ms-sequest 0.0.18 → 0.0.20
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/VERSION +1 -1
- data/lib/ms/sequest/srf/pepxml.rb +2 -1
- data/spec/ms/sequest/srf/pepxml_spec.rb +1 -1
- metadata +4 -4
data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.0.
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1
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+
0.0.20
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@@ -278,12 +278,13 @@ module Ms::Sequest::Srf::Pepxml
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text ""
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text "minor options:"
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+
opt :pepxml_version, 'schema version number to use', :default => Ms::Ident::Pepxml::DEFAULT_PEPXML_VERSION
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opt :ms_model, 'mass spectrometer model', :type => :string
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opt :ms_ionization, 'type of ms ionization', :default => 'ESI'
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opt :ms_detector, 'ms detector', :default => 'UNKNOWN'
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opt :ms_mass_analyzer, 'ms mass analyzer', :type => :string
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opt :ms_manufacturer, 'ms manufacturer', :default => 'Thermo'
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-
opt :raw_data, 'preferred extension for raw data', :default => '.
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+
opt :raw_data, 'preferred extension for raw data', :default => '.mzML'
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opt :db_seq_type, "'AA' or 'NA'", :default => 'AA'
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opt :db_residue_size, 'calculate the size of the fasta file'
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opt :db_name, 'the database name', :type => :string
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@@ -64,7 +64,7 @@ describe 'an Ms::Ident::Pepxml object from an srf file with modifications' do
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mrs_node = root.child
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mrs_node.name.is 'msms_run_summary'
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-
has_attributes( mrs_node, 'msManufacturer="Thermo" msModel="LCQ Deca XP" msIonization="ESI" msMassAnalyzer="Ion Trap" msDetector="UNKNOWN" raw_data=".
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+
has_attributes( mrs_node, 'msManufacturer="Thermo" msModel="LCQ Deca XP" msIonization="ESI" msMassAnalyzer="Ion Trap" msDetector="UNKNOWN" raw_data=".mzML"' )
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se_node = mrs_node.child
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se_node.name.is 'sample_enzyme'
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has_attributes se_node, 'name="Trypsin"'
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metadata
CHANGED
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@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
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segments:
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- 0
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- 0
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-
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version: 0.0.
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- 20
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version: 0.0.20
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platform: ruby
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authors:
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- John T. Prince
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@@ -14,7 +14,7 @@ autorequire:
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bindir: bin
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cert_chain: []
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date: 2011-03-
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date: 2011-03-09 00:00:00 -07:00
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default_executable:
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dependencies:
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- !ruby/object:Gem::Dependency
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@@ -232,7 +232,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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-
hash:
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hash: 2449106576710684635
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segments:
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- 0
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version: "0"
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