ms-in_silico 0.4.1 → 0.4.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/Rakefile +8 -9
- data/VERSION +1 -1
- data/bin/{digest.rb → digest_aaseq.rb} +0 -0
- metadata +14 -32
- data/.gitignore +0 -6
data/Rakefile
CHANGED
|
@@ -2,7 +2,7 @@ require 'rake'
|
|
|
2
2
|
require 'jeweler'
|
|
3
3
|
require 'rake/testtask'
|
|
4
4
|
require 'rake/rdoctask'
|
|
5
|
-
require 'rcov/rcovtask'
|
|
5
|
+
#require 'rcov/rcovtask'
|
|
6
6
|
|
|
7
7
|
Jeweler::Tasks.new do |gem|
|
|
8
8
|
gem.name = "ms-in_silico"
|
|
@@ -12,10 +12,9 @@ Jeweler::Tasks.new do |gem|
|
|
|
12
12
|
gem.homepage = "http://github.com/jtprince/ms-in_silico"
|
|
13
13
|
gem.authors = ["Simon Chiang"]
|
|
14
14
|
gem.rubyforge_project = "mspire"
|
|
15
|
-
gem.
|
|
16
|
-
gem.add_dependency("tap", ">= 0.17.0")
|
|
17
|
-
gem.add_development_dependency("tap-test", ">= 0.1.0")
|
|
15
|
+
gem.add_runtime_dependency("molecules", ">= 0.2.0")
|
|
18
16
|
gem.add_development_dependency("spec-more", ">= 0")
|
|
17
|
+
gem.add_development_dependency "jeweler"
|
|
19
18
|
end
|
|
20
19
|
Jeweler::GemcutterTasks.new
|
|
21
20
|
|
|
@@ -25,11 +24,11 @@ Rake::TestTask.new(:spec) do |spec|
|
|
|
25
24
|
spec.verbose = true
|
|
26
25
|
end
|
|
27
26
|
|
|
28
|
-
Rcov::RcovTask.new do |spec|
|
|
29
|
-
spec.libs << 'spec'
|
|
30
|
-
spec.pattern = 'spec/**/*_spec.rb'
|
|
31
|
-
spec.verbose = true
|
|
32
|
-
end
|
|
27
|
+
#Rcov::RcovTask.new do |spec|
|
|
28
|
+
# spec.libs << 'spec'
|
|
29
|
+
# spec.pattern = 'spec/**/*_spec.rb'
|
|
30
|
+
# spec.verbose = true
|
|
31
|
+
#end
|
|
33
32
|
|
|
34
33
|
task :default => :spec
|
|
35
34
|
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.4.
|
|
1
|
+
0.4.2
|
|
File without changes
|
metadata
CHANGED
|
@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
|
|
|
5
5
|
segments:
|
|
6
6
|
- 0
|
|
7
7
|
- 4
|
|
8
|
-
-
|
|
9
|
-
version: 0.4.
|
|
8
|
+
- 2
|
|
9
|
+
version: 0.4.2
|
|
10
10
|
platform: ruby
|
|
11
11
|
authors:
|
|
12
12
|
- Simon Chiang
|
|
@@ -14,8 +14,8 @@ autorequire:
|
|
|
14
14
|
bindir: bin
|
|
15
15
|
cert_chain: []
|
|
16
16
|
|
|
17
|
-
date:
|
|
18
|
-
default_executable:
|
|
17
|
+
date: 2011-03-30 00:00:00 -06:00
|
|
18
|
+
default_executable: digest_aaseq.rb
|
|
19
19
|
dependencies:
|
|
20
20
|
- !ruby/object:Gem::Dependency
|
|
21
21
|
name: molecules
|
|
@@ -33,7 +33,7 @@ dependencies:
|
|
|
33
33
|
type: :runtime
|
|
34
34
|
version_requirements: *id001
|
|
35
35
|
- !ruby/object:Gem::Dependency
|
|
36
|
-
name:
|
|
36
|
+
name: spec-more
|
|
37
37
|
prerelease: false
|
|
38
38
|
requirement: &id002 !ruby/object:Gem::Requirement
|
|
39
39
|
none: false
|
|
@@ -42,30 +42,13 @@ dependencies:
|
|
|
42
42
|
- !ruby/object:Gem::Version
|
|
43
43
|
segments:
|
|
44
44
|
- 0
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
version: 0.17.0
|
|
48
|
-
type: :runtime
|
|
45
|
+
version: "0"
|
|
46
|
+
type: :development
|
|
49
47
|
version_requirements: *id002
|
|
50
48
|
- !ruby/object:Gem::Dependency
|
|
51
|
-
name:
|
|
49
|
+
name: jeweler
|
|
52
50
|
prerelease: false
|
|
53
51
|
requirement: &id003 !ruby/object:Gem::Requirement
|
|
54
|
-
none: false
|
|
55
|
-
requirements:
|
|
56
|
-
- - ">="
|
|
57
|
-
- !ruby/object:Gem::Version
|
|
58
|
-
segments:
|
|
59
|
-
- 0
|
|
60
|
-
- 1
|
|
61
|
-
- 0
|
|
62
|
-
version: 0.1.0
|
|
63
|
-
type: :development
|
|
64
|
-
version_requirements: *id003
|
|
65
|
-
- !ruby/object:Gem::Dependency
|
|
66
|
-
name: spec-more
|
|
67
|
-
prerelease: false
|
|
68
|
-
requirement: &id004 !ruby/object:Gem::Requirement
|
|
69
52
|
none: false
|
|
70
53
|
requirements:
|
|
71
54
|
- - ">="
|
|
@@ -74,24 +57,23 @@ dependencies:
|
|
|
74
57
|
- 0
|
|
75
58
|
version: "0"
|
|
76
59
|
type: :development
|
|
77
|
-
version_requirements: *
|
|
60
|
+
version_requirements: *id003
|
|
78
61
|
description: peptide fragmentation and protein digestion
|
|
79
62
|
email: jtprince@gmail.com
|
|
80
63
|
executables:
|
|
81
|
-
-
|
|
64
|
+
- digest_aaseq.rb
|
|
82
65
|
extensions: []
|
|
83
66
|
|
|
84
67
|
extra_rdoc_files:
|
|
85
68
|
- LICENSE
|
|
86
69
|
- README.rdoc
|
|
87
70
|
files:
|
|
88
|
-
- .gitignore
|
|
89
71
|
- History
|
|
90
72
|
- LICENSE
|
|
91
73
|
- README.rdoc
|
|
92
74
|
- Rakefile
|
|
93
75
|
- VERSION
|
|
94
|
-
- bin/
|
|
76
|
+
- bin/digest_aaseq.rb
|
|
95
77
|
- lib/ms/in_silico.rb
|
|
96
78
|
- lib/ms/in_silico/digester.rb
|
|
97
79
|
- lib/ms/in_silico/fragment.rb
|
|
@@ -108,8 +90,8 @@ homepage: http://github.com/jtprince/ms-in_silico
|
|
|
108
90
|
licenses: []
|
|
109
91
|
|
|
110
92
|
post_install_message:
|
|
111
|
-
rdoc_options:
|
|
112
|
-
|
|
93
|
+
rdoc_options: []
|
|
94
|
+
|
|
113
95
|
require_paths:
|
|
114
96
|
- lib
|
|
115
97
|
required_ruby_version: !ruby/object:Gem::Requirement
|
|
@@ -136,9 +118,9 @@ signing_key:
|
|
|
136
118
|
specification_version: 3
|
|
137
119
|
summary: in-silico calculations for mass spec data
|
|
138
120
|
test_files:
|
|
121
|
+
- spec/ms/in_silico/digester_spec.rb
|
|
139
122
|
- spec/ms/in_silico/fragment_spec.rb
|
|
140
123
|
- spec/ms/in_silico/spectrum_spec.rb
|
|
141
|
-
- spec/ms/in_silico/digester_spec.rb
|
|
142
124
|
- spec/readme_spec.rb
|
|
143
125
|
- spec/spec_helper.rb
|
|
144
126
|
- test/ms/in_silico/digest_test.rb
|