ms-sequest 0.0.18 → 0.0.20

data/VERSION

@@ -1 +1 @@
-0.0.18
+0.0.20

data/lib/ms/sequest/srf/pepxml.rb

@@ -278,12 +278,13 @@ module Ms::Sequest::Srf::Pepxml
 
       text ""
       text "minor options:"
+      opt :pepxml_version, 'schema version number to use', :default => Ms::Ident::Pepxml::DEFAULT_PEPXML_VERSION
       opt :ms_model, 'mass spectrometer model', :type => :string
       opt :ms_ionization, 'type of ms ionization', :default => 'ESI'
       opt :ms_detector, 'ms detector', :default => 'UNKNOWN'
       opt :ms_mass_analyzer, 'ms mass analyzer', :type => :string
       opt :ms_manufacturer, 'ms manufacturer', :default => 'Thermo'
-      opt :raw_data, 'preferred extension for raw data', :default => '.mzXML'
+      opt :raw_data, 'preferred extension for raw data', :default => '.mzML'
       opt :db_seq_type, "'AA' or 'NA'", :default => 'AA'
       opt :db_residue_size, 'calculate the size of the fasta file'
       opt :db_name, 'the database name', :type => :string

data/spec/ms/sequest/srf/pepxml_spec.rb

@@ -64,7 +64,7 @@ describe 'an Ms::Ident::Pepxml object from an srf file with modifications' do
 
     mrs_node = root.child
     mrs_node.name.is 'msms_run_summary'
-    has_attributes( mrs_node, 'msManufacturer="Thermo" msModel="LCQ Deca XP" msIonization="ESI" msMassAnalyzer="Ion Trap" msDetector="UNKNOWN" raw_data=".mzXML"' )
+    has_attributes( mrs_node, 'msManufacturer="Thermo" msModel="LCQ Deca XP" msIonization="ESI" msMassAnalyzer="Ion Trap" msDetector="UNKNOWN" raw_data=".mzML"' )
     se_node = mrs_node.child
     se_node.name.is 'sample_enzyme'
     has_attributes se_node, 'name="Trypsin"'

metadata

@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
   segments: 
   - 0
   - 0
-  - 18
-  version: 0.0.18
+  - 20
+  version: 0.0.20
 platform: ruby
 authors: 
 - John T. Prince
@@ -14,7 +14,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-03-08 00:00:00 -07:00
+date: 2011-03-09 00:00:00 -07:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -232,7 +232,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
-      hash: -2543561928840978627
+      hash: 2449106576710684635
       segments: 
       - 0
       version: "0"