msf 0.1.0

data/erd/schema.txt

@@ -0,0 +1,666 @@
+CREATE TABLE [AminoAcidModifications] (
+	[AminoAcidModificationID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[ModificationName] [varchar] (250) COLLATE NOCASE NOT NULL ,
+	[DeltaMass] [double] NULL ,
+	[Substitution] [varchar] (50) COLLATE NOCASE NULL ,
+	[LeavingGroup] [varchar] (50) COLLATE NOCASE NULL ,	
+	[Abbreviation] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[PositionType] [int] NOT NULL ,
+	[IsActive] [bit] NULL ,
+	[DeltaAverageMass] [double] NULL, 
+	[UnimodAccession] [long] NULL, 
+	[IsSubstitution] [bool] DEFAULT 0 NOT NULL, 
+	UNIQUE (
+		[ModificationName],
+		[PositionType]
+	),
+	UNIQUE (
+		[Abbreviation],
+		[PositionType]
+	)
+);
+CREATE TABLE [AminoAcidModificationsAminoAcids] (
+	[AminoAcidModificationID] [int] NOT NULL ,
+	[AminoAcidID] [int] NOT NULL ,	
+	[Classification][int] NOT NULL,
+	PRIMARY KEY ( [AminoAcidModificationID],[AminoAcidID] )
+);
+CREATE TABLE [AminoAcidModificationsAminoAcidsNL] (
+	[AminoAcidModificationID] [int] NOT NULL ,
+	[AminoAcidID] [int] NOT NULL ,	
+	[NeutralLossID] [int] NOT NULL ,	
+	PRIMARY KEY ( [AminoAcidModificationID],[AminoAcidID], [NeutralLossID] )
+);
+CREATE TABLE [AminoAcidModificationsNeutralLosses](
+	[NeutralLossID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[Name] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[MonoisotopicMass] [double] NOT NULL ,
+	[AverageMass] [double] NOT NULL 
+);
+CREATE TABLE [AminoAcids] (
+	[AminoAcidID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[AminoAcidName] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[OneLetterCode] [char] (1) NULL ,
+	[ThreeLetterCode] [char] (3) COLLATE NOCASE UNIQUE NULL ,
+	[MonoisotopicMass] [double] NOT NULL ,
+	[AverageMass] [double] NOT NULL ,
+	[SumFormula] [varchar] (50) COLLATE NOCASE NULL
+);
+CREATE TABLE AnnotationDataVersion(
+	[PcDataVersion] INTEGER PRIMARY KEY NOT NULL,
+	[PcDataRelease] [bigint] NOT NULL 
+);
+CREATE TABLE AnnotationDataset(
+	[DatasetId] INTEGER PRIMARY KEY NOT NULL ,
+	[Name] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[DisplayName]  [varchar] (30) COLLATE NOCASE NOT NULL ,
+	[Guid] [varchar] (50) COLLATE NOCASE NOT NULL,
+	[Description] [text]
+);
+CREATE TABLE AnnotationGroups(
+	[AnnotationGroupId] [int] NOT NULL,
+	[Description] [text],
+	[DatasetId] [int] NOT NULL,
+	[Position][int] NOT NULL,
+	[ColorR][int] NOT NULL,
+	[ColorG][int] NOT NULL,
+	[ColorB][int] NOT NULL,
+	[GroupDefinition][Blob],
+	PRIMARY KEY (		
+		[AnnotationGroupId],
+		[DatasetId] 
+	)
+);
+CREATE TABLE AnnotationTypes(
+	[AnnotationTypeId] INTEGER PRIMARY KEY NOT NULL ,
+	[Name] [varchar] (30) COLLATE NOCASE NOT NULL ,
+	[Description] [text]
+);
+CREATE TABLE Annotations(
+	[AnnotationId] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[Accession] [varchar] (30) COLLATE NOCASE NOT NULL ,
+	[Description] [text],
+	[type] [int]
+);
+CREATE TABLE AnnotationsAnnotationGroups(
+	[AnnotationId]  [int] NOT NULL,
+	[AnnotationGroupId] [int] NOT NULL,
+	PRIMARY KEY (		
+		[AnnotationId],
+		[AnnotationGroupId] 
+	)
+);
+CREATE TABLE AnnotationsProtein(
+	[proteinID] [int] NOT NULL ,
+	[AnnotationId] [int] NOT NULL,
+	[Evidence] [int],
+	[PositionBegin][int],
+	[PositionEnd][int],
+	[ProteinAccession]  [varchar] (30) COLLATE NOCASE NOT NULL,
+	PRIMARY KEY (		
+		[proteinID],
+		[AnnotationId],
+		[Evidence],
+		[PositionBegin],
+		[ProteinAccession]
+	)
+);
+CREATE TABLE Chromatograms (	
+	[FileID] [int] NOT NULL,
+	[TraceType] [int] NOT NULL,
+	[Chromatogram] [binary] NOT NULL,
+	PRIMARY KEY (		
+		[FileID],
+		[TraceType] 
+	)
+);
+CREATE TABLE CustomDataFields (	
+	[FieldID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[Guid] [varchar] (50) COLLATE NOCASE NOT NULL,
+	[DisplayName][varchar](50) COLLATE NOCASE NOT NULL,
+	[SourceNodeNumber] [int] NOT NULL,
+	[TargetNodeNumber] [int] NOT NULL,
+	[DataType][int] NOT NULL,
+	[DataTarget][int] NOT NULL,
+	[Version][double] NOT NULL,
+	[AccessMode][int] DEFAULT 0,
+	[Visibility][int] DEFAULT 0,
+	[GroupVisibility][int] DEFAULT 0,
+	[Format][varchar](20),
+	[PlotType][int] NOT NULL,
+	[DataPurpose][varchar](250)
+);
+CREATE TABLE CustomDataPeptides (
+	[FieldID] [int] NOT NULL,
+	[PeptideID] [int] NOT NULL,
+	[FieldValue] [variant],
+	PRIMARY KEY (		
+		[FieldID],
+		[PeptideID] 
+	)
+);
+CREATE TABLE CustomDataPeptides_decoy (
+	[FieldID] [int] NOT NULL,
+	[PeptideID] [int] NOT NULL,
+	[FieldValue] [variant],
+	PRIMARY KEY (		
+		[FieldID],
+		[PeptideID] 
+	)
+);
+CREATE TABLE CustomDataProcessingNodes (
+	[FieldID] [int] NOT NULL,
+	[ProcessingNodeNumber] [int] NOT NULL,
+	[FieldValue] [variant],
+	PRIMARY KEY (		
+		[FieldID],
+		[ProcessingNodeNumber] 
+	)
+);
+CREATE TABLE CustomDataProteins (
+	[FieldID] [int] NOT NULL,
+	[ProteinID] [int] NOT NULL,
+	[FieldValue] [variant],
+	PRIMARY KEY (		
+		[FieldID],
+		[ProteinID] 
+	)
+);
+CREATE TABLE CustomDataProteins_decoy (
+	[FieldID] [int] NOT NULL,
+	[ProteinID] [int] NOT NULL,
+	[FieldValue] [variant],
+	PRIMARY KEY (		
+		[FieldID],
+		[ProteinID] 
+	)
+);
+CREATE TABLE CustomDataSpectra (
+	[FieldID] [int] NOT NULL,
+	[SpectrumID] [int] NOT NULL,
+	[FieldValue] [variant],
+	PRIMARY KEY (		
+		[FieldID],
+		[SpectrumID] 
+	)
+);
+CREATE TABLE [Enzymes] (
+	[EnzymeID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[Name] [varchar] (25) UNIQUE COLLATE NOCASE NOT NULL ,
+	[Abbreviation] [varchar] (5) COLLATE NOCASE NOT NULL ,
+	[Seperator] [varchar] (10) COLLATE NOCASE NOT NULL ,
+	[NonSeperator] [varchar] (10) COLLATE NOCASE NOT NULL ,
+	[Offset] [int] NOT NULL
+);
+CREATE TABLE [EnzymesCleavageSpecificities] (
+	[EnzymeID] [int] NOT NULL ,
+	[Specificity] [int] NOT NULL ,
+    PRIMARY KEY (EnzymeID, Specificity)
+);
+CREATE TABLE [EventAnnotations] (
+	[EventID] INTEGER PRIMARY KEY NOT NULL,
+	[Charge] [smallint] NOT NULL,									 
+	[IsotopePatternID] [int] NOT NULL,
+	[QuanResultID] [int] NOT NULL,
+	[QuanChannelID] [int] NOT NULL
+);
+CREATE TABLE [EventAreaAnnotations] (
+	[EventID] INTEGER PRIMARY KEY NOT NULL,
+	[Charge] [smallint] NOT NULL,									 
+	[IsotopePatternID] [int] NOT NULL,
+	[QuanResultID] [int] NOT NULL
+);
+CREATE TABLE [Events] (
+	[EventID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
+	[Mass] [double] NOT NULL,									 
+	[MassAvg] [double] NOT NULL,
+	[Area] [float] NOT NULL,
+	[Intensity] [float] NOT NULL,
+	[PeakWidth] [float] NOT NULL,	
+	[RT] [double] NOT NULL,
+	[LeftRT] [float] NOT NULL,
+	[RightRT] [float] NOT NULL,
+	[SN][float] DEFAULT 0.0 NOT NULL,
+	[FileID] [int] NOT NULL
+);
+CREATE TABLE [FastaFiles] (
+	[FastaFileID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[FileName] [varchar] (256) UNIQUE COLLATE NOCASE NOT NULL ,
+	[State] [int] NOT NULL ,
+	[VirtualFileName] [varchar] (256) COLLATE NOCASE NOT NULL ,
+	[FileSize] [bigint] NOT NULL ,
+	[FileTime] [bigint] NOT NULL ,
+	[NumberOfProteins] [bigint] NULL ,
+	[NumberOfAminoAcids] [bigint] NULL ,
+	[FileHashCode] [bigint] NULL ,
+	[Hidden] [bit] NOT NULL ,
+	[IsSrfImport] [bit] NOT NULL ,
+	[IsScheduledForDeletion] [bit] DEFAULT 0 NOT NULL 
+);
+CREATE TABLE [FastaFilesProteinAnnotations] (
+	[FastaFileID] [int] NOT NULL ,
+	[ProteinAnnotationID] [int] NOT NULL ,
+	PRIMARY KEY (
+		[FastaFileID],
+		[ProteinAnnotationID]	
+	)
+);
+CREATE TABLE [FileInfos] (	
+	[FileID] [int] PRIMARY KEY NOT NULL ,
+	[FileName] [varchar] (2048) COLLATE NOCASE NOT NULL ,	
+	[FileTime] [datetime] NOT NULL ,
+	[FileSize] [bigint] NOT NULL ,
+	[PhysicalFileName] [varchar] (2048) COLLATE NOCASE NOT NULL ,
+	[FileType] [smallint] NOT NULL 
+);
+CREATE TABLE [MassPeakRelations] (	
+	[MassPeakID] [int] NOT NULL,
+	[RelatedMassPeakID] [int] NOT NULL,
+	PRIMARY KEY (		
+		[MassPeakID],
+		[RelatedMassPeakID] 
+	)
+);
+CREATE TABLE [MassPeaks] (	
+	[MassPeakID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
+	[Charge] [smallint] NULL ,
+	[Intensity] [double] NULL ,
+	[Mass] [double] NULL ,
+	[ScanNumbers] [varchar](1000) NULL,
+	[FileID] [int] NULL,
+	[PercentIsolationInterference] [float] NULL,
+	[IonInjectTime] [int] NULL,
+	UNIQUE(
+		[Charge], 
+		[Mass], 
+		[ScanNumbers], 
+		[FileID]
+	)
+);
+CREATE TABLE [PeptideScores] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[ScoreID] [int] NOT NULL ,
+	[ProcessingNodeID] [int] NULL ,
+	[ScoreValue] [double] NOT NULL ,	
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[ScoreID]
+	)
+);
+CREATE TABLE [PeptideScores_decoy] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[ScoreID] [int] NOT NULL ,
+	[ProcessingNodeID] [int] NULL ,
+	[ScoreValue] [double] NOT NULL,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[ScoreID]
+	)
+);
+CREATE TABLE [Peptides] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[SpectrumID] [int] NOT NULL ,
+	[TotalIonsCount] [smallint] NOT NULL ,
+	[MatchedIonsCount] [smallint] NOT NULL ,
+	[ConfidenceLevel] [smallint] NOT NULL ,
+	[SearchEngineRank] [int] NOT NULL,
+	[Hidden] [bit] DEFAULT 0 NOT NULL ,
+	[Sequence] [varchar] (1024) COLLATE NOCASE NULL,	
+	[Annotation] [varchar] (1024) COLLATE NOCASE NULL ,
+	[UniquePeptideSequenceID] [int] DEFAULT 1 NOT NULL,
+	[MissedCleavages] [smallint] NOT NULL,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID] 
+	)
+);
+CREATE TABLE [PeptidesAminoAcidModifications] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[AminoAcidModificationID] [int] NOT NULL ,
+	[Position] [int] NOT NULL ,
+	PRIMARY KEY ( 		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[AminoAcidModificationID],
+		[Position]
+	)
+);
+CREATE TABLE [PeptidesAminoAcidModifications_decoy] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[AminoAcidModificationID] [int] NOT NULL ,
+	[Position] [int] NOT NULL,
+	PRIMARY KEY ( 		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[AminoAcidModificationID],
+		[Position]
+	)
+);
+CREATE TABLE [PeptidesProteins] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[ProteinID] [int] NOT NULL ,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[ProteinID]
+	)
+);
+CREATE TABLE [PeptidesProteins_decoy] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[ProteinID] [int] NOT NULL ,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[ProteinID]
+	)
+);
+CREATE TABLE [PeptidesTerminalModifications] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[TerminalModificationID] [int] NOT NULL ,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[TerminalModificationID]
+	)
+);
+CREATE TABLE [PeptidesTerminalModifications_decoy] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[TerminalModificationID] [int] NOT NULL ,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID],
+		[TerminalModificationID]
+	)
+);
+CREATE TABLE [Peptides_decoy] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[PeptideID] [int] NOT NULL ,
+	[SpectrumID] [int] NOT NULL ,
+	[TotalIonsCount] [smallint] NOT NULL ,
+	[MatchedIonsCount] [smallint] NOT NULL ,
+	[ConfidenceLevel] [smallint] NOT NULL ,
+	[SearchEngineRank] [int] NOT NULL,
+	[Sequence] [varchar] (1024) COLLATE NOCASE NULL,	
+	[Annotation] [varchar] (1024) COLLATE NOCASE NULL ,
+	[UniquePeptideSequenceID] int DEFAULT 1 NOT NULL,
+	[MissedCleavages] [smallint] NOT NULL,
+	PRIMARY KEY (		
+		[ProcessingNodeNumber],
+		[PeptideID] 
+	)
+);
+CREATE TABLE [PrecursorIonAreaSearchSpectra] (
+	[QuanResultID] [int] NOT NULL ,
+	[SearchSpectrumID] [int] NULL 
+);
+CREATE TABLE [PrecursorIonQuanResults] (
+	[QuanChannelID][int] NOT NULL,
+	[QuanResultID][int] NOT NULL,
+	[Mass] [double] NOT NULL ,
+	[Charge] [int] NOT NULL ,
+	[Area] [double] NULL ,
+	[RetentionTime] [double] NULL
+);
+CREATE TABLE [PrecursorIonQuanResultsSearchSpectra] (
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[QuanResultID] [int] NOT NULL ,
+	[SearchSpectrumID] [int] NULL 
+);
+CREATE TABLE [ProcessingNodeConnectionPoints] (
+	[ProcessingNodeID] INTEGER NOT NULL,
+	[Interface] [varchar] (256) NOT NULL,
+	[ConnectionDirection] [int] NOT NULL, 
+	[ConnectionMode] [int] NOT NULL, 
+	[ConnectionMultiplicity] [int] NOT NULL, 
+	[ConnectionRequirement] [int] NOT NULL,
+	[DataTypeSpecialization] [varchar] (256) NOT NULL, 
+	[ConnectionDisplayName] [varchar] (256) NOT NULL
+);
+CREATE TABLE ProcessingNodeExtensions(
+	[ExtensionID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
+	[ProcessingNodeNumber] [int] NOT NULL,
+	[Guid] [varchar] (36) COLLATE NOCASE NOT NULL,
+	[Purpose] [varchar](256) COLLATE NOCASE NOT NULL,
+	[PurposeDetail] [varchar](256) COLLATE NOCASE NULL,
+	[MajorVersion] [int] NOT NULL,
+	[MinorVersion] [int] NOT NULL,
+	[Settings] [text]
+);
+CREATE TABLE [ProcessingNodeFilterParameters] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[FilterParameterName] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[FilterModuleTypeID] [int] NOT NULL ,
+	[FilterModuleNumber] [int] NOT NULL ,			
+	[ProcessingNodeID] [int] NOT NULL ,
+	[FilterParameterValue] [double] NOT NULL ,
+	PRIMARY KEY ( [ProcessingNodeNumber], [FilterParameterName])
+);
+CREATE TABLE [ProcessingNodeInterfaces] (
+	[ProcessingNodeID] INTEGER NOT NULL,
+	[InterfaceKind] [int] NOT NULL,
+	[InterfaceName] [varchar] (256) NOT NULL
+);
+CREATE TABLE [ProcessingNodeParameters] (	
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[ParameterName] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[FriendlyName] [varchar](256) COLLATE NOCASE NOT NULL,	
+	[ProcessingNodeID] [int] NOT NULL , 
+	[IntendedPurpose] [int] NOT NULL, 
+	[PurposeDetails] [varchar] (1024) COLLATE NOCASE NOT NULL, 
+	[Hidden] [bit] NOT NULL, 
+	[Advanced] [bit] NOT NULL, 
+	[Category] [varchar] (50)  COLLATE NOCASE NOT NULL, 
+	[Position] [int] NOT NULL, 
+	[ParameterValue] [varchar] (50) COLLATE NOCASE NOT NULL ,
+	[ValueDisplayString] [varchar] (1024) COLLATE NOCASE NOT NULL,
+	PRIMARY KEY ( [ProcessingNodeNumber], [ParameterName] )
+);
+CREATE TABLE [ProcessingNodeScores] (
+	[ProcessingNodeID] [int] NOT NULL ,
+	[ScoreID] INTEGER PRIMARY KEY AUTOINCREMENT ,
+	[ScoreName] [varchar] (50) COLLATE NOCASE NOT NULL ,		
+	[FriendlyName] [varchar](256) COLLATE NOCASE NOT NULL,
+	[Description] [varchar](1024) COLLATE NOCASE NOT NULL,
+	[FormatString] [varchar](64) COLLATE NOCASE NOT NULL,
+	[ScoreCategory] [int] NOT NULL,
+	[Hidden] [bit] NOT NULL,
+	[IsMainScore] [bit] NOT NULL,
+	[ScoreGUID] [varchar] (36) COLLATE NOCASE NOT NULL,	
+	UNIQUE ([ProcessingNodeID], [ScoreName])
+);
+CREATE TABLE [ProcessingNodes] (	
+	[ProcessingNodeNumber] [int] PRIMARY KEY NOT NULL ,
+	[ProcessingNodeID] [int] NOT NULL ,
+	[ProcessingNodeParentNumber] [varchar] (36) COLLATE NOCASE NOT NULL ,
+	[NodeName] [varchar] (128) COLLATE NOCASE NULL ,
+	[FriendlyName] [varchar](256) COLLATE NOCASE NOT NULL,
+	[MajorVersion] [int] NOT NULL ,
+	[MinorVersion] [int] NOT NULL ,
+	[NodeComment] [varchar] (256) COLLATE NOCASE NULL ,
+	[NodeGUID] [varchar] (36) COLLATE NOCASE NOT NULL,
+	[ProcessingNodeState] [int] DEFAULT 0 NOT NULL  
+);
+CREATE TABLE ProcessingNodesSpectra (	
+	[SendingProcessingNodeNumber] [int] NOT NULL,
+	[SpectrumID] [int] NOT NULL,
+	PRIMARY KEY (		
+		[SendingProcessingNodeNumber],
+		[SpectrumID] 
+	)
+);
+CREATE TABLE [ProteinAnnotations] (
+	[ProteinAnnotationID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[ProteinID] [int] NOT NULL ,
+	[DescriptionHashCode] [bigint] NOT NULL ,
+	[Description] [text] NOT NULL,
+	[TaxonomyID] [int] NOT NULL
+);
+CREATE TABLE [ProteinIdentificationGroups] (
+	[ProteinIdentificationGroupId] [int] NOT NULL,
+	[ProcessingNodeNumber] [int] NOT NULL,	
+	PRIMARY KEY (
+		[ProteinIdentificationGroupId],
+		[ProcessingNodeNumber] 		
+	)
+);
+CREATE TABLE [ProteinScores] (	
+	[ProcessingNodeNumber] [int] NOT NULL,
+	[ProteinID] [int] NOT NULL ,
+	[ProteinIdentificationGroupID] [int] NOT NULL ,
+	[ProteinScore] [double] NOT NULL ,
+	[Coverage] [double] DEFAULT 0 NOT NULL ,
+	PRIMARY KEY ( 		
+		[ProcessingNodeNumber],
+		[ProteinID]
+	)
+);
+CREATE TABLE [ProteinScores_decoy] (	
+	[ProcessingNodeNumber] [int] NOT NULL,
+	[ProteinID] [int] NOT NULL ,
+	[ProteinIdentificationGroupID] [int] NOT NULL ,
+	[ProteinScore] [double] NOT NULL ,
+	[Coverage] [double] DEFAULT 0 NOT NULL ,
+	PRIMARY KEY ( 		
+		[ProcessingNodeNumber],
+		[ProteinID]
+	)
+);
+CREATE TABLE [Proteins] (
+	[ProteinID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[Sequence] [text] NOT NULL ,
+	[SequenceHashCode] [bigint] NOT NULL
+, [IsMasterProtein] [bit] DEFAULT 0 NOT NULL);
+CREATE TABLE [ProteinsProteinGroups](
+	[ProteinID] [int] NOT NULL,
+	[ProteinGroupID] [int] NOT NULL
+);
+CREATE TABLE PtmAnnotationData(
+	[ProteinId] INTEGER NOT NULL,
+	[PtmUnimodId] INTEGER NOT NULL,	
+	[Position] INTEGER NOT NULL,
+PRIMARY KEY (
+		[ProteinId],
+		[PtmUnimodId],
+		[Position]
+	)
+);
+CREATE TABLE [ReporterIonQuanResults] (
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[QuanChannelID] [int] NOT NULL ,	
+	[SpectrumID] [int] NOT NULL ,
+	[Mass] [double] NOT NULL ,
+	[Height] [double] NULL ,
+	PRIMARY KEY (
+		[ProcessingNodeNumber],
+		[QuanChannelID],		
+		[SpectrumID]
+	)
+);
+CREATE TABLE [ReporterIonQuanResultsSearchSpectra] (
+	[ProcessingNodeNumber] [int] NOT NULL ,
+	[SpectrumID] [int] NOT NULL ,
+	[SearchSpectrumID] [int] NULL 
+);
+CREATE TABLE [ScanEvents] (
+	[ScanEventID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[MSLevel] [tinyint] NOT NULL ,
+	[Polarity] [tinyint] NOT NULL ,
+	[ScanType] [tinyint] NOT NULL ,
+	[Ionization] [tinyint] NOT NULL ,
+	[MassAnalyzer] [tinyint] NOT NULL ,
+	[ActivationType] [tinyint] NOT NULL ,
+	UNIQUE (
+		[MSLevel],
+		[Polarity],
+		[ScanType],
+		[Ionization],
+		[MassAnalyzer],		
+		[ActivationType]
+	)
+);
+CREATE TABLE [SchemaInfo] (
+    [Version] [int] PRIMARY KEY NOT NULL,
+	[Kind] [varchar] (32) NOT NULL,	
+	[Date] [datetime] NOT NULL,
+	[SoftwareVersion] [varchar] (64) NOT NULL,
+	[Comment] [text] NOT NULL
+);
+CREATE TABLE Spectra (	
+	[UniqueSpectrumID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL ,
+	[Spectrum] [binary] NOT NULL,
+	[SpectrumHashCode] [bigint] NULL
+);
+CREATE TABLE [SpectrumHeaders] (	
+	[SpectrumID] [INTEGER] PRIMARY KEY NOT NULL ,
+	[MassPeakID] [int] NULL ,
+	[ScanEventID] [int] NULL ,
+	[LastScan] [int] NULL ,
+	[FirstScan] [int] NULL ,
+	[RetentionTime] [double] NULL ,
+	[Hidden] [bit] DEFAULT 0 NOT NULL ,	
+	[ScanNumbers] [varchar](1000) NULL ,
+	[Charge] [smallint] NULL ,
+	[Mass] [double] NULL,
+	[CreatingProcessingNodeNumber] [int] NOT NULL,	
+	[UniqueSpectrumID] [int] DEFAULT 0 NOT NULL
+);
+CREATE TABLE SpectrumScores (	
+	[ProcessingNodeNumber] [int] NOT NULL,
+	[SpectrumID] [int] NOT NULL,
+	[Score] [double] NOT NULL,
+	PRIMARY KEY (		
+		[SpectrumID],
+		[ProcessingNodeNumber]
+	)
+);
+CREATE TABLE [TaxonomyNames] (  
+	[TaxonomyID] INTEGER NOT NULL ,
+	[Name] [varchar](1024) COLLATE NOCASE NULL ,
+	[NameCategory] INTEGER NOT NULL ,	
+	UNIQUE (
+		TaxonomyID,
+		Name,
+		NameCategory
+	)
+);
+CREATE TABLE [TaxonomyNodes] (
+	[TaxonomyID] INTEGER PRIMARY KEY NOT NULL ,
+	[ParentTaxonomyID] INTEGER NOT NULL ,
+	[TaxonomyRank] INTEGER NOT NULL ,
+	[LeftNodeIndex] INTEGER NOT NULL ,
+	[RightNodeIndex] INTEGER NOT NULL,
+	UNIQUE (TaxonomyID)
+);
+CREATE TABLE [WorkflowInfo] (
+	[WorkflowName] [varchar] (256) COLLATE NOCASE NOT NULL ,
+	[WorkflowDescription] [varchar] (256) COLLATE NOCASE NOT NULL ,
+	[WorkflowState] [int] DEFAULT 0 NOT NULL ,
+	[WorkflowStartDate] [datetime] NOT NULL ,
+	[WorkflowTemplate] [varchar] (256) NOT NULL ,
+	[User] [varchar] (256) COLLATE NOCASE NOT NULL ,	
+	[WorkflowGUID] [varchar] (36) COLLATE NOCASE NOT NULL ,
+	[MachineGUID] [varchar] (36) COLLATE NOCASE NOT NULL ,
+	[MachineName] [varchar] (256) COLLATE NOCASE NOT NULL,	
+	[MergeSimilarIdentificationResults] [bit] NOT NULL,
+	[IsValid] [bit] NOT NULL,	
+	[Version] [int] NOT NULL	
+);
+CREATE TABLE [WorkflowMessages] (	
+	[MessageID] INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
+	[ProcessingNodeID] [int] NOT NULL ,
+	[ProcessingNodeNumber] [int] NOT NULL ,	
+	[Time] [bigint] NOT NULL ,
+	[MessageKind] [int] NOT NULL ,
+	[Message] [varchar] (1024) COLLATE NOCASE NOT NULL 	
+);