moab-versioning 4.4.1 → 4.4.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/moab/deposit_bag_validator.rb +2 -2
- data/lib/moab/exceptions.rb +4 -0
- data/lib/moab/file_group.rb +6 -6
- data/lib/moab/file_group_difference.rb +23 -23
- data/lib/moab/file_group_difference_subset.rb +3 -3
- data/lib/moab/file_instance.rb +1 -1
- data/lib/moab/file_instance_difference.rb +3 -3
- data/lib/moab/file_inventory.rb +9 -9
- data/lib/moab/file_inventory_difference.rb +6 -6
- data/lib/moab/file_manifestation.rb +2 -2
- data/lib/moab/file_signature.rb +5 -5
- data/lib/moab/signature_catalog.rb +10 -10
- data/lib/moab/signature_catalog_entry.rb +4 -4
- data/lib/moab/storage_object.rb +5 -5
- data/lib/moab/storage_object_validator.rb +2 -2
- data/lib/moab/storage_object_version.rb +12 -12
- data/lib/moab/storage_repository.rb +1 -1
- data/lib/moab/storage_services.rb +3 -3
- data/lib/moab/version_metadata.rb +2 -2
- data/lib/moab/version_metadata_entry.rb +4 -4
- data/lib/serializer/manifest.rb +2 -2
- data/lib/serializer/serializable.rb +1 -1
- data/lib/stanford/content_inventory.rb +19 -19
- data/lib/stanford/dor_metadata.rb +3 -2
- data/lib/stanford/storage_repository.rb +2 -2
- metadata +12 -12
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: 4b576c73187205ae4548c6460bac2b68cedab5dc7c3b94a66a5d8ec13729c6ae
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4
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+
data.tar.gz: e714a158d2e1388dec94482c1fa858a2ee29a6eca6e0f9004658446801088476
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SHA512:
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metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: 251925f9e4c45f20f6ae4270fc73adfe9f4645689bda08ebd42c2b707909177ab575e0427c83e321c2ebc039c735f9bc141b29037f28cb65249c25bd9e76d520
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7
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+
data.tar.gz: '053391d53a3a3a46bbfedce8e7a04ea0f28a7f5c43689c2bde3c1901f9303eae7356d507904ec1892d9da61f2d4c9c6e58ed3fec894985e19b9ab85dd5fa65fd'
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@@ -191,7 +191,7 @@ module Moab
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home_dir_pathnames = deposit_bag_pathname.children.reject { |file| file.basename.to_s.start_with?(TAGMANIFEST) }
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hash_with_full_pathnames = generate_checksums_hash(home_dir_pathnames, types_to_generate)
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# return hash keys as basenames only
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-
hash_with_full_pathnames.
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+
hash_with_full_pathnames.transform_keys { |k| Pathname.new(k).basename.to_s }
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end
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# generate hash of checksums by file name for bag data dir files
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@@ -199,7 +199,7 @@ module Moab
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data_pathnames = deposit_bag_pathname.join(DATA_DIR_BASENAME).find
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hash_with_full_pathnames = generate_checksums_hash(data_pathnames, types_to_generate)
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# return hash keys beginning with 'data/'
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hash_with_full_pathnames.
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hash_with_full_pathnames.transform_keys { |k| Pathname.new(k).relative_path_from(deposit_bag_pathname).to_s }
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end
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def generate_checksums_hash(pathnames, types_to_generate)
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data/lib/moab/exceptions.rb
CHANGED
@@ -2,10 +2,14 @@
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module Moab
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class MoabRuntimeError < RuntimeError; end
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class MoabStandardError < StandardError; end
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class FileNotFoundException < MoabRuntimeError; end
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+
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class InvalidMetadataException < MoabRuntimeError; end
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+
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class InvalidSuriSyntaxError < MoabRuntimeError; end
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class ObjectNotFoundException < MoabRuntimeError; end
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end
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data/lib/moab/file_group.rb
CHANGED
@@ -30,15 +30,15 @@ module Moab
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# @attribute
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# @return [String] The name of the file group
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attribute :group_id, String, :
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attribute :group_id, String, tag: 'groupId', key: true
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# @attribute
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# @return [String] The directory location or other source of this groups file data
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attribute :data_source, String, :
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attribute :data_source, String, tag: 'dataSource'
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# @attribute
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# @return [Integer] The total number of data files (dynamically calculated)
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attribute :file_count, Integer, :
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attribute :file_count, Integer, tag: 'fileCount', on_save: proc { |i| i.to_s }
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def file_count
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files.inject(0) { |sum, manifestation| sum + manifestation.file_count }
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@@ -46,7 +46,7 @@ module Moab
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# @attribute
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# @return [Integer] The total size (in bytes) of all data files (dynamically calculated)
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attribute :byte_count, Integer, :
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attribute :byte_count, Integer, tag: 'byteCount', on_save: proc { |i| i.to_s }
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def byte_count
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files.inject(0) { |sum, manifestation| sum + manifestation.byte_count }
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@@ -54,7 +54,7 @@ module Moab
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# @attribute
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# @return [Integer] The total disk usage (in 1 kB blocks) of all data files (estimating du -k result) (dynamically calculated)
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attribute :block_count, Integer, :
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attribute :block_count, Integer, tag: 'blockCount', on_save: proc { |i| i.to_s }
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def block_count
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files.inject(0) { |sum, manifestation| sum + manifestation.block_count }
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@@ -67,7 +67,7 @@ module Moab
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# @attribute
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# @return [Array<FileManifestation>] The set of files comprising the group
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has_many :files, FileManifestation, :
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has_many :files, FileManifestation, tag: 'file'
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def files
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signature_hash.values
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@@ -53,18 +53,18 @@ module Moab
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# (see Serializable#initialize)
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def initialize(opts = {})
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-
@subset_hash = Hash.new { |hash, key| hash[key] = FileGroupDifferenceSubset.new(:
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+
@subset_hash = Hash.new { |hash, key| hash[key] = FileGroupDifferenceSubset.new(change: key.to_s) }
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super(opts)
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end
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# @attribute
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# @return [String] The name of the file group
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attribute :group_id, String, :
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attribute :group_id, String, tag: 'groupId', key: true
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# @attribute
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# @return [Integer] the total number of differences found between the two inventories that were
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# compared (dynamically calculated)
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attribute :difference_count, Integer, :
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attribute :difference_count, Integer, tag: 'differenceCount', on_save: proc { |i| i.to_s }
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def difference_count
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count = 0
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@@ -76,49 +76,49 @@ module Moab
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# @attribute
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# @return [Integer] How many files were unchanged
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attribute :identical, Integer, :
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attribute :identical, Integer, on_save: proc { |n| n.to_s }
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def identical
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subset_hash[:identical].count
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end
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# @attribute
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# @return [Integer] How many duplicate copies of files were added
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attribute :copyadded, Integer, :
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attribute :copyadded, Integer, on_save: proc { |n| n.to_s }
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def copyadded
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subset_hash[:copyadded].count
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end
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# @attribute
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# @return [Integer] How many duplicate copies of files were deleted
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attribute :copydeleted, Integer, :
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attribute :copydeleted, Integer, on_save: proc { |n| n.to_s }
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def copydeleted
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subset_hash[:copydeleted].count
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end
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# @attribute
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# @return [Integer] How many files were renamed
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attribute :renamed, Integer, :
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attribute :renamed, Integer, on_save: proc { |n| n.to_s }
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def renamed
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subset_hash[:renamed].count
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end
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# @attribute
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# @return [Integer] How many files were modified
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attribute :modified, Integer, :
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attribute :modified, Integer, on_save: proc { |n| n.to_s }
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def modified
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subset_hash[:modified].count
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end
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# @attribute
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# @return [Integer] How many files were added
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attribute :added, Integer, :
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attribute :added, Integer, on_save: proc { |n| n.to_s }
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def added
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subset_hash[:added].count
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end
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# @attribute
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# @return [Integer] How many files were deleted
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attribute :deleted, Integer, :
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attribute :deleted, Integer, on_save: proc { |n| n.to_s }
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def deleted
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subset_hash[:deleted].count
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end
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@@ -126,7 +126,7 @@ module Moab
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# @attribute
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# @return [Array<FileGroupDifferenceSubset>] A set of Arrays (one for each change type),
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# each of which contains an collection of file-level differences having that change type.
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-
has_many :subsets, FileGroupDifferenceSubset, :
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has_many :subsets, FileGroupDifferenceSubset, tag: 'subset'
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def subsets
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subset_hash.values
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@@ -147,14 +147,14 @@ module Moab
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# @return [FileGroupDifference] Clone just this element for inclusion in a versionMetadata structure
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def summary
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FileGroupDifference.new(
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-
:
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:
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group_id: group_id,
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identical: identical,
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copyadded: copyadded,
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copydeleted: copydeleted,
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renamed: renamed,
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modified: modified,
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added: added,
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deleted: deleted
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)
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end
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@@ -231,7 +231,7 @@ module Moab
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other_paths = other_signature_hash[signature].paths
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matching_paths = basis_paths & other_paths
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matching_paths.each do |path|
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-
fid = FileInstanceDifference.new(:
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fid = FileInstanceDifference.new(change: 'identical')
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fid.basis_path = path
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fid.other_path = "same"
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fid.signatures << signature
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@@ -284,7 +284,7 @@ module Moab
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# Container for reporting the set of file-level differences of type 'modified'
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def tabulate_modified_files(basis_path_hash, other_path_hash)
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matching_keys(basis_path_hash, other_path_hash).each do |path|
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fid = FileInstanceDifference.new(:
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fid = FileInstanceDifference.new(change: 'modified')
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fid.basis_path = path
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fid.other_path = "same"
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fid.signatures << basis_path_hash[path]
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@@ -303,7 +303,7 @@ module Moab
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# Container for reporting the set of file-level differences of type 'added'
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def tabulate_added_files(basis_path_hash, other_path_hash)
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other_only_keys(basis_path_hash, other_path_hash).each do |path|
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fid = FileInstanceDifference.new(:
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fid = FileInstanceDifference.new(change: 'added')
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fid.basis_path = ""
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fid.other_path = path
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fid.signatures << other_path_hash[path]
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@@ -321,7 +321,7 @@ module Moab
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# Container for reporting the set of file-level differences of type 'deleted'
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def tabulate_deleted_files(basis_path_hash, other_path_hash)
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basis_only_keys(basis_path_hash, other_path_hash).each do |path|
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fid = FileInstanceDifference.new(:
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fid = FileInstanceDifference.new(change: 'deleted')
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fid.basis_path = path
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fid.other_path = ""
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fid.signatures << basis_path_hash[path]
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@@ -26,11 +26,11 @@ module Moab
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# @attribute
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# @return [String] The type of change (identical|renamed|modified|deleted|added)
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attribute :change, String, :
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attribute :change, String, key: true
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# @attribute
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# @return [Integer] How many files were changed
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attribute :count, Integer, :
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attribute :count, Integer, on_save: proc { |n| n.to_s }
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def count
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files.size
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@@ -38,6 +38,6 @@ module Moab
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# @attribute
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# @return [Array<FileInstanceDifference>] The set of file instances having this type of change
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-
has_many :files, FileInstanceDifference, :
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has_many :files, FileInstanceDifference, tag: 'file'
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end
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end
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data/lib/moab/file_instance.rb
CHANGED
@@ -25,7 +25,7 @@ module Moab
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# @attribute
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# @return [String] The id is the filename path, relative to the file group's base directory
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attribute :path, String, :
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attribute :path, String, key: true
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# @attribute
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# @return [String] gsub(/\n/,' ')
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@@ -38,14 +38,14 @@ module Moab
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# @attribute
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# @return [String] The file's path in the basis inventory (usually for an old version)
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attribute :basis_path, String, :
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attribute :basis_path, String, tag: 'basisPath', on_save: proc { |s| s.to_s }
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# @attribute
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# @return [String] The file's path in the other inventory (usually for an new version) compared against the basis
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attribute :other_path, String, :
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attribute :other_path, String, tag: 'otherPath', on_save: proc { |s| s.to_s }
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# @attribute
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# @return [Array<FileSignature>] The fixity data of the file manifestation(s) (plural if change was a content modification)
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has_many :signatures, FileSignature, :
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has_many :signatures, FileSignature, tag: 'fileSignature'
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end
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end
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data/lib/moab/file_inventory.rb
CHANGED
@@ -46,20 +46,20 @@ module Moab
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# @attribute
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# @return [String] The digital object identifier (druid)
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-
attribute :digital_object_id, String, :
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+
attribute :digital_object_id, String, tag: 'objectId'
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# @attribute
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# @return [Integer] The ordinal version number
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-
attribute :version_id, Integer, :
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attribute :version_id, Integer, tag: 'versionId', key: true, on_save: proc { |n| n.to_s }
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# @return [String] The unique identifier concatenating digital object id with version id
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def composite_key
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digital_object_id
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"#{digital_object_id}-#{StorageObject.version_dirname(version_id)}"
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end
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# @attribute
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# @return [String] The datetime at which the inventory was created
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attribute :inventory_datetime, String, :
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attribute :inventory_datetime, String, tag: 'inventoryDatetime'
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def inventory_datetime=(datetime)
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@inventory_datetime = Moab::UtcTime.input(datetime)
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@@ -71,7 +71,7 @@ module Moab
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# @attribute
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# @return [Integer] The total number of data files in the inventory (dynamically calculated)
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-
attribute :file_count, Integer, :
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+
attribute :file_count, Integer, tag: 'fileCount', on_save: proc { |t| t.to_s }
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def file_count
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groups.inject(0) { |sum, group| sum + group.file_count }
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@@ -79,7 +79,7 @@ module Moab
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# @attribute
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# @return [Integer] The total size (in bytes) in all files of all files in the inventory (dynamically calculated)
|
82
|
-
attribute :byte_count, Integer, :
|
82
|
+
attribute :byte_count, Integer, tag: 'byteCount', on_save: proc { |t| t.to_s }
|
83
83
|
|
84
84
|
def byte_count
|
85
85
|
groups.inject(0) { |sum, group| sum + group.byte_count }
|
@@ -87,7 +87,7 @@ module Moab
|
|
87
87
|
|
88
88
|
# @attribute
|
89
89
|
# @return [Integer] The total disk usage (in 1 kB blocks) of all data files (estimating du -k result) (dynamically calculated)
|
90
|
-
attribute :block_count, Integer, :
|
90
|
+
attribute :block_count, Integer, tag: 'blockCount', on_save: proc { |t| t.to_s }
|
91
91
|
|
92
92
|
def block_count
|
93
93
|
groups.inject(0) { |sum, group| sum + group.block_count }
|
@@ -95,7 +95,7 @@ module Moab
|
|
95
95
|
|
96
96
|
# @attribute
|
97
97
|
# @return [Array<FileGroup>] The set of data groups comprising the version
|
98
|
-
has_many :groups, FileGroup, :
|
98
|
+
has_many :groups, FileGroup, tag: 'fileGroup'
|
99
99
|
|
100
100
|
# @return [Array<FileGroup] The set of data groups that contain files
|
101
101
|
def non_empty_groups
|
@@ -194,7 +194,7 @@ module Moab
|
|
194
194
|
signatures_from_bag = signatures_from_bagit_manifests(bag_pathname)
|
195
195
|
bag_data_subdirs = bag_pathname.join('data').children
|
196
196
|
bag_data_subdirs.each do |subdir|
|
197
|
-
groups << FileGroup.new(:
|
197
|
+
groups << FileGroup.new(group_id: subdir.basename.to_s).group_from_bagit_subdir(subdir, signatures_from_bag)
|
198
198
|
end
|
199
199
|
self
|
200
200
|
end
|
@@ -30,11 +30,11 @@ module Moab
|
|
30
30
|
|
31
31
|
# @attribute
|
32
32
|
# @return [String] The digital object ID (druid)
|
33
|
-
attribute :digital_object_id, String, :
|
33
|
+
attribute :digital_object_id, String, tag: 'objectId'
|
34
34
|
|
35
35
|
# @attribute
|
36
36
|
# @return [Integer] the number of differences found between the two inventories that were compared (dynamically calculated)
|
37
|
-
attribute :difference_count, Integer, :
|
37
|
+
attribute :difference_count, Integer, tag: 'differenceCount', on_save: proc { |i| i.to_s }
|
38
38
|
|
39
39
|
def difference_count
|
40
40
|
@group_differences.inject(0) { |sum, group| sum + group.difference_count }
|
@@ -50,7 +50,7 @@ module Moab
|
|
50
50
|
|
51
51
|
# @attribute
|
52
52
|
# @return [String] The datetime at which the report was run
|
53
|
-
attribute :report_datetime, String, :
|
53
|
+
attribute :report_datetime, String, tag: 'reportDatetime'
|
54
54
|
|
55
55
|
def report_datetime=(datetime)
|
56
56
|
@report_datetime = Moab::UtcTime.input(datetime)
|
@@ -62,7 +62,7 @@ module Moab
|
|
62
62
|
|
63
63
|
# @attribute
|
64
64
|
# @return [Array<FileGroupDifference>] The set of data groups comprising the version
|
65
|
-
has_many :group_differences, FileGroupDifference, :
|
65
|
+
has_many :group_differences, FileGroupDifference, tag: 'fileGroupDifference'
|
66
66
|
|
67
67
|
# @return [Array<String>] The data fields to include in summary reports
|
68
68
|
def summary_fields
|
@@ -89,8 +89,8 @@ module Moab
|
|
89
89
|
group_ids = basis_inventory.group_ids | other_inventory.group_ids
|
90
90
|
group_ids.each do |group_id|
|
91
91
|
# get a pair of groups to compare, creating a empty group if not present in the inventory
|
92
|
-
basis_group = basis_inventory.group(group_id) || FileGroup.new(:
|
93
|
-
other_group = other_inventory.group(group_id) || FileGroup.new(:
|
92
|
+
basis_group = basis_inventory.group(group_id) || FileGroup.new(group_id: group_id)
|
93
|
+
other_group = other_inventory.group(group_id) || FileGroup.new(group_id: group_id)
|
94
94
|
@group_differences << FileGroupDifference.new.compare_file_groups(basis_group, other_group)
|
95
95
|
end
|
96
96
|
self
|
@@ -30,7 +30,7 @@ module Moab
|
|
30
30
|
|
31
31
|
# @attribute
|
32
32
|
# @return [FileSignature] The fixity data of the file instance
|
33
|
-
element :signature, FileSignature, :
|
33
|
+
element :signature, FileSignature, tag: 'fileSignature'
|
34
34
|
|
35
35
|
def signature
|
36
36
|
@signature.is_a?(Array) ? @signature[0] : @signature
|
@@ -42,7 +42,7 @@ module Moab
|
|
42
42
|
|
43
43
|
# @attribute
|
44
44
|
# @return [Array<FileInstance>] The location(s) of the file manifestation's file instances
|
45
|
-
has_many :instances, FileInstance, :
|
45
|
+
has_many :instances, FileInstance, tag: 'fileInstance'
|
46
46
|
|
47
47
|
# @api internal
|
48
48
|
# @return [Array<String>] Create an array from all the file paths of the child {FileInstance} objects
|
data/lib/moab/file_signature.rb
CHANGED
@@ -46,19 +46,19 @@ module Moab
|
|
46
46
|
|
47
47
|
# @attribute
|
48
48
|
# @return [Integer] The size of the file in bytes
|
49
|
-
attribute :size, Integer, :
|
49
|
+
attribute :size, Integer, on_save: proc { |n| n.to_s }
|
50
50
|
|
51
51
|
# @attribute
|
52
52
|
# @return [String] The MD5 checksum value of the file
|
53
|
-
attribute :md5, String, :
|
53
|
+
attribute :md5, String, on_save: proc { |n| n.nil? ? "" : n.to_s }
|
54
54
|
|
55
55
|
# @attribute
|
56
56
|
# @return [String] The SHA1 checksum value of the file
|
57
|
-
attribute :sha1, String, :
|
57
|
+
attribute :sha1, String, on_save: proc { |n| n.nil? ? "" : n.to_s }
|
58
58
|
|
59
59
|
# @attribute
|
60
60
|
# @return [String] The SHA256 checksum value of the file
|
61
|
-
attribute :sha256, String, :
|
61
|
+
attribute :sha256, String, on_save: proc { |n| n.nil? ? "" : n.to_s }
|
62
62
|
|
63
63
|
KNOWN_ALGOS = {
|
64
64
|
md5: proc { Digest::MD5.new },
|
@@ -85,7 +85,7 @@ module Moab
|
|
85
85
|
end
|
86
86
|
end
|
87
87
|
|
88
|
-
new(signatures.
|
88
|
+
new(signatures.transform_values(&:hexdigest).merge(size: pathname.size))
|
89
89
|
end
|
90
90
|
|
91
91
|
# @param type [Symbol,String] The type of checksum
|
@@ -39,20 +39,20 @@ module Moab
|
|
39
39
|
|
40
40
|
# @attribute
|
41
41
|
# @return [String] The object ID (druid)
|
42
|
-
attribute :digital_object_id, String, :
|
42
|
+
attribute :digital_object_id, String, tag: 'objectId'
|
43
43
|
|
44
44
|
# @attribute
|
45
45
|
# @return [Integer] The ordinal version number
|
46
|
-
attribute :version_id, Integer, :
|
46
|
+
attribute :version_id, Integer, tag: 'versionId', key: true, on_save: proc { |n| n.to_s }
|
47
47
|
|
48
48
|
# @return [String] The unique identifier concatenating digital object id with version id
|
49
49
|
def composite_key
|
50
|
-
@digital_object_id
|
50
|
+
"#{@digital_object_id}-#{StorageObject.version_dirname(@version_id)}"
|
51
51
|
end
|
52
52
|
|
53
53
|
# @attribute
|
54
54
|
# @return [String] The datetime at which the catalog was updated
|
55
|
-
attribute :catalog_datetime, Time, :
|
55
|
+
attribute :catalog_datetime, Time, tag: 'catalogDatetime'
|
56
56
|
|
57
57
|
def catalog_datetime=(datetime)
|
58
58
|
@catalog_datetime = Moab::UtcTime.input(datetime)
|
@@ -64,7 +64,7 @@ module Moab
|
|
64
64
|
|
65
65
|
# @attribute
|
66
66
|
# @return [Integer] The total number of data files (dynamically calculated)
|
67
|
-
attribute :file_count, Integer, :
|
67
|
+
attribute :file_count, Integer, tag: 'fileCount', on_save: proc { |t| t.to_s }
|
68
68
|
|
69
69
|
def file_count
|
70
70
|
entries.size
|
@@ -72,7 +72,7 @@ module Moab
|
|
72
72
|
|
73
73
|
# @attribute
|
74
74
|
# @return [Integer] The total size (in bytes) of all data files (dynamically calculated)
|
75
|
-
attribute :byte_count, Integer, :
|
75
|
+
attribute :byte_count, Integer, tag: 'byteCount', on_save: proc { |t| t.to_s }
|
76
76
|
|
77
77
|
def byte_count
|
78
78
|
entries.inject(0) { |sum, entry| sum + entry.signature.size.to_i }
|
@@ -80,7 +80,7 @@ module Moab
|
|
80
80
|
|
81
81
|
# @attribute
|
82
82
|
# @return [Integer] The total disk usage (in 1 kB blocks) of all data files (estimating du -k result) (dynamically calculated)
|
83
|
-
attribute :block_count, Integer, :
|
83
|
+
attribute :block_count, Integer, tag: 'blockCount', on_save: proc { |t| t.to_s }
|
84
84
|
|
85
85
|
def block_count
|
86
86
|
block_size = 1024
|
@@ -94,7 +94,7 @@ module Moab
|
|
94
94
|
|
95
95
|
# @attribute
|
96
96
|
# @return [Array<SignatureCatalogEntry>] The set of data groups comprising the version
|
97
|
-
has_many :entries, SignatureCatalogEntry, :
|
97
|
+
has_many :entries, SignatureCatalogEntry, tag: 'entry'
|
98
98
|
|
99
99
|
def entries=(entry_array)
|
100
100
|
entry_array.each do |entry|
|
@@ -178,10 +178,10 @@ module Moab
|
|
178
178
|
# containing only those files that were added in this version
|
179
179
|
# @example {include:file:spec/features/catalog/version_additions_spec.rb}
|
180
180
|
def version_additions(version_inventory)
|
181
|
-
version_additions = FileInventory.new(:
|
181
|
+
version_additions = FileInventory.new(type: 'additions')
|
182
182
|
version_additions.copy_ids(version_inventory)
|
183
183
|
version_inventory.groups.each do |group|
|
184
|
-
group_addtions = FileGroup.new(:
|
184
|
+
group_addtions = FileGroup.new(group_id: group.group_id)
|
185
185
|
group.files.each do |file|
|
186
186
|
group_addtions.add_file_instance(file.signature, file.instances[0]) unless @signature_hash.key?(file.signature)
|
187
187
|
end
|
@@ -25,19 +25,19 @@ module Moab
|
|
25
25
|
|
26
26
|
# @attribute
|
27
27
|
# @return [Integer] The ordinal version number
|
28
|
-
attribute :version_id, Integer, :
|
28
|
+
attribute :version_id, Integer, tag: 'originalVersion', key: true, on_save: proc { |n| n.to_s }
|
29
29
|
|
30
30
|
# @attribute
|
31
31
|
# @return [String] The name of the file group
|
32
|
-
attribute :group_id, String, :
|
32
|
+
attribute :group_id, String, tag: 'groupId', key: true
|
33
33
|
|
34
34
|
# @attribute
|
35
35
|
# @return [String] The id is the filename path, relative to the file group's base directory
|
36
|
-
attribute :path, String, :
|
36
|
+
attribute :path, String, key: true, tag: 'storagePath'
|
37
37
|
|
38
38
|
# @attribute
|
39
39
|
# @return [FileSignature] The fixity data of the file instance
|
40
|
-
element :signature, FileSignature, :
|
40
|
+
element :signature, FileSignature, tag: 'fileSignature'
|
41
41
|
|
42
42
|
def signature
|
43
43
|
# HappyMapper's parser tries to put an array of signatures in the signature field
|
data/lib/moab/storage_object.rb
CHANGED
@@ -84,10 +84,10 @@ module Moab
|
|
84
84
|
# @return [FileInventory] The file inventory of the specified type for this version
|
85
85
|
def versionize_bag(bag_dir, current_version, new_version)
|
86
86
|
new_inventory = FileInventory.new(
|
87
|
-
:
|
88
|
-
:
|
89
|
-
:
|
90
|
-
:
|
87
|
+
type: 'version',
|
88
|
+
digital_object_id: @digital_object_id,
|
89
|
+
version_id: new_version.version_id,
|
90
|
+
inventory_datetime: Time.now
|
91
91
|
)
|
92
92
|
new_inventory.inventory_from_bagit_bag(bag_dir)
|
93
93
|
new_inventory.write_xml_file(bag_dir)
|
@@ -133,7 +133,7 @@ module Moab
|
|
133
133
|
|
134
134
|
@object_pathname.children.each do |dirname|
|
135
135
|
vnum = dirname.basename.to_s
|
136
|
-
list << vnum[1
|
136
|
+
list << vnum[1..].to_i if vnum =~ /^v(\d+)$/
|
137
137
|
end
|
138
138
|
list.sort
|
139
139
|
end
|
@@ -85,13 +85,13 @@ module Moab
|
|
85
85
|
end
|
86
86
|
|
87
87
|
def version_dir_format?(dirname)
|
88
|
-
dirname =~ /^
|
88
|
+
dirname =~ /^v\d{4}$/
|
89
89
|
end
|
90
90
|
|
91
91
|
# call only if the version directories are "correctly named" vdddd
|
92
92
|
def check_sequential_version_dirs
|
93
93
|
version_directories.each_with_index do |dir_name, index|
|
94
|
-
next if dir_name[1
|
94
|
+
next if dir_name[1..].to_i == index + 1 # version numbering starts at 1, array indexing at 0
|
95
95
|
|
96
96
|
return [result_hash(VERSIONS_NOT_IN_ORDER, version_directories)]
|
97
97
|
end
|
@@ -45,7 +45,7 @@ module Moab
|
|
45
45
|
|
46
46
|
# @return [String] The unique identifier concatenating digital object id with version id
|
47
47
|
def composite_key
|
48
|
-
@storage_object.digital_object_id
|
48
|
+
"#{@storage_object.digital_object_id}-#{StorageObject.version_dirname(@version_id)}"
|
49
49
|
end
|
50
50
|
|
51
51
|
# @return [Boolean] true if the object version directory exists
|
@@ -115,12 +115,12 @@ module Moab
|
|
115
115
|
|
116
116
|
@inventory_cache[type] = FileInventory.read_xml_file(@version_pathname.join('manifests'), type)
|
117
117
|
else
|
118
|
-
groups = %w[content metadata].collect { |id| FileGroup.new(:
|
118
|
+
groups = %w[content metadata].collect { |id| FileGroup.new(group_id: id) }
|
119
119
|
FileInventory.new(
|
120
|
-
:
|
121
|
-
:
|
122
|
-
:
|
123
|
-
:
|
120
|
+
type: 'version',
|
121
|
+
digital_object_id: @storage_object.digital_object_id,
|
122
|
+
version_id: @version_id,
|
123
|
+
groups: groups
|
124
124
|
)
|
125
125
|
end
|
126
126
|
end
|
@@ -131,7 +131,7 @@ module Moab
|
|
131
131
|
if version_id > 0
|
132
132
|
SignatureCatalog.read_xml_file(@version_pathname.join('manifests'))
|
133
133
|
else
|
134
|
-
SignatureCatalog.new(:
|
134
|
+
SignatureCatalog.new(digital_object_id: @storage_object.digital_object_id)
|
135
135
|
end
|
136
136
|
end
|
137
137
|
|
@@ -202,12 +202,12 @@ module Moab
|
|
202
202
|
# @return [void] examine the version's directory and create/serialize a {FileInventory} containing the manifest files
|
203
203
|
def generate_manifest_inventory
|
204
204
|
manifest_inventory = FileInventory.new(
|
205
|
-
:
|
206
|
-
:
|
207
|
-
:
|
205
|
+
type: 'manifests',
|
206
|
+
digital_object_id: @storage_object.digital_object_id,
|
207
|
+
version_id: @version_id
|
208
208
|
)
|
209
209
|
pathname = @version_pathname.join('manifests')
|
210
|
-
manifest_inventory.groups << FileGroup.new(:
|
210
|
+
manifest_inventory.groups << FileGroup.new(group_id: 'manifests').group_from_directory(pathname, false)
|
211
211
|
manifest_inventory.write_xml_file(pathname)
|
212
212
|
end
|
213
213
|
|
@@ -312,7 +312,7 @@ module Moab
|
|
312
312
|
version_additions = file_inventory('additions')
|
313
313
|
result.subentities << VerificationResult.verify_value('composite_key', composite_key, version_additions.composite_key)
|
314
314
|
data_directory = @version_pathname.join('data')
|
315
|
-
directory_inventory = FileInventory.new(:
|
315
|
+
directory_inventory = FileInventory.new(type: 'directory').inventory_from_directory(data_directory)
|
316
316
|
diff = FileInventoryDifference.new
|
317
317
|
diff.compare(version_additions, directory_inventory)
|
318
318
|
compare_result = VerificationResult.new('file_differences')
|
@@ -160,7 +160,7 @@ module Moab
|
|
160
160
|
# @param druid [String] The object identifier
|
161
161
|
# @return [void] transfer the object to the preservation repository
|
162
162
|
def store_new_object_version(druid, bag_pathname)
|
163
|
-
storage_object(druid,
|
163
|
+
storage_object(druid, true).ingest_bag(bag_pathname)
|
164
164
|
end
|
165
165
|
|
166
166
|
private
|
@@ -110,7 +110,7 @@ module Moab
|
|
110
110
|
# @return [Pathname] Pathname object containing the full path for the specified file
|
111
111
|
def self.retrieve_file(file_category, file_id, object_id, version_id = nil)
|
112
112
|
storage_object_version = @@repository.storage_object(object_id).find_object_version(version_id)
|
113
|
-
|
113
|
+
storage_object_version.find_filepath(file_category, file_id)
|
114
114
|
end
|
115
115
|
|
116
116
|
# @param [String] file_category The category of file ('content', 'metdata', or 'manifest')
|
@@ -120,7 +120,7 @@ module Moab
|
|
120
120
|
# @return [Pathname] Pathname object containing the full path for the specified file
|
121
121
|
def self.retrieve_file_using_signature(file_category, file_signature, object_id, version_id = nil)
|
122
122
|
storage_object_version = @@repository.storage_object(object_id).find_object_version(version_id)
|
123
|
-
|
123
|
+
storage_object_version.find_filepath_using_signature(file_category, file_signature)
|
124
124
|
end
|
125
125
|
|
126
126
|
# @param [String] file_category The category of file ('content', 'metdata', or 'manifest')
|
@@ -130,7 +130,7 @@ module Moab
|
|
130
130
|
# @return [FileSignature] The signature of the file
|
131
131
|
def self.retrieve_file_signature(file_category, file_id, object_id, version_id = nil)
|
132
132
|
storage_object_version = @@repository.storage_object(object_id).find_object_version(version_id)
|
133
|
-
|
133
|
+
storage_object_version.find_signature(file_category, file_id)
|
134
134
|
end
|
135
135
|
|
136
136
|
# @param [String] object_id The digital object identifier of the object
|
@@ -25,10 +25,10 @@ module Moab
|
|
25
25
|
|
26
26
|
# @attribute
|
27
27
|
# @return [String] The digital object identifier
|
28
|
-
attribute :digital_object_id, String, :
|
28
|
+
attribute :digital_object_id, String, tag: 'objectId'
|
29
29
|
|
30
30
|
# @attribute
|
31
31
|
# @return [Array<VersionMetadataEntry>] An array of version metadata entries, one per version
|
32
|
-
has_many :versions, VersionMetadataEntry, :
|
32
|
+
has_many :versions, VersionMetadataEntry, tag: 'version'
|
33
33
|
end
|
34
34
|
end
|
@@ -24,7 +24,7 @@ module Moab
|
|
24
24
|
|
25
25
|
# @attribute
|
26
26
|
# @return [Integer] The object version number (A sequential integer)
|
27
|
-
attribute :version_id, Integer, :
|
27
|
+
attribute :version_id, Integer, tag: 'versionId', key: true, on_save: proc { |n| n.to_s }
|
28
28
|
|
29
29
|
# @attribute
|
30
30
|
# @return [String] "an external version label that increments the most significant digit for major revisions,
|
@@ -46,14 +46,14 @@ module Moab
|
|
46
46
|
|
47
47
|
# @attribute
|
48
48
|
# @return [FileGroupDifference] Summary of content file differences since previous version
|
49
|
-
element :content_changes, FileGroupDifference, :
|
49
|
+
element :content_changes, FileGroupDifference, tag: 'fileGroupDifference'
|
50
50
|
|
51
51
|
# @attribute
|
52
52
|
# @return [FileGroupDifference] Summary of metadata file differences since previous version
|
53
|
-
element :metadata_changes, FileGroupDifference, :
|
53
|
+
element :metadata_changes, FileGroupDifference, tag: 'fileGroupDifference'
|
54
54
|
|
55
55
|
# @attribute
|
56
56
|
# @return [Array<VersionMetadataEvent>] Array of events with timestamps that track lifecycle stages
|
57
|
-
has_many :events, VersionMetadataEvent, :
|
57
|
+
has_many :events, VersionMetadataEvent, tag: 'event'
|
58
58
|
end
|
59
59
|
end
|
data/lib/serializer/manifest.rb
CHANGED
@@ -22,7 +22,7 @@ module Serializer
|
|
22
22
|
filename
|
23
23
|
else
|
24
24
|
cname = name.split(/::/).last
|
25
|
-
cname[0, 1].downcase
|
25
|
+
"#{cname[0, 1].downcase}#{cname[1..]}.xml"
|
26
26
|
end
|
27
27
|
end
|
28
28
|
|
@@ -59,7 +59,7 @@ module Serializer
|
|
59
59
|
def self.write_xml_file(xml_object, parent_dir, filename = nil)
|
60
60
|
parent_dir.mkpath
|
61
61
|
xml_pathname(parent_dir, filename).open('w') do |f|
|
62
|
-
xmlBuilder = Nokogiri::XML::Builder.new(:
|
62
|
+
xmlBuilder = Nokogiri::XML::Builder.new(encoding: 'UTF-8')
|
63
63
|
xmlBuilder = xml_object.to_xml(xmlBuilder)
|
64
64
|
f << xmlBuilder.to_xml
|
65
65
|
end
|
@@ -23,7 +23,7 @@ module Stanford
|
|
23
23
|
# Many of these objects have contentMetadata with no child elements, such as this:
|
24
24
|
# <contentMetadata objectId="bd608mj3166" type="file"/>
|
25
25
|
# but there are also objects that have no datasteam of this name at all
|
26
|
-
cm_inventory = Moab::FileInventory.new(:
|
26
|
+
cm_inventory = Moab::FileInventory.new(type: "version", digital_object_id: object_id, version_id: version_id)
|
27
27
|
content_group = group_from_cm(content_metadata, subset)
|
28
28
|
cm_inventory.groups << content_group
|
29
29
|
cm_inventory
|
@@ -49,7 +49,7 @@ module Stanford
|
|
49
49
|
else
|
50
50
|
raise(Moab::MoabRuntimeError, "Unknown disposition subset (#{subset})")
|
51
51
|
end
|
52
|
-
content_group = Moab::FileGroup.new(:
|
52
|
+
content_group = Moab::FileGroup.new(group_id: 'content', data_source: "contentMetadata-#{subset}")
|
53
53
|
nodeset.each do |file_node|
|
54
54
|
signature = generate_signature(file_node)
|
55
55
|
instance = generate_instance(file_node)
|
@@ -85,10 +85,10 @@ module Stanford
|
|
85
85
|
instance = Moab::FileInstance.new
|
86
86
|
instance.path = node.attributes['id'].content
|
87
87
|
instance.datetime = begin
|
88
|
-
|
89
|
-
|
90
|
-
|
91
|
-
|
88
|
+
node.attributes['datetime'].content
|
89
|
+
rescue
|
90
|
+
nil
|
91
|
+
end
|
92
92
|
instance
|
93
93
|
end
|
94
94
|
|
@@ -98,23 +98,23 @@ module Stanford
|
|
98
98
|
# @example {include:file:spec/features/stanford/content_metadata_write_spec.rb}
|
99
99
|
def generate_content_metadata(file_group, object_id, version_id)
|
100
100
|
cm = Nokogiri::XML::Builder.new do |xml|
|
101
|
-
xml.contentMetadata(:
|
102
|
-
xml.resource(:
|
101
|
+
xml.contentMetadata(type: "sample", objectId: object_id) do
|
102
|
+
xml.resource(type: "version", sequence: "1", id: "version-#{version_id}") do
|
103
103
|
file_group.files.each do |file_manifestation|
|
104
104
|
signature = file_manifestation.signature
|
105
105
|
file_manifestation.instances.each do |instance|
|
106
106
|
xml.file(
|
107
|
-
:
|
108
|
-
:
|
109
|
-
:
|
110
|
-
:
|
111
|
-
:
|
112
|
-
:
|
107
|
+
id: instance.path,
|
108
|
+
size: signature.size,
|
109
|
+
datetime: instance.datetime,
|
110
|
+
shelve: 'yes',
|
111
|
+
publish: 'yes',
|
112
|
+
preserve: 'yes'
|
113
113
|
) do
|
114
114
|
fixity = signature.fixity
|
115
|
-
xml.checksum(:
|
116
|
-
xml.checksum(:
|
117
|
-
xml.checksum(:
|
115
|
+
xml.checksum(type: "MD5") { xml.text signature.md5 } if fixity[:md5]
|
116
|
+
xml.checksum(type: "SHA-1") { xml.text signature.sha1 } if fixity[:sha1]
|
117
|
+
xml.checksum(type: "SHA-256") { xml.text signature.sha256 } if fixity[:sha256]
|
118
118
|
end
|
119
119
|
end
|
120
120
|
end
|
@@ -128,7 +128,7 @@ module Stanford
|
|
128
128
|
# @return [Boolean] True if contentMetadata has essential file attributes, else raise exception
|
129
129
|
def validate_content_metadata(content_metadata)
|
130
130
|
result = validate_content_metadata_details(content_metadata)
|
131
|
-
raise Moab::InvalidMetadataException, result[0]
|
131
|
+
raise Moab::InvalidMetadataException, "#{result[0]} ..." unless result.empty?
|
132
132
|
|
133
133
|
true
|
134
134
|
end
|
@@ -191,7 +191,7 @@ module Stanford
|
|
191
191
|
remediate_file_size(file_node, signature)
|
192
192
|
remediate_checksum_nodes(file_node, signature)
|
193
193
|
end
|
194
|
-
ng_doc.to_xml(:
|
194
|
+
ng_doc.to_xml(indent: 2)
|
195
195
|
end
|
196
196
|
|
197
197
|
# @param [Nokogiri::XML::Element] file_node the File stanza being remediated
|
@@ -31,11 +31,12 @@ module Stanford
|
|
31
31
|
# @return [FileInventory] Inventory of the files under the specified directory
|
32
32
|
def inventory_from_directory(directory, version_id = nil)
|
33
33
|
version_id ||= @version_id
|
34
|
-
version_inventory = Moab::FileInventory.new(type: 'version', digital_object_id: @digital_object_id,
|
34
|
+
version_inventory = Moab::FileInventory.new(type: 'version', digital_object_id: @digital_object_id,
|
35
|
+
version_id: version_id)
|
35
36
|
content_metadata = IO.read(File.join(directory, 'contentMetadata.xml'))
|
36
37
|
content_group = Stanford::ContentInventory.new.group_from_cm(content_metadata, 'preserve')
|
37
38
|
version_inventory.groups << content_group
|
38
|
-
metadata_group = Moab::FileGroup.new(:
|
39
|
+
metadata_group = Moab::FileGroup.new(group_id: 'metadata').group_from_directory(directory)
|
39
40
|
version_inventory.groups << metadata_group
|
40
41
|
version_inventory
|
41
42
|
end
|
@@ -31,9 +31,9 @@ module Stanford
|
|
31
31
|
# @param object_id [String] The identifier of the digital object whose path is requested
|
32
32
|
# @return [String] the druid tree directory path based on the given object identifier.
|
33
33
|
def druid_tree(object_id)
|
34
|
-
#
|
34
|
+
# NOTE: this seems an odd place to do druid validation, but leaving it here for now
|
35
35
|
syntax_msg = "Identifier has invalid suri syntax: #{object_id}"
|
36
|
-
raise(Moab::InvalidSuriSyntaxError, syntax_msg
|
36
|
+
raise(Moab::InvalidSuriSyntaxError, "#{syntax_msg} nil or empty") if object_id.to_s.empty?
|
37
37
|
|
38
38
|
identifier = object_id.split(':')[-1]
|
39
39
|
raise(Moab::InvalidSuriSyntaxError, syntax_msg) if identifier.to_s.empty?
|
metadata
CHANGED
@@ -1,17 +1,17 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: moab-versioning
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 4.4.
|
4
|
+
version: 4.4.2
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Darren Weber
|
8
8
|
- Richard Anderson
|
9
9
|
- Lynn McRae
|
10
10
|
- Hannah Frost
|
11
|
-
autorequire:
|
11
|
+
autorequire:
|
12
12
|
bindir: bin
|
13
13
|
cert_chain: []
|
14
|
-
date:
|
14
|
+
date: 2021-06-01 00:00:00.000000000 Z
|
15
15
|
dependencies:
|
16
16
|
- !ruby/object:Gem::Dependency
|
17
17
|
name: druid-tools
|
@@ -145,28 +145,28 @@ dependencies:
|
|
145
145
|
requirements:
|
146
146
|
- - "~>"
|
147
147
|
- !ruby/object:Gem::Version
|
148
|
-
version:
|
148
|
+
version: '1.7'
|
149
149
|
type: :development
|
150
150
|
prerelease: false
|
151
151
|
version_requirements: !ruby/object:Gem::Requirement
|
152
152
|
requirements:
|
153
153
|
- - "~>"
|
154
154
|
- !ruby/object:Gem::Version
|
155
|
-
version:
|
155
|
+
version: '1.7'
|
156
156
|
- !ruby/object:Gem::Dependency
|
157
157
|
name: rubocop-rspec
|
158
158
|
requirement: !ruby/object:Gem::Requirement
|
159
159
|
requirements:
|
160
160
|
- - "~>"
|
161
161
|
- !ruby/object:Gem::Version
|
162
|
-
version:
|
162
|
+
version: '2.1'
|
163
163
|
type: :development
|
164
164
|
prerelease: false
|
165
165
|
version_requirements: !ruby/object:Gem::Requirement
|
166
166
|
requirements:
|
167
167
|
- - "~>"
|
168
168
|
- !ruby/object:Gem::Version
|
169
|
-
version:
|
169
|
+
version: '2.1'
|
170
170
|
description: Contains classes to process digital object version content and metadata
|
171
171
|
email:
|
172
172
|
- darren.weber@stanford.edu
|
@@ -215,23 +215,23 @@ homepage: https://github.com/sul-dlss/moab-versioning
|
|
215
215
|
licenses:
|
216
216
|
- Apache-2.0
|
217
217
|
metadata: {}
|
218
|
-
post_install_message:
|
218
|
+
post_install_message:
|
219
219
|
rdoc_options: []
|
220
220
|
require_paths:
|
221
221
|
- lib
|
222
222
|
required_ruby_version: !ruby/object:Gem::Requirement
|
223
223
|
requirements:
|
224
|
-
- - "
|
224
|
+
- - ">="
|
225
225
|
- !ruby/object:Gem::Version
|
226
|
-
version: '2.
|
226
|
+
version: '2.6'
|
227
227
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
228
228
|
requirements:
|
229
229
|
- - ">="
|
230
230
|
- !ruby/object:Gem::Version
|
231
231
|
version: '0'
|
232
232
|
requirements: []
|
233
|
-
rubygems_version: 3.
|
234
|
-
signing_key:
|
233
|
+
rubygems_version: 3.1.4
|
234
|
+
signing_key:
|
235
235
|
specification_version: 4
|
236
236
|
summary: Ruby implementation of digital object versioning toolkit used by the SULAIR
|
237
237
|
Digital Library
|