mspire-mascot-dat 0.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.document +5 -0
- data/.rspec +1 -0
- data/LICENSE.txt +21 -0
- data/README.md +46 -0
- data/Rakefile +39 -0
- data/VERSION +1 -0
- data/lib/mspire/mascot/dat/index.rb +93 -0
- data/lib/mspire/mascot/dat/peptide.rb +95 -0
- data/lib/mspire/mascot/dat/query.rb +69 -0
- data/lib/mspire/mascot/dat.rb +59 -0
- data/mspire-mascot-dat.gemspec +70 -0
- data/spec/mspire/mascot/dat/index_spec.rb +44 -0
- data/spec/mspire/mascot/dat/peptide_spec.rb +24 -0
- data/spec/mspire/mascot/dat/query_spec.rb +33 -0
- data/spec/mspire/mascot/dat_spec.rb +94 -0
- data/spec/reference/dat_format_reference.md +667 -0
- data/spec/reference/two_spectra_decoy_F004129.png +0 -0
- data/spec/reference/two_spectra_no_decoy_F004128.png +0 -0
- data/spec/spec_helper.rb +11 -0
- data/spec/testfiles/F004128.dat +897 -0
- data/spec/testfiles/F004129.dat +1259 -0
- data/spec/testfiles/two_spectra.mgf +864 -0
- metadata +133 -0
metadata
ADDED
|
@@ -0,0 +1,133 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: mspire-mascot-dat
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
version: 0.0.1
|
|
5
|
+
prerelease:
|
|
6
|
+
platform: ruby
|
|
7
|
+
authors:
|
|
8
|
+
- John T. Prince
|
|
9
|
+
autorequire:
|
|
10
|
+
bindir: bin
|
|
11
|
+
cert_chain: []
|
|
12
|
+
date: 2013-03-28 00:00:00.000000000 Z
|
|
13
|
+
dependencies:
|
|
14
|
+
- !ruby/object:Gem::Dependency
|
|
15
|
+
name: elif
|
|
16
|
+
requirement: !ruby/object:Gem::Requirement
|
|
17
|
+
none: false
|
|
18
|
+
requirements:
|
|
19
|
+
- - ~>
|
|
20
|
+
- !ruby/object:Gem::Version
|
|
21
|
+
version: 0.1.0
|
|
22
|
+
type: :runtime
|
|
23
|
+
prerelease: false
|
|
24
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
25
|
+
none: false
|
|
26
|
+
requirements:
|
|
27
|
+
- - ~>
|
|
28
|
+
- !ruby/object:Gem::Version
|
|
29
|
+
version: 0.1.0
|
|
30
|
+
- !ruby/object:Gem::Dependency
|
|
31
|
+
name: rspec
|
|
32
|
+
requirement: !ruby/object:Gem::Requirement
|
|
33
|
+
none: false
|
|
34
|
+
requirements:
|
|
35
|
+
- - ~>
|
|
36
|
+
- !ruby/object:Gem::Version
|
|
37
|
+
version: 2.8.0
|
|
38
|
+
type: :development
|
|
39
|
+
prerelease: false
|
|
40
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
41
|
+
none: false
|
|
42
|
+
requirements:
|
|
43
|
+
- - ~>
|
|
44
|
+
- !ruby/object:Gem::Version
|
|
45
|
+
version: 2.8.0
|
|
46
|
+
- !ruby/object:Gem::Dependency
|
|
47
|
+
name: rdoc
|
|
48
|
+
requirement: !ruby/object:Gem::Requirement
|
|
49
|
+
none: false
|
|
50
|
+
requirements:
|
|
51
|
+
- - ~>
|
|
52
|
+
- !ruby/object:Gem::Version
|
|
53
|
+
version: '3.12'
|
|
54
|
+
type: :development
|
|
55
|
+
prerelease: false
|
|
56
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
57
|
+
none: false
|
|
58
|
+
requirements:
|
|
59
|
+
- - ~>
|
|
60
|
+
- !ruby/object:Gem::Version
|
|
61
|
+
version: '3.12'
|
|
62
|
+
- !ruby/object:Gem::Dependency
|
|
63
|
+
name: jeweler
|
|
64
|
+
requirement: !ruby/object:Gem::Requirement
|
|
65
|
+
none: false
|
|
66
|
+
requirements:
|
|
67
|
+
- - ~>
|
|
68
|
+
- !ruby/object:Gem::Version
|
|
69
|
+
version: 1.8.4
|
|
70
|
+
type: :development
|
|
71
|
+
prerelease: false
|
|
72
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
73
|
+
none: false
|
|
74
|
+
requirements:
|
|
75
|
+
- - ~>
|
|
76
|
+
- !ruby/object:Gem::Version
|
|
77
|
+
version: 1.8.4
|
|
78
|
+
description: Reads mascot dat files with gusto for mspire library.
|
|
79
|
+
email: jtprince@gmail.com
|
|
80
|
+
executables: []
|
|
81
|
+
extensions: []
|
|
82
|
+
extra_rdoc_files:
|
|
83
|
+
- LICENSE.txt
|
|
84
|
+
- README.md
|
|
85
|
+
files:
|
|
86
|
+
- .document
|
|
87
|
+
- .rspec
|
|
88
|
+
- LICENSE.txt
|
|
89
|
+
- README.md
|
|
90
|
+
- Rakefile
|
|
91
|
+
- VERSION
|
|
92
|
+
- lib/mspire/mascot/dat.rb
|
|
93
|
+
- lib/mspire/mascot/dat/index.rb
|
|
94
|
+
- lib/mspire/mascot/dat/peptide.rb
|
|
95
|
+
- lib/mspire/mascot/dat/query.rb
|
|
96
|
+
- mspire-mascot-dat.gemspec
|
|
97
|
+
- spec/mspire/mascot/dat/index_spec.rb
|
|
98
|
+
- spec/mspire/mascot/dat/peptide_spec.rb
|
|
99
|
+
- spec/mspire/mascot/dat/query_spec.rb
|
|
100
|
+
- spec/mspire/mascot/dat_spec.rb
|
|
101
|
+
- spec/reference/dat_format_reference.md
|
|
102
|
+
- spec/reference/two_spectra_decoy_F004129.png
|
|
103
|
+
- spec/reference/two_spectra_no_decoy_F004128.png
|
|
104
|
+
- spec/spec_helper.rb
|
|
105
|
+
- spec/testfiles/F004128.dat
|
|
106
|
+
- spec/testfiles/F004129.dat
|
|
107
|
+
- spec/testfiles/two_spectra.mgf
|
|
108
|
+
homepage: http://github.com/princelab/mspire-mascot-dat
|
|
109
|
+
licenses:
|
|
110
|
+
- MIT
|
|
111
|
+
post_install_message:
|
|
112
|
+
rdoc_options: []
|
|
113
|
+
require_paths:
|
|
114
|
+
- lib
|
|
115
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
116
|
+
none: false
|
|
117
|
+
requirements:
|
|
118
|
+
- - ! '>='
|
|
119
|
+
- !ruby/object:Gem::Version
|
|
120
|
+
version: '0'
|
|
121
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
122
|
+
none: false
|
|
123
|
+
requirements:
|
|
124
|
+
- - ! '>='
|
|
125
|
+
- !ruby/object:Gem::Version
|
|
126
|
+
version: '0'
|
|
127
|
+
requirements: []
|
|
128
|
+
rubyforge_project:
|
|
129
|
+
rubygems_version: 1.8.23
|
|
130
|
+
signing_key:
|
|
131
|
+
specification_version: 3
|
|
132
|
+
summary: Reads mascot dat files for mspire library.
|
|
133
|
+
test_files: []
|