mspire 0.10.1 → 0.10.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/mspire/mzml/index_list.rb +5 -3
- data/lib/mspire/mzml/reader.rb +1 -1
- data/lib/mspire/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: c5caadb4ca2d21cd1e38f7c1c0cd1c3b0b202a97
|
|
4
|
+
data.tar.gz: 833962e9730b48a8d4c88558f237c7b780655187
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 494e529d32f71331b02194356fd5308e30ac43c1c25562d70fb48053fbc4ef576f60e623081dd4d0d71fe4f88df7c08e2e96388b858a40df927f76cacb8789c4
|
|
7
|
+
data.tar.gz: b00b40b6dd458206035821e34f89ebbecbc12281c63d470862355d3831d88387b28d24ded8971c6d4285e72372b806aeb3e50b153a30e82d999054560cec70f8
|
|
@@ -63,9 +63,11 @@ module Mspire
|
|
|
63
63
|
index = Index.new
|
|
64
64
|
index.name = index_n['name'].to_sym
|
|
65
65
|
ids = []
|
|
66
|
-
index_n.children.
|
|
67
|
-
index
|
|
68
|
-
|
|
66
|
+
index_n.children.each do |offset_n|
|
|
67
|
+
if offset_n.name == 'offset' # <- pwiz sometimes makes an index with no offsets, in violation of the mzML 1.1 schema--this simple check circumvents their mistake
|
|
68
|
+
index << offset_n.text.to_i
|
|
69
|
+
ids << offset_n['idRef']
|
|
70
|
+
end
|
|
69
71
|
end
|
|
70
72
|
index.ids = ids
|
|
71
73
|
index
|
data/lib/mspire/mzml/reader.rb
CHANGED
|
@@ -40,7 +40,7 @@ module Mspire::Mzml::Reader
|
|
|
40
40
|
|
|
41
41
|
# returns a hash keyed by :spectrum or :chromatogram that gives the id
|
|
42
42
|
# (aka ref) as a string.
|
|
43
|
-
def get_default_data_processing_ids(io, index_list, lookback=
|
|
43
|
+
def get_default_data_processing_ids(io, index_list, lookback=300)
|
|
44
44
|
hash = {}
|
|
45
45
|
index_list.each_pair do |name, index|
|
|
46
46
|
io.bookmark do |io|
|
data/lib/mspire/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: mspire
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.10.
|
|
4
|
+
version: 0.10.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- John T. Prince
|
|
@@ -9,7 +9,7 @@ authors:
|
|
|
9
9
|
autorequire:
|
|
10
10
|
bindir: bin
|
|
11
11
|
cert_chain: []
|
|
12
|
-
date: 2013-10-
|
|
12
|
+
date: 2013-10-02 00:00:00.000000000 Z
|
|
13
13
|
dependencies:
|
|
14
14
|
- !ruby/object:Gem::Dependency
|
|
15
15
|
name: nokogiri
|