ms-sequest 0.0.14 → 0.0.15

data/History

@@ -1,3 +1,7 @@
+== 0.0.15 / 2010-08-25
+
+* Fixed another bug in the srf_to_sqt.rb commandline when called without an output file
+
 == 0.0.14 / 2010-08-24
 
 * Merged commandline programs into lib heirarchy for testing

data/VERSION

@@ -1 +1 @@
-0.0.14
+0.0.15

data/lib/ms/sequest/srf/search.rb

@@ -128,10 +128,12 @@ module Ms::Sequest::Srf::Search
 
     format = opt[:format]
 
-    raise "if outfiles specified, needs the same number of files as input files" unless argv.size == opt[:outfiles].size
+    if opt[:outfiles] && (opt[:outfiles].size != argv.size)
+      raise "if outfiles specified, needs the same number of files as input files"
+    end
 
     argv.each_with_index do |srf_file,i|
-      base = srf_file.sub(/\.srf$/i, '')
+      base = srf_file.chomp(File.extname(srf_file))
       newfile = 
         if opt[:outfiles]
           opt[:outfiles][i]

data/lib/ms/sequest/srf/sqt.rb

@@ -11,12 +11,6 @@ module Ms
       
       module Sqt
 
-        def self.commandline(argv)
-          require 'optparse'
-           
-
-        end
-
         # the out_filename will be the base_name + .sqt unless 'out_filename' is
         # defined
         # :round => round floating point numbers
@@ -204,7 +198,9 @@ module Ms::Sequest::Srf::Sqt
       puts(opts) || exit
     end
 
-    raise "if outfiles specified, outfiles must be same size as number of input files" unless opt[:outfiles].size == argv.size
+    if opt[:outfiles] && (opt[:outfiles].size != argv.size)
+      raise "if outfiles specified, outfiles must be same size as number of input files"
+    end
 
     argv.each_with_index do |srf_file,i|
       outfile = 

metadata

@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
   segments: 
   - 0
   - 0
-  - 14
-  version: 0.0.14
+  - 15
+  version: 0.0.15
 platform: ruby
 authors: 
 - John T. Prince
@@ -14,7 +14,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-08-24 00:00:00 -06:00
+date: 2010-08-25 00:00:00 -06:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency