ms-msrun 0.1.0 → 0.2.0
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- data/.gitignore +3 -0
- data/.gitmodules +3 -0
- data/History +18 -0
- data/{README → README.rdoc} +0 -0
- data/Rakefile +93 -107
- data/VERSION +1 -0
- data/lib/lmat.rb +141 -39
- data/lib/ms/msrun/nokogiri.rb +1 -0
- data/lib/ms/msrun/search_dev_notes.txt +47 -0
- data/spec/lmat_spec.rb +87 -11
- data/spec/metadata/opd1/000.v1.mzXML.yml +3 -0
- data/spec/metadata/opd1/000.v2.1.mzXML.yml +3 -0
- data/spec/metadata/opd1/020.mzData.xml.yml +3 -0
- data/spec/metadata/opd1/020.v2.0.readw.mzXML.yml +3 -0
- data/spec/ms/msrun/hpricot.rb +38 -0
- data/spec/ms/msrun/index_spec.rb +12 -13
- data/spec/ms/msrun/search_spec.rb +5 -4
- data/spec/ms/msrun/sha1_spec.rb +3 -6
- data/spec/ms/msrun/test_parsing_xml_frags/parse_test.rb +25 -0
- data/spec/ms/msrun/test_parsing_xml_frags/test1.xml +5 -0
- data/spec/ms/msrun/test_parsing_xml_frags/test2.xml +6 -0
- data/spec/ms/msrun/test_parsing_xml_frags/test3.xml +4 -0
- data/spec/ms/msrun/test_parsing_xml_frags/test4.xml +11 -0
- data/spec/ms/msrun/test_parsing_xml_frags/test_failures.rb +47 -0
- data/spec/ms/msrun_bm.rb +22 -0
- data/spec/ms/msrun_spec.rb +90 -109
- data/spec/ms/scan_spec.rb +5 -6
- data/spec/ms/spectrum/compare_spec.rb +31 -28
- data/spec/ms/spectrum/filter_spec.rb +15 -13
- data/spec/spec_helper.rb +21 -0
- data/spec/testfiles/lmat/tmp1.lmat +0 -0
- data/spec/testfiles/lmat/tmp1.lmata +44 -0
- data/spec/testfiles/lmat/tmp2.lmata +11 -0
- data/spec/testfiles/opd1/000.v1.mzXML +418 -0
- data/spec/testfiles/opd1/000.v1.mzXML.key.yml +51 -0
- data/spec/testfiles/opd1/000.v2.1.mzXML +382 -0
- data/spec/testfiles/opd1/000.v2.1.mzXML.key.yml +51 -0
- data/spec/testfiles/opd1/020.mzData.xml +683 -0
- data/spec/testfiles/opd1/020.mzData.xml.key.yml +43 -0
- data/spec/testfiles/opd1/020.v2.0.readw.mzXML +382 -0
- data/spec/testfiles/opd1/020.v2.0.readw.mzXML.key.yml +46 -0
- metadata +85 -34
@@ -0,0 +1,43 @@
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---
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header:
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version: '1.05'
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4
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scan_count: 20
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5
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start_time: 0.13002
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6
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end_time: 27.31002
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7
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scan_count:
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8
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0: 20
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9
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1: 5
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10
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2: 15
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11
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start_and_end_mz:
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12
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1: [300.0, 1500.0]
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13
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2: [95.0, 1955]
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14
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scan_num_to_prec_mz:
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15
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0:
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16
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1:
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17
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2: 390.9291992
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18
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3: 1121.944824
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19
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4: 1321.913574
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20
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17:
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21
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18: 308.795959
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22
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19: 444.983337
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23
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20: 361.671875
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scans:
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25
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1:
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26
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num: 1
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27
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ms_level: 1
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28
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time: 0.13002
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precursor: nil
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2:
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31
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num: 2
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ms_level: 2
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33
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time: 1.48998
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34
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precursor:
|
35
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mz: 390.9291992
|
36
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intensity: 8.14409e+006
|
37
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20:
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38
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num: 20
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39
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ms_level: 2
|
40
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time: 27.31002
|
41
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precursor:
|
42
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mz: 361.671875
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43
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intensity: 572148.0
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@@ -0,0 +1,382 @@
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<?xml version="1.0" encoding="ISO-8859-1"?>
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<mzXML
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xmlns="http://sashimi.sourceforge.net/schema_revision/mzXML_2.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/mzXML_2.0 http://sashimi.sourceforge.net/schema_revision/mzXML_2.0/mzXML_idx_2.0.xsd">
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6
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<msRun scanCount="20"
|
7
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startTime="PT0.00216667S"
|
8
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endTime="PT27.31S">
|
9
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<parentFile fileName="file://020.RAW"
|
10
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fileType="RAWData"
|
11
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fileSha1="473e1f375f515c077517ad8a6abc3df605c6fbd0"/>
|
12
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<msInstrument>
|
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<msManufacturer category="msManufacturer" value="ThermoFinnigan"/>
|
14
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<msModel category="msModel" value="LCQ Deca XP"/>
|
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<msIonisation category="msIonisation" value="ESI"/>
|
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<msMassAnalyzer category="msMassAnalyzer" value="Ion Trap"/>
|
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<msDetector category="msDetector" value="EMT"/>
|
18
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<software type="acquisition"
|
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name="Xcalibur"
|
20
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version="1.3 SP 1"/>
|
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</msInstrument>
|
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<dataProcessing centroided="1">
|
23
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<software type="conversion"
|
24
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name="readw.exe"
|
25
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version="1.1"/>
|
26
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</dataProcessing>
|
27
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<scan num="1"
|
28
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msLevel="1"
|
29
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peaksCount="794"
|
30
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polarity="+"
|
31
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scanType="ms"
|
32
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retentionTime="PT0.13S"
|
33
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+
lowMz="300.898"
|
34
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+
highMz="1498.97"
|
35
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+
basePeakMz="390.929"
|
36
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+
basePeakIntensity="8.14409e+006"
|
37
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+
totIonCurrent="1.2102e+008">
|
38
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+
<peaks precision="32"
|
39
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byteOrder="network"
|
40
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pairOrder="m/z-int">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pairOrder="m/z-int">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</peaks>
|
91
|
+
</scan>
|
92
|
+
</scan>
|
93
|
+
<scan num="5"
|
94
|
+
msLevel="1"
|
95
|
+
peaksCount="905"
|
96
|
+
polarity="+"
|
97
|
+
scanType="ms"
|
98
|
+
retentionTime="PT5.38S"
|
99
|
+
lowMz="300.694"
|
100
|
+
highMz="1498.26"
|
101
|
+
basePeakMz="391.016"
|
102
|
+
basePeakIntensity="2.89476e+006"
|
103
|
+
totIonCurrent="9.71363e+007">
|
104
|
+
<peaks precision="32"
|
105
|
+
byteOrder="network"
|
106
|
+
pairOrder="m/z-int">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107
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<scan num="6"
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108
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msLevel="2"
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109
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+
peaksCount="38"
|
110
|
+
polarity="+"
|
111
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+
scanType="Full"
|
112
|
+
retentionTime="PT6.78S"
|
113
|
+
collisionEnergy="0"
|
114
|
+
lowMz="111.548"
|
115
|
+
highMz="408.896"
|
116
|
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basePeakMz="149.04"
|
117
|
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basePeakIntensity="2.15056e+006"
|
118
|
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totIonCurrent="6.71519e+006">
|
119
|
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<precursorMz precursorIntensity="2.89476e+006">391.0162354</precursorMz>
|
120
|
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<peaks precision="32"
|
121
|
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byteOrder="network"
|
122
|
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pairOrder="m/z-int">Qt8YukYylABC4UV0RwVYAELij1pAoAAAQuPxJEcSFgBC8dswRmLoAEMSiJpFongAQxUKLEoDQoBDFfP8RzRcAEMWlc5BEAAAQx6lJEY/BABDJa0AR+PsgEMmw3RJaXHwQyeyHkZtJABDXSg8Ru02AEOAg+JHCwwAQ4EJ9EYVXABDgWPwR578AEOB4NJIVeXAQ4JOGki4qOBDgr14R8bRgEOLC4xIRlMAQ4twYEmnRKBDi+h8SIsR4EOS8Z5GieQAQ5NVvEatfgBDlFS0R+laAEOU4WRHqzSAQ5XqkEajCABDo9f0RfhoAEOlvqhGqPwAQ6t1HEd8/ABDrruWRzKuAEOwxrJGYvwAQ7fQpEeyDYBDuNQuRkV8AEO6i4hGGgQAQ7ydAka43ABDzHKkRyJ8AA==</peaks>
|
123
|
+
</scan>
|
124
|
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<scan num="7"
|
125
|
+
msLevel="2"
|
126
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basePeakMz="897.831"
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byteOrder="network"
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pairOrder="m/z-int">RCaLvkYUZABENdy0RUmAAERHDqhEBoAARF+2ukYx+ABEYHUyRoRCAERhSFBEmmAARGICOETZoABEavdKROfAAERvBXpF7OAARHJNPkW9sABEcwi6RDWAAER8h6pE6+AARID5RERcAAA=</peaks>
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236
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polarity="+"
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collisionEnergy="0"
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totIonCurrent="1.28708e+006">
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<precursorMz precursorIntensity="634998">371.0435181</precursorMz>
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<peaks precision="32"
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253
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byteOrder="network"
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254
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collisionEnergy="0"
|
346
|
+
lowMz="118.003"
|
347
|
+
highMz="560.76"
|
348
|
+
basePeakMz="336.3"
|
349
|
+
basePeakIntensity="41787"
|
350
|
+
totIonCurrent="735642">
|
351
|
+
<precursorMz precursorIntensity="572148">361.671875</precursorMz>
|
352
|
+
<peaks precision="32"
|
353
|
+
byteOrder="network"
|
354
|
+
pairOrder="m/z-int">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</peaks>
|
355
|
+
</scan>
|
356
|
+
</scan>
|
357
|
+
</msRun>
|
358
|
+
<index name="scan">
|
359
|
+
<offset id="1">1147</offset>
|
360
|
+
<offset id="2">10001</offset>
|
361
|
+
<offset id="3">11015</offset>
|
362
|
+
<offset id="4">12226</offset>
|
363
|
+
<offset id="5">13294</offset>
|
364
|
+
<offset id="6">23333</offset>
|
365
|
+
<offset id="7">24242</offset>
|
366
|
+
<offset id="8">25914</offset>
|
367
|
+
<offset id="9">27233</offset>
|
368
|
+
<offset id="10">36652</offset>
|
369
|
+
<offset id="11">37949</offset>
|
370
|
+
<offset id="12">39302</offset>
|
371
|
+
<offset id="13">39937</offset>
|
372
|
+
<offset id="14">50081</offset>
|
373
|
+
<offset id="15">51886</offset>
|
374
|
+
<offset id="16">53297</offset>
|
375
|
+
<offset id="17">54914</offset>
|
376
|
+
<offset id="18">63619</offset>
|
377
|
+
<offset id="19">65435</offset>
|
378
|
+
<offset id="20">66725</offset>
|
379
|
+
</index>
|
380
|
+
<indexOffset>68381</indexOffset>
|
381
|
+
<sha1>56789db4aa8d1eb473e1a533f91a2e98132f5776</sha1>
|
382
|
+
</mzXML>
|
@@ -0,0 +1,46 @@
|
|
1
|
+
header:
|
2
|
+
version: '2.0'
|
3
|
+
scan_count: 20
|
4
|
+
start_time: 0.00216667
|
5
|
+
end_time: 27.31
|
6
|
+
parent_basename: 020.RAW
|
7
|
+
parent_location: 'file:'
|
8
|
+
parent_basename_noext: '020'
|
9
|
+
scan_count:
|
10
|
+
0: 20
|
11
|
+
1: 5
|
12
|
+
2: 15
|
13
|
+
start_and_end_mz:
|
14
|
+
1: [300.0, 1499.0] # no scan makes it to 1500 I guess...
|
15
|
+
2: [95.0, 1955]
|
16
|
+
scan_num_to_prec_mz:
|
17
|
+
0:
|
18
|
+
1:
|
19
|
+
2: 390.9291992
|
20
|
+
3: 1121.944824
|
21
|
+
4: 1321.913574
|
22
|
+
17:
|
23
|
+
18: 308.795959
|
24
|
+
19: 444.983337
|
25
|
+
20: 361.671875
|
26
|
+
scans:
|
27
|
+
1:
|
28
|
+
num: 1
|
29
|
+
ms_level: 1
|
30
|
+
time: 0.13
|
31
|
+
precursor:
|
32
|
+
2:
|
33
|
+
num: 2
|
34
|
+
ms_level: 2
|
35
|
+
time: 1.49
|
36
|
+
precursor:
|
37
|
+
mz: 390.9291992
|
38
|
+
intensity: 8.14409e+006
|
39
|
+
20:
|
40
|
+
num: 20
|
41
|
+
ms_level: 2
|
42
|
+
time: 27.31
|
43
|
+
precursor:
|
44
|
+
mz: 361.671875
|
45
|
+
intensity: 572148.0
|
46
|
+
|