mspire 0.10.5 → 0.10.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: b4dcc320a2ee49559d1d64c2c42f1d647a33901c
-  data.tar.gz: 2562f3e4bcd33b71da96151cb6fc7cae172277a4
+  metadata.gz: 727385462205a100b10c44928ad06c5ce6dc527d
+  data.tar.gz: 616cb45a4f221cac4885a6eb6e9a76207a97e82b
 SHA512:
-  metadata.gz: 7f680070a1151cd563e2ade3b3ced3691f630ea42a67bbef4c866c6edfb163356f249ea519eefebd57149f0a2a4b23f8a16a964274d8df6a141edb6b79c4df29
-  data.tar.gz: eca1464a336117c98312e71c392761d7d3dd4b3e58528e8da05647319eb516f958bd248ba2a86db702d1010f896329ab5a8513b287da1ba5ef4d014cc0d6f90f
+  metadata.gz: 3cc85b9cb00d4eebdc8f9f20c428de8bd4ae1882ce524980b2c1f57be92c9a4a39b4f3096f5088eb2876328d3dc87ebd69c90044b659753aa4e28b1079ceacfb
+  data.tar.gz: 6a9b33c7a86b63e91ad330fbc4b76ffc2f66d65755d2c947983c688faef59f47f6eb353a69d01c88d2d2f12ff99885658676d5742438dfdadf1698dde0797670

data/lib/mspire/mzml/reader.rb

@@ -43,9 +43,15 @@ module Mspire::Mzml::Reader
   def get_default_data_processing_ids(io, index_list, lookback=300)
     hash = {}
     index_list.each_pair do |name, index|
-      io.bookmark do |io|
-        io.pos = index[0] - lookback 
-        hash[name] = io.read(lookback)[/<#{name}List.*defaultDataProcessingRef=['"](.*?)['"]/m, 1]
+      if index.size > 0
+        # ^ we cannot quickly retrieve a defaultDataProcessingRef unless there
+        # is at least one spectrum/chromatogram to start with.  However, if
+        # there is no spectrum/chromatogram, then the defaultDataProcessingRef
+        # will not be needed either.
+        io.bookmark do |io|
+          io.pos = index[0] - lookback 
+          hash[name] = io.read(lookback)[/<#{name}List.*defaultDataProcessingRef=['"](.*?)['"]/m, 1]
+        end
       end
     end
     hash

data/lib/mspire/version.rb

@@ -1,3 +1,3 @@
 module Mspire
-  VERSION = "0.10.5"
+  VERSION = "0.10.6"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: mspire
 version: !ruby/object:Gem::Version
-  version: 0.10.5
+  version: 0.10.6
 platform: ruby
 authors:
 - John T. Prince
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-01-14 00:00:00.000000000 Z
+date: 2014-02-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: nokogiri