mspire-mascot-dat 0.0.1
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- data/.document +5 -0
- data/.rspec +1 -0
- data/LICENSE.txt +21 -0
- data/README.md +46 -0
- data/Rakefile +39 -0
- data/VERSION +1 -0
- data/lib/mspire/mascot/dat/index.rb +93 -0
- data/lib/mspire/mascot/dat/peptide.rb +95 -0
- data/lib/mspire/mascot/dat/query.rb +69 -0
- data/lib/mspire/mascot/dat.rb +59 -0
- data/mspire-mascot-dat.gemspec +70 -0
- data/spec/mspire/mascot/dat/index_spec.rb +44 -0
- data/spec/mspire/mascot/dat/peptide_spec.rb +24 -0
- data/spec/mspire/mascot/dat/query_spec.rb +33 -0
- data/spec/mspire/mascot/dat_spec.rb +94 -0
- data/spec/reference/dat_format_reference.md +667 -0
- data/spec/reference/two_spectra_decoy_F004129.png +0 -0
- data/spec/reference/two_spectra_no_decoy_F004128.png +0 -0
- data/spec/spec_helper.rb +11 -0
- data/spec/testfiles/F004128.dat +897 -0
- data/spec/testfiles/F004129.dat +1259 -0
- data/spec/testfiles/two_spectra.mgf +864 -0
- metadata +133 -0
metadata
ADDED
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@@ -0,0 +1,133 @@
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--- !ruby/object:Gem::Specification
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name: mspire-mascot-dat
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version: !ruby/object:Gem::Version
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version: 0.0.1
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5
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prerelease:
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6
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platform: ruby
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authors:
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- John T. Prince
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9
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autorequire:
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10
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bindir: bin
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11
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cert_chain: []
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12
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date: 2013-03-28 00:00:00.000000000 Z
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dependencies:
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14
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- !ruby/object:Gem::Dependency
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name: elif
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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19
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- - ~>
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20
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- !ruby/object:Gem::Version
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21
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version: 0.1.0
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type: :runtime
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prerelease: false
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24
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version_requirements: !ruby/object:Gem::Requirement
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25
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none: false
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26
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requirements:
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27
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+
- - ~>
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28
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- !ruby/object:Gem::Version
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29
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version: 0.1.0
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30
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+
- !ruby/object:Gem::Dependency
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31
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name: rspec
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32
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requirement: !ruby/object:Gem::Requirement
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33
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none: false
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34
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requirements:
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35
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+
- - ~>
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36
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+
- !ruby/object:Gem::Version
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37
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version: 2.8.0
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38
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type: :development
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39
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+
prerelease: false
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40
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+
version_requirements: !ruby/object:Gem::Requirement
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41
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none: false
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42
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requirements:
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43
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+
- - ~>
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44
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- !ruby/object:Gem::Version
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45
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version: 2.8.0
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46
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+
- !ruby/object:Gem::Dependency
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47
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name: rdoc
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48
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requirement: !ruby/object:Gem::Requirement
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49
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none: false
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50
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requirements:
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51
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+
- - ~>
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52
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+
- !ruby/object:Gem::Version
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53
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version: '3.12'
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54
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type: :development
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55
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prerelease: false
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56
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+
version_requirements: !ruby/object:Gem::Requirement
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57
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none: false
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58
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requirements:
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59
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+
- - ~>
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60
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- !ruby/object:Gem::Version
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61
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version: '3.12'
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62
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+
- !ruby/object:Gem::Dependency
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63
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name: jeweler
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64
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requirement: !ruby/object:Gem::Requirement
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65
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none: false
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66
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requirements:
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67
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+
- - ~>
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68
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+
- !ruby/object:Gem::Version
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69
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version: 1.8.4
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70
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type: :development
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71
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prerelease: false
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72
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+
version_requirements: !ruby/object:Gem::Requirement
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73
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none: false
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74
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requirements:
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75
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+
- - ~>
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76
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- !ruby/object:Gem::Version
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77
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version: 1.8.4
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78
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description: Reads mascot dat files with gusto for mspire library.
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79
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email: jtprince@gmail.com
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80
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executables: []
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81
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extensions: []
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82
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extra_rdoc_files:
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83
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- LICENSE.txt
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84
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- README.md
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85
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files:
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86
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- .document
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87
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- .rspec
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88
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- LICENSE.txt
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89
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- README.md
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90
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- Rakefile
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91
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- VERSION
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92
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- lib/mspire/mascot/dat.rb
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93
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- lib/mspire/mascot/dat/index.rb
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94
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- lib/mspire/mascot/dat/peptide.rb
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95
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- lib/mspire/mascot/dat/query.rb
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96
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- mspire-mascot-dat.gemspec
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97
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- spec/mspire/mascot/dat/index_spec.rb
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98
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- spec/mspire/mascot/dat/peptide_spec.rb
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99
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- spec/mspire/mascot/dat/query_spec.rb
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100
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- spec/mspire/mascot/dat_spec.rb
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101
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- spec/reference/dat_format_reference.md
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102
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- spec/reference/two_spectra_decoy_F004129.png
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103
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- spec/reference/two_spectra_no_decoy_F004128.png
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104
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- spec/spec_helper.rb
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105
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- spec/testfiles/F004128.dat
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106
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- spec/testfiles/F004129.dat
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107
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- spec/testfiles/two_spectra.mgf
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108
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homepage: http://github.com/princelab/mspire-mascot-dat
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109
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licenses:
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110
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- MIT
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111
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post_install_message:
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112
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rdoc_options: []
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113
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require_paths:
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114
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- lib
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115
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required_ruby_version: !ruby/object:Gem::Requirement
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116
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none: false
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117
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requirements:
|
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118
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- - ! '>='
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119
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+
- !ruby/object:Gem::Version
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120
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version: '0'
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121
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required_rubygems_version: !ruby/object:Gem::Requirement
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122
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none: false
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123
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requirements:
|
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124
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- - ! '>='
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125
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- !ruby/object:Gem::Version
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126
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version: '0'
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127
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requirements: []
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128
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rubyforge_project:
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129
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rubygems_version: 1.8.23
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130
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signing_key:
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131
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specification_version: 3
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132
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summary: Reads mascot dat files for mspire library.
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133
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test_files: []
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