ms-in_silico 0.4.1 → 0.4.2

data/Rakefile

@@ -2,7 +2,7 @@ require 'rake'
 require 'jeweler'
 require 'rake/testtask'
 require 'rake/rdoctask'
-require 'rcov/rcovtask'
+#require 'rcov/rcovtask'
 
 Jeweler::Tasks.new do |gem|
   gem.name = "ms-in_silico"
@@ -12,10 +12,9 @@ Jeweler::Tasks.new do |gem|
   gem.homepage = "http://github.com/jtprince/ms-in_silico"
   gem.authors = ["Simon Chiang"]
   gem.rubyforge_project = "mspire"
-  gem.add_dependency("molecules", ">= 0.2.0")
-  gem.add_dependency("tap", ">= 0.17.0")
-  gem.add_development_dependency("tap-test", ">= 0.1.0")
+  gem.add_runtime_dependency("molecules", ">= 0.2.0")
   gem.add_development_dependency("spec-more", ">= 0")
+  gem.add_development_dependency "jeweler"
 end
 Jeweler::GemcutterTasks.new
 
@@ -25,11 +24,11 @@ Rake::TestTask.new(:spec) do |spec|
   spec.verbose = true
 end
 
-Rcov::RcovTask.new do |spec|
-  spec.libs << 'spec'
-  spec.pattern = 'spec/**/*_spec.rb'
-  spec.verbose = true
-end
+#Rcov::RcovTask.new do |spec|
+#  spec.libs << 'spec'
+#  spec.pattern = 'spec/**/*_spec.rb'
+#  spec.verbose = true
+#end
 
 task :default => :spec
 

data/VERSION

@@ -1 +1 @@
-0.4.1
+0.4.2

metadata

@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
   segments: 
   - 0
   - 4
-  - 1
-  version: 0.4.1
+  - 2
+  version: 0.4.2
 platform: ruby
 authors: 
 - Simon Chiang
@@ -14,8 +14,8 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-11-15 00:00:00 -07:00
-default_executable: digest.rb
+date: 2011-03-30 00:00:00 -06:00
+default_executable: digest_aaseq.rb
 dependencies: 
 - !ruby/object:Gem::Dependency 
   name: molecules
@@ -33,7 +33,7 @@ dependencies:
   type: :runtime
   version_requirements: *id001
 - !ruby/object:Gem::Dependency 
-  name: tap
+  name: spec-more
   prerelease: false
   requirement: &id002 !ruby/object:Gem::Requirement 
     none: false
@@ -42,30 +42,13 @@ dependencies:
       - !ruby/object:Gem::Version 
         segments: 
         - 0
-        - 17
-        - 0
-        version: 0.17.0
-  type: :runtime
+        version: "0"
+  type: :development
   version_requirements: *id002
 - !ruby/object:Gem::Dependency 
-  name: tap-test
+  name: jeweler
   prerelease: false
   requirement: &id003 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        segments: 
-        - 0
-        - 1
-        - 0
-        version: 0.1.0
-  type: :development
-  version_requirements: *id003
-- !ruby/object:Gem::Dependency 
-  name: spec-more
-  prerelease: false
-  requirement: &id004 !ruby/object:Gem::Requirement 
     none: false
     requirements: 
     - - ">="
@@ -74,24 +57,23 @@ dependencies:
         - 0
         version: "0"
   type: :development
-  version_requirements: *id004
+  version_requirements: *id003
 description: peptide fragmentation and protein digestion
 email: jtprince@gmail.com
 executables: 
-- digest.rb
+- digest_aaseq.rb
 extensions: []
 
 extra_rdoc_files: 
 - LICENSE
 - README.rdoc
 files: 
-- .gitignore
 - History
 - LICENSE
 - README.rdoc
 - Rakefile
 - VERSION
-- bin/digest.rb
+- bin/digest_aaseq.rb
 - lib/ms/in_silico.rb
 - lib/ms/in_silico/digester.rb
 - lib/ms/in_silico/fragment.rb
@@ -108,8 +90,8 @@ homepage: http://github.com/jtprince/ms-in_silico
 licenses: []
 
 post_install_message: 
-rdoc_options: 
-- --charset=UTF-8
+rdoc_options: []
+
 require_paths: 
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement 
@@ -136,9 +118,9 @@ signing_key:
 specification_version: 3
 summary: in-silico calculations for mass spec data
 test_files: 
+- spec/ms/in_silico/digester_spec.rb
 - spec/ms/in_silico/fragment_spec.rb
 - spec/ms/in_silico/spectrum_spec.rb
-- spec/ms/in_silico/digester_spec.rb
 - spec/readme_spec.rb
 - spec/spec_helper.rb
 - test/ms/in_silico/digest_test.rb

data/.gitignore

@@ -1,6 +0,0 @@
-.DS_Store
-pkg/
-rdoc/
-backup/
-.*.swp
-*.gemspec