = tolower(short_prefix[j]);
+	      }
+	      g_string_append_printf(out,"\\newref{%s}{refcmd={%s \\ref{#1} \\vpageref{#1}}}\n",short_prefix,heading_name[i]->str);
+	    }
+	    g_string_append(out,"\\newref{tab}{refcmd={Table \\ref{#1} \\vpageref{#1}}}\n");
+	    g_string_append(out,"\\newref{fig}{refcmd={Figure \\ref{#1} \\vpageref{#1}}}\n");
+    } else {
+    	for(i=0;i<7;i++){
+		  strncpy(short_prefix,heading_name[i]->str,5);
+		  short_prefix[5]= '\0'; /* no terminator if strncpy ends because of length */
+		  for(j = 0; short_prefix[j]; j++){
+	    		short_prefix[j] = tolower(short_prefix[j]);
+	      }
+	      g_string_append_printf(out,"\\newref{%s}{refcmd={``\\nameref{#1}'' \\vpageref{#1}}}\n",short_prefix);
+	    }
+        g_string_append(out,"\\newref{tab}{refcmd={Table \\ref{#1} \\vpageref{#1}}}\n");
+	    g_string_append(out,"\\newref{fig}{refcmd={Figure \\ref{#1} \\vpageref{#1}}}\n");
+            	
+    }
+
+	g_string_append(out,"\\end_preamble\n");
+	
+	GString *class_options = g_string_new("\\options refpage");
+	
+	if (tree_contains_key(list, METAKEY)) {
+		clean_pdf = metadata_for_key("cleanpdf",list);
+		if (clean_pdf != NULL) {
+			key = metavalue_for_key("cleanpdf",list);
+			label = label_from_string(key);
+			if (strcmp(label, "yes") == 0) {
+				g_string_append(class_options,",hidelinks");
+			} 
+			free(label);
+			free(key);
+		}
+	}
+	
+    if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("class options", list);
+		if (content != NULL) {
+			value = metavalue_for_key("class options",list);
+			g_string_append(class_options,",");
+			g_string_append(class_options,value);
+			free(value);
+		}
+	}
+	g_string_append(class_options,"\n");
+	g_string_append(out,class_options->str);
+	g_string_free(class_options,TRUE);
+	
+			
+		
+	g_string_append(out,"\\begin_modules\n");
+	if (tree_contains_key(list, METAKEY)) {
+		modules = metadata_for_key("modules",list);
+		if (modules != NULL) {
+			key = metavalue_for_key("modules",list);
+			tmp = strdup(key);
+			token = strtok(tmp, s);
+			 while( token != NULL )  {
+			   cleaned = clean_string(token);
+               g_string_append_printf(out,"%s\n",cleaned);
+               free(cleaned);
+               token = strtok(NULL, s);
+             }
+			free(key);
+			free(tmp);
+			free(token);
+		} 
+	}
+	if(isbeamer){
+	  g_string_append(out,"beamer-fragile\n");
+	}
+	 g_string_append(out,"\\end_modules\n");
+	
+	g_string_append(out,"\\bibtex_command default\n");
+	g_string_append(out,"\\cite_engine natbib_authoryear\n");
+	
+	g_string_free(lyx_class,TRUE);
+	
+	g_string_append(out,"\\end_header\n");
+	g_string_append(out,"\\begin_body\n");
+	
+	if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("title", list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Title\n");
+			value = metavalue_for_key("title",list);
+            print_lyx_string(out,value,scratch,LYX_NONE);
+			free(value);
+			g_string_append(out, "\n\\end_layout\n");
+		}
+	}
+	
+	if ((isbeamer) && (tree_contains_key(list, METAKEY))) {
+		content = metadata_for_key("subtitle", list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Subtitle\n");
+			value = metavalue_for_key("subtitle",list);
+			print_lyx_string(out,value,scratch,LYX_NONE);
+			free(value);
+			g_string_append(out, "\n\\end_layout\n");
+		}
+	}
+	
+	if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("author", list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Author\n");
+			value = metavalue_for_key("author",list);
+			print_lyx_string(out,value,scratch,LYX_NONE);
+			free(value);
+			g_string_append(out, "\n\\end_layout\n");
+		}
+	}
+	
+	if ((isbeamer) && (tree_contains_key(list, METAKEY))){
+		content = metadata_for_key("affiliation", list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Institute\n");
+			value = metavalue_for_key("affiliation",list);
+			print_lyx_string(out,value,scratch,LYX_NONE);
+			free(value);
+			g_string_append(out, "\n\\end_layout\n");
+		}
+	}
+	
+	if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("date", list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Date\n");
+			value = metavalue_for_key("date",list);
+			print_lyx_string(out,value,scratch,LYX_NONE);
+			free(value);
+			g_string_append(out, "\n\\end_layout\n");
+		}
+	}
+	
+	if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("abstract", list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Abstract\n");
+			value = metavalue_for_key("abstract",list);
+            print_lyx_string(out,value,scratch,LYX_NONE);
+			free(value);
+			g_string_append(out, "\n\\end_layout\n");
+		}
+	}
+    return isbeamer;	
+}
+
+/* end_lyx_output -- close the document */
+void end_lyx_output(GString *out, node* list, scratch_pad *scratch) {
+	node *content;
+	char *value;
+#ifdef DEBUG_ON
+	fprintf(stderr, "end_lyx_output\n");
+#endif
+	
+
+     	/* Handle BibTeX */
+	
+if (tree_contains_key(list, METAKEY)) {
+		content = metadata_for_key("bibtex",list);
+		if (content != NULL) {
+			g_string_append(out, "\n\\begin_layout Standart\n");
+			g_string_append(out,"\n\\begin_inset CommandInset bibtex");
+			g_string_append(out,"\nLatexCommand bibtex");
+			value = metavalue_for_key("bibtex",list);
+			g_string_append_printf(out,"\nbibfiles \"%s\"",value);
+			free(value);
+			g_string_append(out,"\noptions \"plainnat\"");
+			g_string_append(out,"\n\n\\end_inset");
+			g_string_append(out, "\n\n\\end_layout\n");
+		}
+	}	
+
+	g_string_append(out, "\n\\end_body\n");
+	g_string_append(out, "\\end_document\n");
+}
+
+bool is_lyx_complete_doc(node *meta);
+
+
+/* print_lyx_node_tree -- convert node tree to Lyx */
+void print_lyx_node_tree(GString *out, node *list, scratch_pad *scratch, bool no_newline) {
+#ifdef DEBUG_ON
+    int i;
+    scratch->lyx_debug_nest++;
+    g_string_append(scratch->lyx_debug_pad,"  "); /* add a level */
+	fprintf(stderr, "\n%sStart_print_Node_Tree: %s\n",scratch->lyx_debug_pad->str,node_types[scratch->lyx_para_type]);
+	scratch->lyx_debug_nest++;
+    g_string_append(scratch->lyx_debug_pad,"  "); /* add a level */
+#endif
+	while (list != NULL) {
+		print_lyx_node(out, list, scratch, no_newline);
+		list = list->next;
+	}
+#ifdef DEBUG_ON
+    scratch->lyx_debug_nest--;
+	g_string_free(scratch->lyx_debug_pad,TRUE); /* don' see a way to shorten the string */
+	scratch->lyx_debug_pad = g_string_new(""); /* so create a new, shorter one */
+	for(i=0;i<scratch->lyx_debug_nest;i++)
+	  g_string_append(scratch->lyx_debug_pad,"  ");
+	fprintf(stderr, "\n%sEnd_print_Node_Tree: %s\n",scratch->lyx_debug_pad->str,node_types[scratch->lyx_para_type]);
+	scratch->lyx_debug_nest--;
+	g_string_free(scratch->lyx_debug_pad,TRUE); /* don' see a way to shorten the string */
+	scratch->lyx_debug_pad = g_string_new(""); /* so create a new, shorter one */
+	for(i=0;i<scratch->lyx_debug_nest;i++)
+	  g_string_append(scratch->lyx_debug_pad,"  ");
+#endif	
+}
+
+/* print_lyx_node -- convert given node to Lyx and append */
+void print_lyx_node(GString *out, node *n, scratch_pad *scratch, bool no_newline) {
+	node *temp_node;
+	node *tcaption;
+	char *temp;
+	char *prefixed_label;
+	int lev;
+	char *width = NULL;
+	char *height = NULL;
+	GString *temp_str;
+	GString *raw_str;
+	char char_temp;
+	int i;
+	int old_type;
+	int rows;
+	int cols;
+	int multicol;
+	int colwidth;
+
+	if (n == NULL)
+		return;
+	
+	/* debugging statement */
+#ifdef DEBUG_ON
+	fprintf(stderr, "\n%sprint_lyx_node: %s\n",scratch->lyx_debug_pad->str,node_types[n->key]);
+	fprintf(stderr,"%scontent: %s\n",scratch->lyx_debug_pad->str,n->str);
+#endif
+	
+	switch (n->key) {
+		case NO_TYPE:
+			break;
+		case LIST:
+			print_lyx_node_tree(out,n->children,scratch, no_newline);
+			break;
+		case STR:
+			print_lyx_string(out,n->str, scratch,LYX_NONE);
+			break;
+		case SPACE:
+			if (strncmp(n->str,"\n",1)==0){
+			  if (no_newline){
+			  	g_string_append(out," "); /* just a space */
+			  } else{
+			    g_string_append_printf(out,"%s ",n->str); /* lyx needs the space */
+		      }
+			}else{
+			  g_string_append_printf(out,"%s",n->str);
+			}
+			break;
+		case PLAIN: /* act as if all items are wrapped in a paragraph */
+		case PARA:
+			#ifdef DEBUG_ON
+	        fprintf(stderr, "\n%sprint_lyx_paragraph: %s\n",scratch->lyx_debug_pad->str,node_types[scratch->lyx_para_type]);
+	        fprintf(stderr,"%scontent: %s\n",scratch->lyx_debug_pad->str,n->str);
+            #endif
+			/* definition list special case, must append first definition to the term */
+			if (scratch -> lyx_para_type == DEFINITION){
+				  if (!scratch->lyx_definition_open){ /* first definition after a term */
+				    g_string_append(out,"\n ");
+				    print_lyx_node_tree(out,n->children,scratch, FALSE); /* stick on the end of the term */
+			        g_string_append(out,"\n\\end_layout\n");
+				    scratch->lyx_definition_open = TRUE; /* first definition after a term hit */
+				    } else{
+				    g_string_append(out,"\n\n\\begin_deeper\n");  // second (or nth definition)
+				    g_string_append(out, "\n\\begin_layout Standard\n"); /* treat it as a paragraph */
+				    print_lyx_node_tree(out,n->children,scratch, FALSE);
+			        g_string_append(out, "\n\\end_layout\n");
+			        g_string_append(out,"\n\\end_deeper\n");
+				    }
+				break;
+			}
+			switch (scratch->lyx_para_type) {
+				case BLOCKQUOTE:
+					g_string_append(out, "\n\\begin_layout Quote\n");
+					break;
+				case ORDEREDLIST:
+					g_string_append(out, "\n\\begin_layout Enumerate\n");
+					break;
+				case BULLETLIST:
+					g_string_append(out, "\n\\begin_layout Itemize\n");
+					if (scratch-> lyx_beamerbullet){
+					  g_string_append(out,"\n\\begin_inset ERT");
+					  g_string_append(out,"\nstatus collapsed\n");
+					  g_string_append(out,"\n\\begin_layout Plain Layout");
+					  g_string_append(out,"\n<+->");
+					  g_string_append(out,"\n\\end_layout\n");
+					  g_string_append(out,"\n\\end_inset\n");
+					}
+					break;
+				case NOTEREFERENCE:
+				case CITATION:
+				case NOCITATION:
+					g_string_append(out, "\n\\begin_inset Foot");
+					g_string_append(out, "\nstatus collapsed\n");
+					g_string_append(out, "\n\\begin_layout Plain Layout");
+					break;
+				case NOTESOURCE:
+			    case CITATIONSOURCE:
+			    	break; /* no enclosure by an environment */
+			    case GLOSSARYSOURCE:
+			    	g_string_append(out,"\ndescription \"");
+			    	break;
+				default:
+					g_string_append(out, "\n\\begin_layout Standard\n");
+					break;
+			}
+			print_lyx_node_tree(out,n->children,scratch, FALSE);
+			if (scratch->lyx_para_type == GLOSSARYSOURCE){
+				   g_string_append(out,"\"\n");
+			} else if ((scratch->lyx_para_type != NOTESOURCE) &&
+			        (scratch->lyx_para_type != CITATIONSOURCE)){
+			       g_string_append(out, "\n\\end_layout\n");
+	        }
+			if ((scratch->lyx_para_type == CITATION) ||
+			    (scratch->lyx_para_type == NOCITATION)) {
+			  g_string_append(out,"\n\\end_layout\n");
+			  g_string_append(out,"\n\\end_inset");
+			}
+			break;
+		case HRULE:
+			g_string_append(out,"\n\\begin_layout Standard\n");
+			g_string_append(out,"\n\\begin_inset CommandInset line\n");
+			g_string_append(out,"LatexCommand rule\n");
+			g_string_append(out,"offset \"0.5ex\"\n");
+			g_string_append(out,"width \"100col%\"\n");
+			g_string_append(out,"height \"1pt\"\n");
+			g_string_append(out,"\n\\end_inset\n");
+			g_string_append(out,"\n\\end_layout\n");
+			break;
+		case HTMLBLOCK:
+			/* don't print HTML block */
+			/* but do print HTML comments for raw LaTeX */
+			if (strncmp(n->str,"<!--",4) == 0) {
+				/* trim "-->" from end */
+				n->str[strlen(n->str)-3] = '\0';
+				g_string_append(out, "\n\\begin_layout Plain\n\\begin_inset ERT\nstatus collapsed\n\n\\begin_layout Plain Layout\n\n");
+                print_latex_string(out,&n->str[4],scratch);				
+				g_string_append(out,"\n\n\\end_layout\n\\end_inset\n\\end_layout\n");
+			}
+			break;
+		case VERBATIM:
+			old_type = scratch->lyx_para_type;
+			scratch->lyx_para_type = VERBATIM;
+			scratch->lyx_level++;
+			if (scratch->lyx_level > 1){
+				g_string_append(out,"\n\\begin_deeper\n");
+			}
+			g_string_append(out,"\\begin_layout Standard\n");
+			g_string_append(out,"\\begin_inset listings\n");
+			if ((n->children != NULL) && (n->children->key == VERBATIMTYPE)) {
+				trim_trailing_whitespace(n->children->str);
+				if (strlen(n->children->str) > 0) {
+					// NOTE: the language must match the LyX (LaTex) languages (e.g: Perl, not perl)
+					g_string_append_printf(out, "lstparams \"basicstyle={\\footnotesize\\ttfamily},language=%s\"\n", n->children->str,n->str);
+				}
+			   else {
+			   	 	g_string_append(out,"lstparams \"basicstyle={\\footnotesize\\ttfamily}\"\n");
+			   }
+			} else {
+		 	    g_string_append(out,"lstparams \"basicstyle={\\footnotesize\\ttfamily}\"\n");
+		       }
+			g_string_append(out,"inline false\n");
+			g_string_append(out,"status collapsed\n");
+			print_lyx_string(out, n->str, scratch,LYX_PLAIN); /* it is not children - just \n separated lines */
+			g_string_append(out,"\n\\end_inset\n");
+			g_string_append(out,"\\end_layout\n");
+			 scratch->lyx_level--;
+		    if (scratch->lyx_level > 0){   
+		        g_string_append(out,"\n\\end_deeper\n");
+		    }
+			scratch->lyx_para_type = old_type;
+			break;
+		case BULLETLIST:
+		case ORDEREDLIST:
+		case DEFLIST:
+			if (n->key == DEFLIST){
+				scratch->lyx_definition_hit = TRUE; 
+	            scratch->lyx_definition_open = FALSE;
+			}
+			old_type = scratch->lyx_para_type;
+			scratch->lyx_para_type = n->key;
+			scratch->lyx_level++;
+			if (scratch->lyx_level > 1){
+				g_string_append(out,"\n\\begin_deeper\n");
+			}
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+		    scratch->lyx_level--;
+		    if (scratch->lyx_level > 0){   
+		        g_string_append(out,"\n\\end_deeper\n");
+		    }
+			scratch->lyx_para_type = old_type;
+		    scratch->lyx_definition_open = FALSE;
+			break;
+		case LISTITEM:
+			#ifdef DEBUG_ON
+	          fprintf(stderr, "\nStart List Item\n");
+            #endif
+            i = 0;
+            old_type = scratch->lyx_para_type;
+			temp_node = n-> children; /* should be a list node */
+			if(temp_node->children == NULL) {
+				g_string_append(out,"\n\\begin_layout Itemize\n\\end_layout\n"); /* empty list item */
+			}
+			else { 
+				i = 0;
+				temp_node = temp_node-> children; /* process the list */
+				/* the first paragraph is the list item's first paragraph */
+				print_lyx_node(out,temp_node,scratch,no_newline);
+				/* now process any other content, including additional lists */
+					temp_node = temp_node-> next;
+					while ((temp_node != NULL) && (temp_node->key != BULLETLIST)
+					       && (temp_node->key != ORDEREDLIST) && (temp_node->key != DEFLIST)){
+					  i++;
+					  if (i == 1){
+					    g_string_append(out,"\n\\begin_deeper\n");
+					    old_type = scratch->lyx_para_type;
+					    scratch->lyx_para_type = PARA; /* and make it a paragraph, not a list item */
+					  }
+					  print_lyx_node(out, temp_node, scratch, no_newline);
+	       		      temp_node = temp_node->next;
+	       		    }
+			    if (i>0){
+			      i--;
+			      scratch->lyx_para_type = old_type; /* reset the paragraph type */
+			      g_string_append(out,"\n\\end_deeper\n");
+		   	    } 
+		        if (temp_node != NULL){ /* have hid an imbedded list */
+			      print_lyx_node(out,temp_node,scratch,no_newline);
+			    }
+    	    }  
+			#ifdef DEBUG_ON
+	          fprintf(stderr, "\nEnd List Item\n");
+            #endif
+			break;
+		case METADATA:
+			/* metadata we care about already handled */
+			break;
+		case METAKEY:
+		   	/* metadata we care about already handled */
+			break;
+		case METAVALUE:
+          /* metadata we care about already handled */
+			break;
+		case FOOTER:
+			print_lyx_endnotes(out, scratch);
+			break;
+		case HEADINGSECTION:
+			print_lyx_node_tree(out,n->children,scratch , FALSE);
+			break;
+		case H1: case H2: case H3: case H4: case H5: case H6:
+			lev = n->key - H1 + scratch->baseheaderlevel;  /* assumes H1 ... H6 are in order */
+			if (lev > 7)
+				lev = 7;	/* Max at level 7 */
+			GString *environment = g_string_new("\n\\begin_layout ");			
+			g_string_append(environment,heading_name[lev-1]->str); /* get the (possibly user modified) section name */
+			
+				if (!scratch->lyx_number_headers){
+				g_string_append(environment,"*\n");} /* mark as unnumbered */
+				else{	
+				g_string_append(environment,"\n");
+		     	};
+			/* Begin the environment */
+			    g_string_append_printf(out,"%s",environment->str);
+			g_string_free(environment,true);
+			/* Don't allow footnotes */
+			scratch->no_lyx_footnote = TRUE;
+			if (n->children->key == AUTOLABEL) {
+				/* use label for header since one was specified (MMD)*/
+				temp = label_from_string(n->children->str);
+				prefixed_label = prefix_label(heading_name[lev-1]->str,temp,FALSE);
+				print_lyx_node_tree(out, n->children->next, scratch , FALSE);
+				g_string_append(out,"\n\\begin_inset CommandInset label\n");
+				g_string_append(out,"LatexCommand label\n");
+				g_string_append_printf(out, "name \"%s\"",prefixed_label);
+				g_string_append(out,"\n\\end_inset\n");
+				free(prefixed_label);
+				free(temp);
+			} else {
+				/* generate a label by default for MMD */
+				temp = label_from_node_tree(n->children);
+				prefixed_label = prefix_label(heading_name[lev-1]->str,temp,FALSE);
+				print_lyx_node_tree(out, n->children, scratch, FALSE);
+				g_string_append(out,"\n\\begin_inset CommandInset label\n");
+				g_string_append(out,"LatexCommand label\n");
+				g_string_append_printf(out, "name \"%s\"",prefixed_label);
+				g_string_append(out,"\n\\end_inset\n");
+				free(prefixed_label);
+				free(temp);
+			}
+			scratch->no_lyx_footnote = FALSE;
+			g_string_append(out,"\n\\end_layout\n");
+			break;
+		case APOSTROPHE:
+			print_lyx_localized_typography(out, APOS, scratch);
+			break;
+		case ELLIPSIS:
+			print_lyx_localized_typography(out, ELLIP, scratch);
+			break;
+		case EMDASH:
+			print_lyx_localized_typography(out, MDASH, scratch);
+			break;
+		case ENDASH:
+			print_lyx_localized_typography(out, NDASH, scratch);
+			break;
+		case SINGLEQUOTED:
+			print_lyx_localized_typography(out, LSQUOTE, scratch);
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+			print_lyx_localized_typography(out, RSQUOTE, scratch);
+			break;
+		case DOUBLEQUOTED:
+			print_lyx_localized_typography(out, LDQUOTE, scratch);
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+			print_lyx_localized_typography(out, RDQUOTE, scratch);
+			break;
+		case LINEBREAK:
+			g_string_append(out, "\n\\begin_inset Newline newline\n\\end_inset\n");
+			break;
+		case MATHSPAN:
+			if (n->str[0] == '$') {
+				if (n->str[1] == '$') {
+					if (strncmp(&n->str[2],"\\begin",5) == 0) {
+						n->str[strlen(n->str)-2] = '\0';
+						g_string_append_printf(out, "\n\\begin_inset Formula %s\n\\end_inset\n",&n->str[1]);
+					} else {
+						g_string_append_printf(out, "\n\\begin_inset Formula %s\n\\end_inset\n",n->str);
+					}
+				} else {
+					if (strncmp(&n->str[1],"\\begin",5) == 0) {
+						n->str[strlen(n->str)-1] = '\0';
+						g_string_append_printf(out, "\n\\begin_inset Formula %s\n\\end_inset\n",&n->str[1]);
+					} else {
+						g_string_append_printf(out, "\n\\begin_inset Formula %s\n\\end_inset\n",n->str);
+					}
+				}
+			} else if (strncmp(&n->str[2],"\\begin",5) == 0) {
+				/* trim */
+				n->str[strlen(n->str)-3] = '\0';
+				g_string_append_printf(out, "\n\\begin_inset Formula %s\n\\end_inset\n", &n->str[2]);
+			} else {
+				if (n->str[strlen(n->str)-1] == ']') {
+					n->str[strlen(n->str)-3] = '\0';
+					g_string_append(out,"\\begin_inset Formula \n\\[");
+					g_string_append_printf(out, "\n%s\n\\]\n\\end_inset\n", &n->str[2]);
+				} else {
+					n->str[strlen(n->str)-3] = '\0';
+					g_string_append_printf(out, "\n\\begin_inset Formula $%s$\n\\end_inset\n", &n->str[2]);
+				}
+			}
+			break;
+		case STRONG:
+			g_string_append(out, "\n\\series bold\n");
+			print_lyx_node_tree(out,n->children,scratch, FALSE);
+			g_string_append(out, "\n\\series default\n");
+			break;
+		case EMPH:
+			g_string_append(out, "\n\\emph on\n");
+			print_lyx_node_tree(out,n->children,scratch, FALSE);
+			g_string_append(out, "\n\\emph default\n");
+			break;
+		case LINKREFERENCE:
+			break;
+		case LINK:
+#ifdef DEBUG_ON
+	fprintf(stderr, "print LyX link: '%s'\n",n->str);
+#endif
+           
+			/* Do we have proper info? */
+
+			if (n->link_data == NULL) {
+				/* NULL link_data could occur if we parsed this link before and it didn't
+					match anything */
+				n->link_data =  mk_link_data(NULL, NULL, NULL, NULL);
+			}
+
+			if ((n->link_data->label == NULL) &&
+			(n->link_data->source == NULL)) {
+#ifdef DEBUG_ON
+	fprintf(stderr, "print LyX link: '%s'\n",n->str);
+#endif
+				/* we seem to be a [foo][] style link */
+				/* so load a label */
+				temp_str = g_string_new("");
+				print_raw_node_tree(temp_str, n->children);
+				/* replace new-lines with spaces */
+				temp = temp_str->str;
+				while (*temp != '\0'){
+					if (*temp == '\n'){
+						*temp = ' ';
+					}
+					temp++;
+				}
+				free(n->link_data->label);
+				n->link_data->label = temp_str->str;
+				g_string_free(temp_str, FALSE);
+			}
+#ifdef DEBUG_ON
+	fprintf(stderr, "look for reference data for LyX link: '%s'\n",n->str);
+#endif
+			/* Load reference data */
+			if (n->link_data->label != NULL) {
+#ifdef DEBUG_ON
+	fprintf(stderr, "have label for LyX link: '%s'\n",n->str);
+#endif
+				temp = strdup(n->link_data->label);
+				free_link_data(n->link_data);
+				n->link_data = extract_link_data(temp, scratch);
+				   
+				if (n->link_data == NULL) {
+					/* replace original text since no definition found */
+					g_string_append(out, "[");
+					print_lyx_node(out, n->children, scratch, FALSE);
+					g_string_append(out,"]");
+					if (n->children->next != NULL) {
+						g_string_append(out, "[");
+						print_lyx_node_tree(out, n->children->next, scratch, FALSE);
+						g_string_append(out,"]");
+					} else if (n->str != NULL) {
+						/* no title label, so see if we stashed str*/
+						g_string_append_printf(out, "%s", n->str);
+					} else {
+						g_string_append_printf(out, "[%s]",temp);
+					}
+					free(temp);
+					break;
+				}
+				free(temp);
+			}
+			temp_str = g_string_new("");
+			print_lyx_node_tree(temp_str, n->children, scratch, TRUE);
+			raw_str = g_string_new("");
+			print_raw_node_tree(raw_str, n->children);
+			/* replace new-lines with spaces */
+				temp = raw_str->str;
+				while (*temp != '\0'){
+					if (*temp == '\n'){
+						*temp = ' ';
+					}
+					temp++;
+				}	
+			if ((n->link_data->source != NULL) && (n->link_data->source[0] == '#' )) {
+				   
+				/* link to anchor within the document */
+				if (strlen(temp_str->str) > 0) {
+					/* We have text before the link */
+					g_string_append_printf(out, "%s (", temp_str->str);
+				}
+				
+				if (n->link_data->label == NULL) {
+					if ((n->link_data->source !=  NULL) && (n->link_data->source[0] == '#' )) {
+						/* This link was specified as [](#bar) */
+						g_string_append(out,"\n\\begin_inset CommandInset ref");
+						g_string_append_printf(out,"\nLatexCommand formatted");
+						g_string_append_printf(out,"\nreference \"%s\"\n",n->link_data->source + 1);
+						g_string_append(out,"\n\\end_inset\n");
+
+					} else {
+                        g_string_append_printf(out, "\n\\begin_inset CommandInset href\nLatexCommand href\ntarget \"%s\"\n", n->link_data->source);
+						g_string_append(out, "\"\n\n\\end_inset\n");
+	
+					}
+				} else {
+					g_string_append(out,"\n\\begin_inset CommandInset ref");
+					g_string_append_printf(out,"\nLatexCommand formatted");
+					g_string_append_printf(out,"\nreference \"%s\"\n",n->link_data->source + 1);
+					g_string_append(out,"\n\\end_inset\n");
+				}
+				if (strlen(temp_str->str) > 0) {
+					g_string_append(out, ")");
+				}
+			} else if (strcmp(raw_str->str, n->link_data->source) == 0){
+				/* This is a <link> */
+	            g_string_append_printf(out, "\n\\begin_inset CommandInset href\nLatexCommand href\ntarget \"%s\"\n", n->link_data->source);
+				g_string_append_printf(out,"name \"%s\"",temp_str->str);
+				g_string_append(out, "\n\n\\end_inset\n");
+			} else if (strcmp(raw_str->str,&n->link_data->source[7]) == 0) {
+				/*This is a <mailto> */
+                g_string_append_printf(out, "\n\\begin_inset CommandInset href\nLatexCommand href\ntarget \"%s\"\n", n->link_data->source);
+				g_string_append_printf(out,"name \"%s\"",temp_str->str);
+				g_string_append(out,"\ntype \"mailto:\"");
+				g_string_append(out, "\n\n\\end_inset\n");
+			} else {
+				g_string_append_printf(out, "\n\\begin_inset CommandInset href\nLatexCommand href\ntarget \"%s\"\n", n->link_data->source);
+				g_string_append(out,"name \"");
+				
+				g_string_free(temp_str,TRUE);
+				temp_str = g_string_new("");
+				print_escaped_node_tree(out,n->children);
+                
+				g_string_append(out, "\"\n\n\\end_inset\n");
+				if (scratch->no_lyx_footnote == FALSE) {
+					g_string_append(out, "\n\\begin_inset Foot\nstatus collapsed\n\n\\begin_layout Plain Layout\n");
+					g_string_append(out, "\n\\begin_inset CommandInset href\nLatexCommand href\n");
+					g_string_append_printf(out,"\nname \"%s\"",n->link_data->source);
+					g_string_append_printf(out,"\ntarget \"%s\"",n->link_data->source);
+                    g_string_append(out,"\n\n\\end_inset");
+					g_string_append(out, "\n\\end_layout\n\n\\end_inset\n");
+				}
+			}
+			g_string_free(temp_str, TRUE);
+			g_string_free(raw_str, true);
+			n->link_data->attr = NULL;
+			break;
+		case ATTRKEY:
+			g_string_append_printf(out, " %s=\"%s\"", n->str,
+				n->children->str);
+			break;
+		case REFNAME:
+		case SOURCE:
+		case TITLE:
+			break;
+		case IMAGEBLOCK:
+		case IMAGE:
+#ifdef DEBUG_ON
+	fprintf(stderr, "print image\n");
+#endif
+			/* Do we have proper info? */
+			if ((n->link_data->label == NULL) &&
+			(n->link_data->source == NULL)) {
+				/* we seem to be a [foo][] style link */
+				/* so load a label */
+				temp_str = g_string_new("");
+				print_raw_node_tree(temp_str, n->children);
+				n->link_data->label = temp_str->str;
+				g_string_free(temp_str, FALSE);
+			}
+			/* Load reference data */
+			if (n->link_data->label != NULL) {
+				temp = strdup(n->link_data->label);
+				free_link_data(n->link_data);
+				n->link_data = extract_link_data(temp, scratch);
+				    
+				if (n->link_data == NULL) {
+					/* replace original text since no definition found */
+					g_string_append(out, "![");
+					print_lyx_node(out, n->children, scratch, FALSE);
+					g_string_append(out,"]");
+					if (n->children->next != NULL) {
+						g_string_append(out, "[");
+						print_lyx_node_tree(out, n->children->next, scratch, FALSE);
+						g_string_append(out,"]");
+					} else if (n->str != NULL) {
+						/* no title label, so see if we stashed str*/
+						g_string_append_printf(out, "%s", n->str);
+					} else {
+						g_string_append_printf(out, "[%s]",temp);
+					}
+					free(temp);
+					break;
+				}
+				free(temp);
+			}
+			
+			if (n->key == IMAGEBLOCK){
+				g_string_append(out,"\n\\begin_layout Standard"); /* needs to be in an environment */
+				g_string_append(out,"\n\\begin_inset Float figure");
+				g_string_append(out,"\nwide false");
+				g_string_append(out,"\nsideways false");
+				g_string_append(out,"\nstatus collapsed");
+				g_string_append(out, "\n\n\\begin_layout Plain Layout");
+			}
+			
+			g_string_append(out,"\n\\begin_inset Graphics");
+			
+			g_string_append_printf(out, "\n\t filename %s\n",n->link_data->source);
+
+#ifdef DEBUG_ON
+	fprintf(stderr, "attributes\n");
+#endif
+
+			if (n->link_data->attr != NULL) {
+				temp_node = node_for_attribute("height",n->link_data->attr);
+				if (temp_node != NULL)
+					height = correct_dimension_units(temp_node->children->str);
+				temp_node = node_for_attribute("width",n->link_data->attr);
+				if (temp_node != NULL)
+					width = correct_dimension_units(temp_node->children->str);
+			}
+				
+				if (width != NULL) {
+					if (width[strlen(width)-1] == '%') {
+						width[strlen(width)-1] = '\0';
+						g_string_append_printf(out, "\tlyxscale %s\n", width);
+						g_string_append_printf(out, "\tscale %s\n",width);
+					} else {
+						g_string_append_printf(out, "\twidth %s\n",width);
+					}
+				}
+				
+				if (height != NULL) {
+					if (height[strlen(height)-1] == '%') {
+						height[strlen(height)-1] = '\0';
+						g_string_append_printf(out, "\tlyxscale %s\n",height);
+						g_string_append_printf(out, "\tscale %s\n",height);
+					} else {
+						g_string_append_printf(out, "\theight %s\n",height);
+					}
+				}
+			g_string_append(out,"\n\\end_inset\n");
+			
+			if (n->key == IMAGEBLOCK) {
+				g_string_append(out,"\n\n\\end_layout\n");
+				if (n->children != NULL) {
+				g_string_append(out,"\n\\begin_layout Plain Layout");
+				g_string_append(out,"\n\\begin_inset Caption");
+				g_string_append(out,"\n\n\\begin_layout Plain Layout\n");
+					print_lyx_node_tree(out, n->children, scratch, FALSE);
+				g_string_append(out,"\n\\end_layout\n");
+			    g_string_append(out,"\n\\end_inset");
+				if (n->link_data->label != NULL) {
+					g_string_append(out,"\n\n\\begin_inset CommandInset label");
+					g_string_append(out,"\nLatexCommand label\n");
+					temp = label_from_string(n->link_data->label);
+				    g_string_append_printf(out, "\nname \"fig:%s\"",temp);
+					g_string_append(out,"\n\\end_inset");
+					free(temp);
+				}
+			    g_string_append(out,"\n\\end_layout\n");
+			    g_string_append(out,"\n\\end_inset\n");
+			}
+					
+				g_string_append(out, "\n\\end_layout\n");
+			}
+			
+			free(height);
+			free(width);
+			n->link_data->attr = NULL;	/* We'll delete these elsewhere */
+			break;
+#ifdef DEBUG_ON
+	fprintf(stderr, "finish image\n");
+#endif
+		case NOTEREFERENCE:
+			lev = note_number_for_node(n, scratch);
+			temp_node = node_for_count(scratch->used_notes, lev);
+			if (temp_node->key == GLOSSARYSOURCE) {
+				g_string_append(out,"\n\\begin_inset CommandInset nomenclature");
+			    g_string_append(out,"\nLatexCommand nomenclature");
+			    scratch->lyx_para_type = temp_node->key;
+				print_lyx_node_tree(out, temp_node->children, scratch, FALSE);
+				scratch->lyx_para_type = NO_TYPE; 
+				g_string_append(out, "\n\\end_inset\n");
+			} else {
+				g_string_append(out, "\n\\begin_inset Foot");
+				g_string_append(out,"\nstatus collapsed\n\n");
+				old_type = scratch->lyx_para_type;
+				scratch->lyx_para_type = PARA;
+				print_lyx_node_tree(out, temp_node->children, scratch, FALSE);
+				scratch->lyx_para_type = old_type;
+				g_string_append(out, "\n\n\\end_inset\n");
+			}
+			break;
+		case NOCITATION:
+		case CITATION:
+#ifdef DEBUG_ON
+	fprintf(stderr, "\nprint cite\n");
+#endif
+			if ((n->link_data != NULL) && (strncmp(n->link_data->label,"[#",2) == 0)) {
+				/* external citation (e.g. BibTeX) */
+				n->link_data->label[strlen(n->link_data->label)-1] = '\0';
+				if (n->key == NOCITATION) {
+					g_string_append(out,"\n\\begin_inset CommandInset citation");
+					g_string_append(out,"\nLatexCommand nocite");
+					g_string_append_printf(out,"\nkey \"%s\"",&n->str[2]);
+					g_string_append(out,"\n\n\\end_inset\n");
+				} else {
+					g_string_append(out, "<FAKE span class=\"externalcitation\">");
+					g_string_append(out, "</span>");
+				}
+			} else {
+#ifdef DEBUG_ON
+				fprintf(stderr, "internal cite\n");
+#endif
+				/* MMD citation, so output as footnote */
+				/* TODO: create separate stream from footnotes */
+				lev = note_number_for_label(n->link_data->label, scratch);
+				if (lev != 0) {
+#ifdef DEBUG_ON
+					fprintf(stderr, "matching cite found\n");
+#endif
+					temp_node = node_for_count(scratch->used_notes, lev);
+					/* flag that this is used as a citation */
+					temp_node->key = CITATIONSOURCE;
+					if (lev > scratch->max_footnote_num) {
+						scratch->max_footnote_num = lev;
+					}
+					if (n->key == NOCITATION) {
+						g_string_append(out,"\n\\begin_inset CommandInset citation");
+						g_string_append(out,"\nLatexCommand nocite");
+						g_string_append_printf(out,"\nkey \"%s\"",n->link_data->label);
+						g_string_append(out,"\n\n\\end_inset\n");
+					} else {
+						if (n->children != NULL) {
+							g_string_append(out,"\n\\begin_inset CommandInset citation");
+							g_string_append(out,"\nLatexCommand cite");
+							g_string_append(out, "\nafter \"");
+							print_lyx_node(out, n->children, scratch, FALSE);
+							g_string_append_printf(out,"\"\nkey \"%s\"",n->link_data->label);
+							g_string_append(out,"\n\n\\end_inset\n");
+						} else {
+							g_string_append(out,"\n\\begin_inset CommandInset citation");
+							g_string_append(out,"\nLatexCommand cite");
+							g_string_append_printf(out,"\nkey \"%s\"",n->link_data->label);
+							g_string_append(out,"\n\n\\end_inset\n");
+						}
+					}
+				} else {
+					/* not located -- this is external cite */
+#ifdef DEBUG_ON
+				fprintf(stderr, "no match for cite: '%s'\n",n->link_data->label);
+#endif
+					temp = n->link_data->label;
+					if (n->key == NOCITATION) {
+						g_string_append(out,"\n\\begin_inset CommandInset citation");
+						g_string_append(out,"\nLatexCommand nocite");
+						g_string_append_printf(out,"\nkey \"%s\"",n->link_data->label);
+						g_string_append(out,"\n\n\\end_inset\n");
+					} else {
+						if (n->children != NULL) {
+#ifdef DEBUG_ON
+				fprintf(stderr, "cite with children\n");
+#endif
+							if (strcmp(&temp[strlen(temp) - 1],";") == 0) {
+								g_string_append(out, " \\citet[");
+								temp[strlen(temp) - 1] = '\0';
+							} else {
+								g_string_append(out,"\n\\begin_inset CommandInset citation");
+							    g_string_append(out,"\nLatexCommand cite");
+							    g_string_append(out, "\nafter \"");	
+							}
+							print_lyx_node(out, n->children, scratch, FALSE);
+							g_string_append_printf(out,"\"\nkey \"%s\"",temp);
+							g_string_append(out,"\n\n\\end_inset\n");
+						} else {
+#ifdef DEBUG_ON
+				fprintf(stderr, "cite without children. locat:'%s'\n",n->str);
+#endif
+							if (strcmp(&temp[strlen(temp) - 1],";") == 0) {
+								temp[strlen(temp) - 1] = '\0';
+								g_string_append_printf(out, " \\citet{%s}",temp);
+							} else {
+								g_string_append(out,"\n\\begin_inset CommandInset citation");
+							    g_string_append(out,"\nLatexCommand cite");
+							    g_string_append_printf(out,"\nkey \"%s\"",temp);
+							    g_string_append(out,"\n\n\\end_inset\n");
+							}
+						}
+					}
+				}
+			}
+#ifdef DEBUG_ON
+		fprintf(stderr, "finish cite\n");
+#endif
+			break;
+		case VARIABLE:
+			temp = metavalue_for_key(n->str,scratch->result_tree);
+			if (temp == NULL) {
+				g_string_append_printf(out, "[%%%s]",n->str);
+			} else {
+				g_string_append_printf(out, temp);
+				free(temp);
+			}
+			break;
+		case GLOSSARYTERM:
+			if ((n->next != NULL) && (n->next->key == GLOSSARYSORTKEY) ) {
+				g_string_append(out, "\nprefix \"");
+				print_lyx_string(out, n->next->str, scratch,LYX_NONE);
+				g_string_append(out, "\"");
+			}
+			g_string_append(out,"\nsymbol \"");
+			print_latex_string(out, n->children->str, scratch);
+			g_string_append(out, "\"");
+			break;
+		case GLOSSARYSORTKEY:
+			break;
+		case CODE:
+			g_string_append(out, "\n\\family typewriter\n");
+			print_lyx_string(out, n->str, scratch,LYX_CODE);
+			g_string_append(out, "\n\\family default\n");
+			break;
+		case BLOCKQUOTEMARKER:  					
+		    print_lyx_node_tree(out, n->children, scratch, FALSE);
+			break;
+		case BLOCKQUOTE: /* can be nested - make it work like lists */
+		    old_type = scratch->lyx_para_type;
+			scratch->lyx_para_type = n->key;
+			scratch->lyx_level++;
+			if (scratch->lyx_level > 1){
+				g_string_append(out,"\n\\begin_deeper\n");
+			}
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+		    scratch->lyx_level--;
+		    if (scratch->lyx_level > 0){   
+		        g_string_append(out,"\n\\end_deeper\n");
+		    }
+			scratch->lyx_para_type = old_type;
+			break;
+		case RAW:
+			/* This shouldn't happen */
+			g_string_append(out, "RAW:");
+			g_string_append_printf(out,"%s",n->str);
+			break;
+		case HTML:
+			/* Handle HTML Reserved Characters */
+			if (strncmp(n->str,"&quot;",6) == 0){
+				g_string_append(out,"\"");
+				break;
+			} else if (strncmp(n->str,"&apos;",6) == 0){
+				g_string_append(out,"'");
+				break;
+			} else if (strncmp(n->str,"&amp;",5) == 0){
+				g_string_append(out,"&");
+				break;
+			} else if (strncmp(n->str,"&lt;",4) == 0){
+				g_string_append(out,"<");
+				break;
+			} else if (strncmp(n->str,"&gt;",4) == 0){
+				g_string_append(out,">");
+				break;
+			};
+			
+			/* don't print HTML block */
+			/* but do print HTML comments for raw LaTeX */
+			if (strncmp(n->str,"<!--",4) == 0) {
+				/* trim "-->" from end */
+				n->str[strlen(n->str)-3] = '\0';
+				g_string_append(out, "\n\\begin_inset ERT\nstatus collapsed\n\n\\begin_layout Plain Layout\n\n");
+                print_lyx_string(out,&n->str[4],scratch,LYX_NONE);				
+				g_string_append(out,"\n\n\\end_layout\n\\end_inset\n");
+			}
+			break;
+		case TERM:
+			scratch->lyx_definition_open = FALSE; /* and it is closed */
+			old_type = scratch->lyx_para_type;
+			scratch->lyx_para_type = n->key;
+			if (scratch->lyx_definition_hit){	
+			  g_string_append(out,"\n\\begin_layout Labeling");
+			  g_string_append(out,"\n\\labelwidthstring 00.00.0000\n");
+			  g_string_append(out,"\n\\series bold\n");
+			  scratch -> lyx_definition_hit = FALSE; /* waiting for it to start a new set of terms */
+		    } else { /* multiple terms, join with commas */
+		      	g_string_append(out,",");
+		      	g_string_append(out,"\n\\begin_inset space ~\n\\end_inset\n");
+		    }
+			temp_str = g_string_new("");
+			print_lyx_node_tree(temp_str, n->children, scratch, FALSE);
+		    /* replace spaces with protected spaces */
+				temp = temp_str->str;
+				while (*temp != '\0'){
+					if (*temp == ' '){
+						g_string_append(out,"\n\\begin_inset space ~\n\\end_inset\n");
+					} else{
+						g_string_append_printf(out,"%c",*temp);
+					}
+					temp++;
+				}
+			g_string_free(temp_str,TRUE);
+			scratch->lyx_para_type = old_type;
+			break;
+		case DEFINITION:
+			if (!scratch -> lyx_definition_hit){
+				g_string_append(out,"\n\\series default\n"); /* close bolding */
+			}
+			scratch -> lyx_definition_hit = TRUE;  /* have hit the definiton thus we can start a new one */
+			old_type = scratch->lyx_para_type;
+			scratch->lyx_para_type = n->key;
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+			scratch->lyx_para_type = old_type;
+			break;
+		case TABLE:
+			scratch->lyx_table_caption = NULL;
+			/* need to check the caption here in order to decide whether to increment the number of rows */
+			tcaption = n->children;
+			if (tcaption->key == TABLECAPTION) {
+	           scratch->lyx_table_caption = tcaption;
+			}
+			scratch->table_row = 0;
+			scratch->table_column = 0;
+			lyx_get_table_dimensions(n->children,&rows,&cols,scratch);
+			scratch->lyx_table_total_rows = rows;
+			if (scratch->lyx_table_caption != NULL){
+				rows++; /* caption goes on the first row */
+			}
+			scratch->lyx_table_total_cols = cols;
+			g_string_append(out,"\n\\begin_layout Standard");
+			g_string_append(out,"\n\\begin_inset Tabular");
+			g_string_append_printf(out,"\n<lyxtabular version=\"3\" rows=\"%d\" columns=\"%d\">",rows, cols);
+			g_string_append(out,"\n<features booktabs=\"true\" tabularvalignment=\"middle\" islongtable=\"true\" longtabularalignment=\"center\">");
+
+			print_lyx_node_tree(out, n->children, scratch, FALSE); /* table body */
+			g_string_append(out, "\n</lyxtabular>");
+			g_string_append(out,"\n\\end_inset");
+			g_string_append(out, "\n\\end_layout\n");
+			scratch->lyx_table_caption = NULL;
+			break;
+		case TABLESEPARATOR:
+			colwidth = 100/scratch->lyx_table_total_cols;
+			scratch->table_alignment = n->str;
+			for (i=0;i<scratch->lyx_table_total_cols;i++){
+			  temp_str = g_string_new("");
+			  char_temp = scratch->table_alignment[i];
+			  switch(char_temp){
+				case 'c':
+				case 'C':
+					g_string_append(temp_str,"center");
+					break;
+				case 'r':
+				case 'R':
+					g_string_append(temp_str,"right");
+					break;
+				case 'l':
+				case 'L':
+					g_string_append(temp_str,"left");
+				    break;
+		      }
+			  g_string_append_printf(out,"\n<column alignment=\"%s\" valignment=\"top\" width=\"%dcol%%\">",temp_str->str,colwidth);
+			  g_string_free(temp_str,TRUE);
+			}
+			break;
+		case TABLECAPTION:
+	        /* handled above */
+			break;
+		case TABLELABEL:
+			break;
+		case TABLEHEAD:
+			if (scratch-> lyx_table_caption != NULL){ /* if there is a caption */
+			  g_string_append(out,"\n<row caption=\"true\">");
+			  g_string_append(out,"\n<cell multicolumn=\"1\" alignment=\"left\" valignment=\"top\" usebox=\"none\">");
+			  g_string_append(out,"\n\\begin_inset Text\n");
+			  g_string_append(out,"\n\\begin_layout Plain Layout");
+			  g_string_append(out,"\n\\begin_inset Caption\n");
+			  g_string_append(out,"\n\\begin_layout Plain Layout\n");
+			  print_lyx_node_tree(out, scratch->lyx_table_caption->children, scratch, FALSE);
+			  if ((scratch->lyx_table_caption->children != NULL) && (scratch->lyx_table_caption->children->key == TABLELABEL)) {
+				temp = label_from_string(scratch->lyx_table_caption->children->str);
+			    } else {
+				temp = label_from_node_tree(scratch->lyx_table_caption->children);
+			    }
+			    g_string_append(out,"\n\\end_layout\n");
+			    g_string_append(out,"\n\\end_inset");
+			    g_string_append(out,"\n\n\\begin_inset CommandInset label");
+				g_string_append(out,"\nLatexCommand label\n");
+				g_string_append_printf(out, "\nname \"tab:%s\"",temp);
+				g_string_append(out,"\n\\end_inset");
+			  g_string_append(out,"\n\\end_layout\n");
+			  g_string_append(out,"\n\\end_inset\n");
+			  g_string_append(out,"\n</cell>");
+			  for (i=0;i<scratch->lyx_table_total_cols-1;i++){
+			  	g_string_append(out,"\n<cell multicolumn=\"2\" alignment=\"center\" valignment=\"top\" topline=\"true\" bottomline=\"true\" leftline=\"true\" usebox=\"none\">");
+			  	g_string_append(out,"\n\\begin_inset Text\n");
+			  	g_string_append(out,"\n\\begin_layout Plain Layout\n");
+			  	g_string_append(out,"\n\\end_layout\n");
+			  	g_string_append(out,"\n\\end_inset");
+			  	g_string_append(out,"\n</cell>");
+			  }
+			  g_string_append(out,"\n</row>");
+			  free(temp); 
+			}
+			scratch->lyx_table_need_line = TRUE;
+			scratch->lyx_in_header = TRUE;
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+			scratch->lyx_in_header = FALSE;		
+			break;
+		case TABLEBODY:
+			scratch->lyx_table_need_line = TRUE;
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+			break;
+		case TABLEROW:
+			if (scratch->lyx_in_header){
+			    g_string_append(out, "\n<row endhead=\"true\" endfirsthead=\"true\">");	
+			} else {
+		     	g_string_append(out, "\n<row>");
+		    }
+			scratch->table_column = 0;
+			print_lyx_node_tree(out, n->children, scratch, FALSE);
+			g_string_append(out,"\n</row>");
+			scratch->lyx_table_need_line = FALSE;
+			scratch->table_row++;
+			break;
+		case TABLECELL:
+			temp_str = g_string_new("");
+			char_temp = scratch->table_alignment[scratch->table_column];
+			switch(char_temp){
+				case 'c':
+				case 'C':
+					g_string_append(temp_str,"center");
+					break;
+				case 'r':
+				case 'R':
+					g_string_append(temp_str,"right");
+					break;
+				case 'l':
+				case 'L':
+					g_string_append(temp_str,"left");
+				    break;
+			}
+			multicol = 1;
+			if ((n->children != NULL) && (n->children->key == CELLSPAN)){
+				multicol = (int)strlen(n->children->str)+1;
+			}
+			for(i=1;i<=multicol;i++){
+
+	            g_string_append(out,"\n<cell" ) ;
+	            if (multicol > 1) {
+					g_string_append_printf(out, " multicolumn=\"%d\"",i);
+				}
+				g_string_append_printf(out, " alignment=\"%s\"",temp_str->str);
+				g_string_append(out, " valignment=\"top\"");
+				
+				if (scratch->lyx_table_need_line){
+				   g_string_append(out," topline=\"true\"" );
+			    }
+			    if (scratch->table_row >= scratch->lyx_table_total_rows-1){
+			       g_string_append(out," bottomline=\"true\"" );
+			    }
+			    
+			    g_string_append(out," usebox=\"none\"");
+			    
+			    g_string_append(out,">");
+			    
+			    g_string_append(out,"\n\\begin_inset Text");
+			    g_string_append(out,"\n\n\\begin_layout Plain Layout\n");
+			    
+				print_lyx_node_tree(out, n->children, scratch, FALSE);
+				
+				g_string_append(out,"\n\\end_layout\n");
+			    g_string_append(out,"\n\n\\end_inset");
+			    g_string_append(out,"\n</cell>");
+		   }
+			g_string_free(temp_str,TRUE);
+			scratch->table_column++;
+			break;
+		case CELLSPAN:
+			break;
+		case GLOSSARYSOURCE: /* handled inline */
+			break;
+		case NOTESOURCE: /* handled inline */
+		    break;
+		case CITATIONSOURCE:
+			scratch->lyx_para_type = n-> key;
+			print_lyx_node(out, n->children, scratch, FALSE);
+			break;
+		case SOURCEBRANCH:
+			fprintf(stderr,"SOURCEBRANCH\n");
+			break;
+		case NOTELABEL:
+			break;
+		case SUPERSCRIPT:
+			g_string_append_printf(out, "\n\\begin_inset script superscript\n\n\\begin_layout Plain Layout\n%s\n\\end_layout\n\n\\end_inset\n",n->str);
+			break;
+		case SUBSCRIPT:
+			g_string_append_printf(out, "\n\\begin_inset script subscript\n\n\\begin_layout Plain Layout\n%s\n\\end_layout\n\n\\end_inset\n",n->str);
+			break;
+		case KEY_COUNTER:
+			break;
+		default:
+			fprintf(stderr, "print_lyx_node encountered unknown node key = %d\n",n->key);
+			exit(EXIT_FAILURE);
+	}
+}
+
+/* print_lyx_endnotes */
+void print_lyx_endnotes(GString *out, scratch_pad *scratch) {
+	node *temp_node;
+	scratch->used_notes = reverse_list(scratch->used_notes);
+	node *note = scratch->used_notes;
+#ifdef DEBUG_ON
+	fprintf(stderr, "start endnotes\n");
+#endif
+
+    	    /* Handle Glossary */
+    temp_node = note;
+    while (temp_node != NULL){
+    	if(temp_node->key == GLOSSARYSOURCE){
+    	g_string_append(out,"\n\\begin_layout Standard");
+    	g_string_append(out,"\n\\begin_inset CommandInset nomencl_print");
+    	g_string_append(out,"\nLatexCommand printnomenclature");
+    	g_string_append(out,"\nset_width \"auto\"\n");
+    	g_string_append(out,"\n\\end_inset\n");
+    	g_string_append(out,"\n\\end_layout\n");
+    	break;
+        }
+		temp_node = temp_node->next;
+	}
+
+	if (note == NULL)
+		return;
+	
+	note = scratch->used_notes;
+	
+#ifdef DEBUG_ON
+	fprintf(stderr, "there are endnotes to print\n");
+#endif
+
+	while ( note != NULL) {
+		if (note->key == KEY_COUNTER) {
+			note = note->next;
+			continue;
+		}
+		
+		if (note->key == CITATIONSOURCE) {
+			g_string_append(out, "\n\\begin_layout Bibliography\n");
+			g_string_append(out,"\\begin_inset CommandInset bibitem\n");
+			g_string_append(out,"LatexCommand bibitem\n");
+			g_string_append_printf(out, "key \"%s\"\n", note->str);
+			g_string_append_printf(out, "label \"%s\"\n", note->str);
+			g_string_append(out,"\n\\end_inset\n");
+			print_lyx_node(out, note, scratch, FALSE);
+			g_string_append(out,"\n\\end_layout\n");
+		} else {
+			/* footnotes handled elsewhere */
+		}
+
+		note = note->next;
+	}
+	
+	
+#ifdef DEBUG_ON
+	fprintf(stderr, "\n\\end_layout\n");
+#endif
+}
+
+/* print_lyx_localized_typography -- convert to "smart" typography */
+void print_lyx_localized_typography(GString *out, unsigned char character, scratch_pad *scratch) {
+	if (!extension(EXT_SMART, scratch->extensions)) {
+		g_string_append_c(out, character);
+		return;
+	}
+	switch (character) {
+		case LSQUOTE:
+		case 0x91:
+			switch (scratch->language) {
+				case SWEDISH:
+					g_string_append(out, "'");
+					break;
+				case FRENCH:
+					g_string_append(out,"'");
+					break;
+				case GERMAN:
+					g_string_append(out,"‚");
+					break;
+				case GERMANGUILL:
+					g_string_append(out,"›");
+					break;
+				default:
+					g_string_append(out,"\n\\begin_inset Quotes els\n\\end_inset\n");
+				}
+			break;
+		case RSQUOTE:
+		case 0x92:
+			switch (scratch->language) {
+				case GERMAN:
+					g_string_append(out,"`");
+					break;
+				case GERMANGUILL:
+					g_string_append(out,"‹");
+					break;
+				default:
+				g_string_append(out,"\n\\begin_inset Quotes ers\n\\end_inset\n");
+				}
+			break;
+		case APOS:
+			g_string_append(out,"'");
+			break;
+		case LDQUOTE:
+		case 0x93:
+			switch (scratch->language) {
+				case DUTCH:
+				case GERMAN:
+					g_string_append(out,"„");
+					break;
+				case GERMANGUILL:
+					g_string_append(out,"»");
+					break;
+				case FRENCH:
+					g_string_append(out,"«");
+					break;
+				case SWEDISH:
+					g_string_append(out, "''");
+					break;
+				default:
+					g_string_append(out,"\n\\begin_inset Quotes eld\n\\end_inset\n");
+				}
+			break;
+		case RDQUOTE:
+		case 0x94:
+			switch (scratch->language) {
+				case SWEDISH:
+				case DUTCH:
+					g_string_append(out,"''");
+					break;
+				case GERMAN:
+					g_string_append(out,"``");
+					break;
+				case GERMANGUILL:
+					g_string_append(out,"«");
+					break;
+				case FRENCH:
+					g_string_append(out,"»");
+					break;
+				default:
+					g_string_append(out,"\n\\begin_inset Quotes erd\n\\end_inset\n");
+				}
+			break;
+		case NDASH:
+		case 0x96:
+			g_string_append(out,"--");
+			break;
+		case MDASH:
+		case 0x97:
+			g_string_append(out,"---");
+			break;
+		case ELLIP:
+		case 0x85:
+			if(scratch->lyx_para_type != GLOSSARYSOURCE){
+			  g_string_append(out,"\n\\SpecialChar \\ldots{}\n");
+		    } else{
+		      g_string_append(out,"...");
+		    }
+			break;
+			default:;
+	}
+}
+
+/* print_lyx_string - print string, escaping and formatting for LYX */
+void print_lyx_string(GString *out, char *str, scratch_pad *scratch, short environment) {
+	char *tmp;
+	unsigned char extended_character;
+	if (str == NULL)
+		return;
+	if (environment == LYX_PLAIN) {
+	   g_string_append(out,"\n\\begin_layout Plain Layout\n\n");
+    }   
+	while (*str != '\0') {
+		/* first look for unicode so it doesn't get caught in the "smart quote" processing */
+		/* will use a huristic of looking for a sequence that begins with two bytes of */
+		/* the format 11xxxxxx 10xxxxxxxx to indicate a unicode sting */
+		/* this is Ok if the second byte is the terminator ('\0') because it is all zeros and won't match */
+		if ((((unsigned char)*str & 0xc0) == 0xc0) && ((((unsigned char)*(str+1))  & 0xc0) == 0x80)) { /* hit unicode (huristic */
+		   g_string_append_c(out, *str);
+		   str++;
+		   while ((((unsigned char)*str != '\0')) && (((unsigned char)*str & 0xc0) == 0x80)){
+		   	g_string_append_c(out,*str); /* send out the other bytes */
+		   	str++;
+		   }
+		} else {
+		switch ((unsigned char)*str) {  /* cast to handle the "smart quotes" outside the ASCII range - they are in there */
+			case '\\':
+				g_string_append(out,"\n\\backslash\n\n");
+				break;
+			case '\"':
+				  if (environment == LYX_PLAIN){
+				  	g_string_append(out,"\"");
+				  } else {
+                    g_string_append(out,"\n\\begin_inset Quotes erd\n\\end_inset\n");
+                  }
+				break;
+			case '\n':
+				 if(environment == LYX_PLAIN) {
+					if (*(str+1) == '\0'){ /* skip last new line */
+					break;
+					}
+				    g_string_append(out,"\n\\end_layout\n\n\\begin_layout Plain Layout\n\n");
+			    } else {
+	  				tmp = str;
+					tmp--;
+					if (*tmp == ' ') {
+						g_string_append(out,"\n");
+					} else {
+						g_string_append(out, "\n "); /* add a space */
+					}
+			    }
+				break;
+			case '<': /* look for HTML comment LaTeX escape */
+			    if ( (environment != LYX_CODE) && (environment != LYX_PLAIN) && (strncmp(str,"<!--",4) == 0)){
+			       str+=4; /* move past delimeter */
+			       	g_string_append(out, "\n\\begin_inset ERT\nstatus collapsed\n\n\\begin_layout Plain Layout\n\n");
+                    while(strncmp(str,"-->",3) !=0){
+                    	switch (*str){
+                    	  case '\\':
+				            g_string_append(out,"\n\\backslash\n\n");
+				            break;
+			              case '\"':
+                            g_string_append(out,"\n\\begin_inset Quotes erd\n\\end_inset\n");
+				            break;
+                    	  default: 
+                    	    g_string_append_c(out,*str);
+                    }
+                    	str++;
+                    }
+                    str+=2; /* and past the end delimeter */
+				    g_string_append(out,"\n\n\\end_layout\n\\end_inset\n");
+			    }
+			    else {
+			    	g_string_append_c(out, *str);	
+			    }
+			    break;
+			/* handle "smart Quotes" and other "non ASCII" characters */
+			case 0x91:
+			case 0x92:
+			case 0x93:
+			case 0x94:
+			case 0x96:
+			case 0x97:
+			case 0x85:
+				extended_character = str[0];
+				print_lyx_localized_typography(out,extended_character,scratch);
+				break;
+			default:
+				g_string_append_c(out, *str);
+			}	
+		str++;
+	}
+}
+	if (environment == LYX_PLAIN) {
+	   g_string_append(out,"\n\\end_layout\n");
+	   }
+}
+
+/* print_lyx_url - print url, escaping for LYX */
+void print_lyx_url(GString *out, char *str, scratch_pad *scratch) {
+	if (str == NULL)
+		return;
+	while (*str != '\0') {
+		switch (*str) {
+			case '$': case '%': case '!':
+			case '&': case '_': case '#':
+				g_string_append_printf(out, "\\%c", *str);
+				break;
+			case '^':
+				g_string_append(out, "\\^{}");
+				break;
+			default:
+				g_string_append_c(out, *str);
+			}
+		str++;
+	}
+}
+
+/* lyx_get_table_dimensions - find the dimensions of a table (rows and columns) */
+void lyx_get_table_dimensions(node* list, int *rows, int *cols, scratch_pad *scratch){
+	int tmp_rows;
+	int tmp_cols;
+	*rows = 0;
+	*cols = 0;
+	tmp_rows = 0;
+	tmp_cols = 0;
+	while (list != NULL) {
+		switch (list->key){
+			case TABLEHEAD:
+			case TABLEBODY:
+				lyx_get_table_dimensions(list->children, &tmp_rows, &tmp_cols, scratch);
+				*rows += tmp_rows;
+				if (tmp_cols > *cols) {*cols = tmp_cols;};
+				break;
+			case TABLEROW:
+				(*rows)++;
+				lyx_get_table_dimensions(list->children, &tmp_rows, &tmp_cols,scratch);
+				if (tmp_cols>*cols) {*cols = tmp_cols;};
+				break;
+			case TABLECELL:
+				(*cols)++;
+			    break;
+		}
+		list = list->next;
+	}
+}
+/* add_prefixes -- go through node tree and find elements created from headers, figures, and tables
+                   add the prefix so LyX can create proper references */
+void add_prefixes(node *list, node *root, scratch_pad *scratch) {
+	char *label;
+	GString *pound_label;
+	int  lev;
+	
+		
+	while (list != NULL) {
+		switch (list->key) {
+			case H1: case H2: case H3: case H4: case H5: case H6:
+				lev = list->key - H1 + scratch->baseheaderlevel;
+				if (lev > 7)
+				lev = 7;	/* Max at level 7 */
+				if (list->children->key != AUTOLABEL) {
+					label = label_from_node_tree(list->children);
+				} else{
+					label = label_from_string(list->children->str);
+				}
+				
+					/* update any links in the tree */
+				
+				pound_label = g_string_new("#");
+                g_string_append(pound_label,label);
+				update_link_source(pound_label->str,heading_name[lev-1]->str,root);
+				
+				
+				/* and any in the "links" list */
+					
+				update_links(pound_label->str,heading_name[lev-1]->str,scratch);
+				
+				g_string_free(pound_label,TRUE);
+				free(label);
+				break;
+			case TABLE:
+				if (list->children->key == TABLECAPTION) {
+					if (list->children->children->key == TABLELABEL){
+					  label = label_from_string(list->children->children->str);
+				    } else {
+				      label = label_from_node_tree(list->children->children);
+				    }
+			   		pound_label = g_string_new("#");
+                    g_string_append(pound_label,label);
+                    update_links(pound_label->str,"tab",scratch);
+                    g_string_free(pound_label,TRUE);
+					free(label);
+					
+				}
+				break;
+			case IMAGE:
+			case IMAGEBLOCK:
+				if ((list->link_data != NULL) && (list->link_data->label != NULL)) {
+                    label = label_from_string(list->link_data->label);
+                    pound_label = g_string_new("#");
+                    g_string_append(pound_label,label);
+                    update_link_source(pound_label->str,"fig",root);
+                    g_string_free(pound_label,TRUE);
+                    free(label);
+				}
+				break;
+			case HEADINGSECTION:
+				add_prefixes(list->children, root, scratch);
+				break;
+			default:
+				break;
+		}
+		list = list->next;
+	}
+}
+void update_links(char *source,char *prefix, scratch_pad *scratch) {
+	node* n = scratch->links;
+	link_data *l;
+	char* new_source;
+	while (n != NULL) {
+		l = n->link_data;
+			if ((l != NULL) && (l->source != NULL)) {
+	   	  		if (strcmp (l->source,source) == 0){
+	   	  			new_source = prefix_label(prefix,l->source,TRUE);
+					free(l->source);
+		    		l->source = strdup(new_source);
+					free(new_source);
+	   	  		}
+		}
+		n = n->next;
+	}
+}
+
+/* update_link_source - walk the tree and add prefixes */
+void update_link_source(char *source, char *prefix,node *n){
+	 link_data *l;
+	 char* new_source;
+	 while(n != NULL){
+	   	if (n->key == LINK){
+	   		l = n->link_data;
+	   		if ((l != NULL) && (l->source != NULL)) {
+	   	  		if (strcmp (l->source,source) == 0){
+	   	  			new_source = prefix_label(prefix,l->source,TRUE);
+					free(l->source);
+		    		l->source = strdup(new_source);
+					free(new_source);
+	   	  		}
+	   		}
+		}
+		if(n->children != NULL) {
+		   update_link_source(source,prefix,n->children);
+		}
+	 n = n-> next;	
+	 }
+	
+}
+
+/* prefix_label - Builds a label with a prefix - Returns a null-terminated string,
+	which must be freed after use. */
+char *prefix_label(char *prefix, char *label, bool pound) {
+	char* function_result;
+	char short_prefix[6];
+	int i;
+	strncpy(short_prefix,prefix,5);
+	short_prefix[5]= '\0'; /* no terminator if strncpy ends because of length */
+	for(i = 0; short_prefix[i]; i++){
+  		short_prefix[i] = tolower(short_prefix[i]);
+	}
+	GString *result = g_string_new("");
+	if (label[0]== '#'){
+		g_string_append(result,label+1);  /* drop the pound */
+	} else{
+		g_string_append(result,label);
+	}
+	g_string_prepend(result,":"); /* prefix colon */
+	g_string_prepend(result,short_prefix); /* add the prefix */
+	if (pound){
+		g_string_prepend(result,"#"); /* add back in the pound if needed */
+	}
+	function_result = result->str;
+	g_string_free(result,FALSE); /* sending back the string */
+	return function_result;
+}
+
+/* print_escaped_node_tree - print a list of elements as original text */
+void print_escaped_node_tree(GString *out, node *n) {
+#ifdef DEBUG_ON
+	if (n != NULL)
+		fprintf(stderr, "start print_escaped_node_tree: '%d'\n",n->key);
+#endif
+	while (n != NULL) {
+		print_escaped_node(out, n);
+		n = n->next;
+	}
+#ifdef DEBUG_ON
+	if (n != NULL)
+		fprintf(stderr, "finish print_escaped_node_tree: '%d'\n",n->key);
+#endif
+}
+
+/* print_escaped_node - print an element as original text with LyX escaping*/
+void print_escaped_node(GString *out, node *n) {
+	  switch (n->key) {
+			case STR:
+				g_string_append(out,n->str);
+				break;
+			case SPACE:
+				g_string_append(out," ");
+				break;
+			case APOSTROPHE:
+				g_string_append(out,"'");
+				break;
+			case SINGLEQUOTED:
+				g_string_append(out,"'");
+				print_escaped_node_tree(out,n->children);
+				g_string_append(out,"'");
+				return;
+			case DOUBLEQUOTED:
+				g_string_append(out,"\"");
+				print_escaped_node_tree(out,n->children);
+				g_string_append(out,"\"");
+				return;
+			case ELLIPSIS:
+				g_string_append(out,"...");
+				break;
+			case ENDASH:
+				g_string_append(out,"--");
+				break;
+			case EMDASH:
+				g_string_append(out,"---");
+			default:
+				break;
+	  }
+    	print_escaped_node_tree(out, n->children);
+	}