mizlab 0.1.2 → 0.1.4

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/mizlab/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Mizlab
-  VERSION = "0.1.2"
+  VERSION = "0.1.4"
 end

data/lib/mizlab.rb

@@ -7,25 +7,22 @@ require "stringio"
 
 module Mizlab
   class << self
-    # Fetch data via genbank
-    # @param  [String] accession Accession number Like "NC_012920".
+    # Fetch data via genbank. You can also give a block.
+    # @param  [String/Array] accessions Accession numbers Like ["NC_012920", ...].
     # @param  [Bool] is_protein wheather the accession is protein. Default to true.
     # @return [Bio::GenBank] GenBank object.
-    def getobj(accession, is_protein = false)
-      ret = is_protein ? fetch_protein(accession) : fetch_nucleotide(accession)
-      parse(ret) do |o|
-        return o
-      end
-    end
-
-    # Fetch multiple data via genbank
-    # @param  [Array] accessions Array of accession string.
-    # @param  [Bool] is_protein wheather the accession is protein. Default to true.
-    # @yield  [Bio::GenBank] GenBank object.
-    def getobjs(accessions, is_protein = false)
-      ret = is_protein ? fetch_protein(accessions) : fetch_nucleotide(accessions)
-      parse(ret) do |o|
-        yield o
+    def getobj(accessions, is_protein = false)
+      accessions = accessions.is_a?(String) ? [accessions] : accessions
+      accessions.each do |acc|
+        ret = is_protein ? fetch_protein(acc) : fetch_nucleotide(acc)
+        parse(ret) do |o|
+          if block_given?
+            yield o
+          else
+            return o
+          end
+        end
+        sleep(0.37) # Using 0.333... seconds, sometimes hit the NCBI rate limit
       end
     end
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: mizlab
 version: !ruby/object:Gem::Version
-  version: 0.1.2
+  version: 0.1.4
 platform: ruby
 authors:
 - Omochice
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2021-10-22 00:00:00.000000000 Z
+date: 2021-10-26 00:00:00.000000000 Z
 dependencies: []
 description: The tools for our laboratory
 email: